BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G38090.1 Length=1774 Score E Sequences producing significant alignments: (Bits) Value Ahg482816 jgi|Araly1|482816|fgenesh2_kg.4__1876__AT2G38090.1 2172 0.0 Ahg349486 jgi|Araly1|349486|fgenesh1_pg.C_scaffold_6000079 193 5e-48 > Ahg482816 jgi|Araly1|482816|fgenesh2_kg.4__1876__AT2G38090.1 Length=1680 Score = 2172 bits (1176), Expect = 0.0 Identities = 1452/1576 (92%), Gaps = 56/1576 (4%) Strand=Plus/Plus Query 1 CTGTTTCATATTCAtctctctcccctctctccctctatatct-ctctctcccTTTTCGAC 59 |||||||||||||||||||||||| ||||| |||||| ||| ||||||| | | || | Sbjct 1 CTGTTTCATATTCATCTCTCTCCCATCTCT--CTCTATCTCTCCTCTCTCGC-TCTC-CC 56 Query 60 -TTGAGAGTTTGGGTCCTTTGGGagaaagaagaagaagaagaaaaagaTTGGATTTTGTT 118 || || ||| | | ||||||||||||||||||||| | |||||| |||||||||||| Sbjct 57 TTTTCGA-CTTGAG-CGTTTGGGAGAAAGAAGAAGAAG-A-AAAAAGGTTGGATTTTGTT 112 Query 119 CACTTTAACATCTTCAATCTCTAAACCCACCTGAGTTTTCTCCATTTCTCTGTTTGGTTT 178 ||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 113 CACTTTATCATCTTCAATCTATCAACCCACCTGAGTTTTCTCCATTTCTCTGTTTGGTTT 172 Query 179 CTTGTCAGTTTTC-AAGAAAGCGTCCAAATCCT-AGATCCTCTGTTTTCTCTTCTCTGTT 236 ||||||||||||| || | ||| ||||||| || |||||||||||||||||||||||||| Sbjct 173 CTTGTCAGTTTTCTAA-AGAGCTTCCAAAT-CTGAGATCCTCTGTTTTCTCTTCTCTGTT 230 Query 237 TGCTTTCATTTTCTCTGGATTCGGATCTGACCACTAAAGAGAGGTTTATCGTTTCAGACA 296 |||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 231 TGCTTTAATTGTCTCTGGATTCGGATCTGACCACTAAAGAGAGGTTTATCG-TTCAGACA 289 Query 297 ACAAAACTCAAAGATCGAATCTATCTTTTGTCCTTAGAGTCTGGAAAAAGCAGctctctt 356 |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 290 ACAAAACTCAAAGATCGAATCTTTCTTTTGTCCTTAGAGTCTGGAAAAAGCA-------- 341 Query 357 ttgatctcctctttagattcttcaaagctttagatgcttatctctctttctctctcAGAT 416 | || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 342 --G--CT-CTCTTTAGATTCTTCAAAGCTTTAGATGCTTATCTCTCTTTCTCTCTCAGAT 396 Query 417 TCCATTTGAATAAATGCCATTTTGACAGATCAAATATCTCCCACTTTtctctctctctct 476 ||||||| || |||||||||||| |||||||||| ||||||||| ||| ||||||||||| Sbjct 397 TCCATTTCAA-AAATGCCATTTTAACAGATCAAA-ATCTCCCAC-TTT-TCTCTCTCTCT 452 Query 477 ctctctctctctctctctGTTTGAGCTCCACCATTATCGAAAACTCTG------t-ttt- 528 |||| ||| || |||| ||||||||||||||||||||||||||||| | ||| Sbjct 453 CTCTATCT-ACTATCTC--TTTGAGCTCCACCATTATCGAAAACTCTGTTTTTTTCTTTC 509 Query 529 tttCTTTCTTTCTTGATTCGATCAACAATCGTTGAAAACATGAACAGAGGAATCGAAGTT 588 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 510 TTTCTTTCTTTCTTGATTCGATCAACAATCGTTGAAAAGATGCACAGAGGAATCGAAGTT 569 Query 589 ATGTCACCAGCAACATATCTAGAGACATCAAACTGGTTGTTTCAAGAAAACAGAGGAACC 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 570 ATGTCACCAGCAACATATCTAGAGACATCAAACTGGTTGTTTCAAGAAAACAGAGGAACC 629 Query 649 AAATGGACAGCTGAAGAAAACAAGAAATTCGAAAACGCTTTAGCCTTTTACGACAAAGAT 708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 630 AAATGGACAGCTGAAGAAAACAAGAAATTCGAAAACGCTTTAGCCTTTTACGACAAAGAT 689 Query 709 ACTCCCGACAGATGGTCCAGAG-TCGCTGCCATGCTTCCCGGTAAAAC-AGTCGGAGATG 766 ||||| ||||||||||||| || |||||||||||||||| || ||||| | ||||||||| Sbjct 690 ACTCCTGACAGATGGTCCA-AGGTCGCTGCCATGCTTCCAGGAAAAACCA-TCGGAGATG 747 Query 767 TGATCAAACAATACAGAGAGCTTGAGGAAGACGTTAGCGACATCGAAGCTGGTCTTATAC 826 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 748 TGATCAAACAATACAGAGAGCTTGAGGAAGACGTTAGCGACATCGAAGCAGGTCTTATAC 807 Query 827 CAATCCCTGGTTACGCCTCTGATTCATTCACACTTGATTGGGGTGGCTACGACGGAGCAA 886 |||||||||| ||||| || |||||||||||||| || ||||| |||||||||||||| Sbjct 808 CAATCCCTGGCTACGCTTCCGATTCATTCACACTCGACTGGGGAGGCTACGACGGAGCCG 867 Query 887 GCGGTAACAATGGGTTTAACATGAACGGTTACTACTTTTCCGCCGCCGGAGGAAAGAGAG 946 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 868 GTGGTAACAATGGGTTTAACATGAACGGTTACTACTTTTCCGCCGCCGGAGGAAAGAGAG 927 Query 947 GATCCGCCGCACGAACGGCGGAGCATGAGAGGAAGAAAGGTGTTCCATGGACAGAAGAAG 1006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 928 GATCCGCCGCACGAACGGCGGAGCATGAGAGGAAGAAAGGTGTTCCATGGACAGAAGAAG 987 Query 1007 AACACAGACAATTTCTGATGGGTTTGAAGAAATATGGAAAAGGAGATTGGAGAAACATAG 1066 ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 988 AACACAGACAATTTCTGATGGGTCTAAAGAAATATGGAAAAGGAGATTGGAGAAACATAG 1047 Query 1067 CTCGTAACTTTGTGACCACAAGAACGCCAACGCAAGTCGCAAGTCACGCTCAAAAGTATT 1126 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1048 CTCGTAACTTTGTGACAACAAGAACGCCAACGCAAGTCGCAAGTCACGCTCAAAAGTATT 1107 Query 1127 TCATACGGCAAGTCAATGGTGGCAAAGACAAACGCCGTTCAAGCATCCATGATATCACAA 1186 ||||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||| | Sbjct 1108 TCATACGTCAAGTCAACGGTGGCAAAGACAAACGCCGATCAAGTATCCACGATATCACCA 1167 Query 1187 CCGTCAACATCCCCGACTCTCCTGACGCTGCAGCCGCGGATAACGCAACCGCAAACGCAC 1246 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1168 CCGTCAACATCCCCGACTCTCCTGACGCTGCAGCCGCGGATAACGCAACTGCAAACGCAC 1227 Query 1247 CTTGCTCGCCACCTTCCGTAGGAGGAAACCAGCGGGAGACATCGGAGTGGGAAGGTCAAA 1306 ||||||| || || || ||||||||| ||||||||| || ||||| ||||||||||||| Sbjct 1228 CTTGCTCACCCCCATCAATAGGAGGAAGCCAGCGGGAAACGTCGGAATGGGAAGGTCAAA 1287 Query 1307 CACTATACGATGAAACAGCAGCTGCGTTTTATAATCAAAACGCGTTTTCAGAAACGCTAC 1366 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 1288 CACTATACGATGAAACAACGGCTGCGTTTTATAATCAAAACGCGTTTTCAGAAACGCTAC 1347 Query 1367 TTGGAATGTCTTCGACGCCCTACATGGCAAAACTTCAGGAGCAGAGTTTTCTGAACGCAT 1426 ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| Sbjct 1348 TTGGAATGTCTTCGACGCCATACATGGCTAAACTGCAGGAGCAGAGTTTTCTGAACGCAT 1407 Query 1427 CGCAATTCGAATCGTACAATGCGTATCTCCAAATGTAGCTCACAAGGTGAAGATCTCGGA 1486 | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1408 CACAATTCGAATCGTACAATGCGTATCTCCAAATGTAGC--ACAAGGTGAAGATCTCGGA 1465 Query 1487 GAAGTTACGAGTTATATAATCATTAATAA-tttt--tgttttt-tCT---CTTAATCGGC 1539 || |||| ||||||||||||||||||||| |||| | ||||| | | |||||||||| Sbjct 1466 GACGTTAAGAGTTATATAATCATTAATAAGTTTTACTATTTTTGTTTTTTCTTAATCGGC 1525 Query 1540 GTGCATATACAAAAAA 1555 |||||||||||||||| Sbjct 1526 GTGCATATACAAAAAA 1541 Score = 200 bits (108), Expect = 3e-50 Identities = 130/140 (93%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 1591 TATTTGTTGTTTTGTTTACCATCTTTTTCCGTGGTTGATTCAACGAGTTTTCAGCAAATT 1650 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1542 TATTTGTTGTTTTGTTTACCATCTTTTTCCGTGGTTGATTCAACGAGTTTTCAACAAATT 1601 Query 1651 AATTAGGTTTTGTTATTTTAATTACTTGAGTGAT--TT-ATTTTTGTGATTTGGAACTCT 1707 |||||||||||||||||||| |||| ||||||| || |||| ||||||||||||||| Sbjct 1602 AATTAGGTTTTGTTATTTTATTTACC-GAGTGATAATTTATTTGAGTGATTTGGAACTCT 1660 Query 1708 TTTGAGCTCAAATTGCTTAT 1727 | |||||||||||||||||| Sbjct 1661 TATGAGCTCAAATTGCTTAT 1680 > Ahg349486 jgi|Araly1|349486|fgenesh1_pg.C_scaffold_6000079 Length=795 Score = 193 bits (104), Expect = 5e-48 Identities = 189/230 (82%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 973 GAGAGGAAGAAAGGTGTTCCATGGACAGAAGAAGAACACAGACAATTTCTGATGGGTTTG 1032 |||||||||||||| ||||| ||||| || || |||||| || |||||| ||||||||| Sbjct 421 GAGAGGAAGAAAGGAGTTCCGTGGACTGAGGACGAACACCTACTATTTCTAATGGGTTTG 480 Query 1033 AAGAAATATGGAAAAGGAGATTGGAGAAACATAGCTCGTAA-CTTTGTGACCACAAGAAC 1091 ||||||||||||||||||||||||||||||||||| || |||||||| || | || Sbjct 481 AAGAAATATGGAAAAGGAGATTGGAGAAACATAGCAAA-AAGCTTTGTGAAGACTCGGAC 539 Query 1092 GCCAACGCAAGTCGCAAGTCACGCTCAAAAGTATTT-CATACGGCAAGTCA-ATGGTGGC 1149 ||| ||||||||||| ||||||||||| ||||| | | || ||| ||| | | ||| Sbjct 540 GCCGACGCAAGTCGCTTCACACGCTCAAAAATATTTTCTT-CGACAACTCACA-GATGGT 597 Query 1150 AAAGACAAACGCCGTTCAAGCATCCATGATATCACAACCGTCAACATCCC 1199 ||||||||| | || |||||||| || |||||||| ||||| |||||||| Sbjct 598 AAAGACAAAAGACGATCAAGCATTCACGATATCACCACCGTTAACATCCC 647 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66581748260 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5