BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38090.1
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482816 jgi|Araly1|482816|fgenesh2_kg.4__1876__AT2G38090.1 2172 0.0
Ahg349486 jgi|Araly1|349486|fgenesh1_pg.C_scaffold_6000079 193 5e-48
> Ahg482816 jgi|Araly1|482816|fgenesh2_kg.4__1876__AT2G38090.1
Length=1680
Score = 2172 bits (1176), Expect = 0.0
Identities = 1452/1576 (92%), Gaps = 56/1576 (4%)
Strand=Plus/Plus
Query 1 CTGTTTCATATTCAtctctctcccctctctccctctatatct-ctctctcccTTTTCGAC 59
|||||||||||||||||||||||| ||||| |||||| ||| ||||||| | | || |
Sbjct 1 CTGTTTCATATTCATCTCTCTCCCATCTCT--CTCTATCTCTCCTCTCTCGC-TCTC-CC 56
Query 60 -TTGAGAGTTTGGGTCCTTTGGGagaaagaagaagaagaagaaaaagaTTGGATTTTGTT 118
|| || ||| | | ||||||||||||||||||||| | |||||| ||||||||||||
Sbjct 57 TTTTCGA-CTTGAG-CGTTTGGGAGAAAGAAGAAGAAG-A-AAAAAGGTTGGATTTTGTT 112
Query 119 CACTTTAACATCTTCAATCTCTAAACCCACCTGAGTTTTCTCCATTTCTCTGTTTGGTTT 178
||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 113 CACTTTATCATCTTCAATCTATCAACCCACCTGAGTTTTCTCCATTTCTCTGTTTGGTTT 172
Query 179 CTTGTCAGTTTTC-AAGAAAGCGTCCAAATCCT-AGATCCTCTGTTTTCTCTTCTCTGTT 236
||||||||||||| || | ||| ||||||| || ||||||||||||||||||||||||||
Sbjct 173 CTTGTCAGTTTTCTAA-AGAGCTTCCAAAT-CTGAGATCCTCTGTTTTCTCTTCTCTGTT 230
Query 237 TGCTTTCATTTTCTCTGGATTCGGATCTGACCACTAAAGAGAGGTTTATCGTTTCAGACA 296
|||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 231 TGCTTTAATTGTCTCTGGATTCGGATCTGACCACTAAAGAGAGGTTTATCG-TTCAGACA 289
Query 297 ACAAAACTCAAAGATCGAATCTATCTTTTGTCCTTAGAGTCTGGAAAAAGCAGctctctt 356
|||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 290 ACAAAACTCAAAGATCGAATCTTTCTTTTGTCCTTAGAGTCTGGAAAAAGCA-------- 341
Query 357 ttgatctcctctttagattcttcaaagctttagatgcttatctctctttctctctcAGAT 416
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 --G--CT-CTCTTTAGATTCTTCAAAGCTTTAGATGCTTATCTCTCTTTCTCTCTCAGAT 396
Query 417 TCCATTTGAATAAATGCCATTTTGACAGATCAAATATCTCCCACTTTtctctctctctct 476
||||||| || |||||||||||| |||||||||| ||||||||| ||| |||||||||||
Sbjct 397 TCCATTTCAA-AAATGCCATTTTAACAGATCAAA-ATCTCCCAC-TTT-TCTCTCTCTCT 452
Query 477 ctctctctctctctctctGTTTGAGCTCCACCATTATCGAAAACTCTG------t-ttt- 528
|||| ||| || |||| ||||||||||||||||||||||||||||| | |||
Sbjct 453 CTCTATCT-ACTATCTC--TTTGAGCTCCACCATTATCGAAAACTCTGTTTTTTTCTTTC 509
Query 529 tttCTTTCTTTCTTGATTCGATCAACAATCGTTGAAAACATGAACAGAGGAATCGAAGTT 588
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 510 TTTCTTTCTTTCTTGATTCGATCAACAATCGTTGAAAAGATGCACAGAGGAATCGAAGTT 569
Query 589 ATGTCACCAGCAACATATCTAGAGACATCAAACTGGTTGTTTCAAGAAAACAGAGGAACC 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 ATGTCACCAGCAACATATCTAGAGACATCAAACTGGTTGTTTCAAGAAAACAGAGGAACC 629
Query 649 AAATGGACAGCTGAAGAAAACAAGAAATTCGAAAACGCTTTAGCCTTTTACGACAAAGAT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 AAATGGACAGCTGAAGAAAACAAGAAATTCGAAAACGCTTTAGCCTTTTACGACAAAGAT 689
Query 709 ACTCCCGACAGATGGTCCAGAG-TCGCTGCCATGCTTCCCGGTAAAAC-AGTCGGAGATG 766
||||| ||||||||||||| || |||||||||||||||| || ||||| | |||||||||
Sbjct 690 ACTCCTGACAGATGGTCCA-AGGTCGCTGCCATGCTTCCAGGAAAAACCA-TCGGAGATG 747
Query 767 TGATCAAACAATACAGAGAGCTTGAGGAAGACGTTAGCGACATCGAAGCTGGTCTTATAC 826
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 748 TGATCAAACAATACAGAGAGCTTGAGGAAGACGTTAGCGACATCGAAGCAGGTCTTATAC 807
Query 827 CAATCCCTGGTTACGCCTCTGATTCATTCACACTTGATTGGGGTGGCTACGACGGAGCAA 886
|||||||||| ||||| || |||||||||||||| || ||||| ||||||||||||||
Sbjct 808 CAATCCCTGGCTACGCTTCCGATTCATTCACACTCGACTGGGGAGGCTACGACGGAGCCG 867
Query 887 GCGGTAACAATGGGTTTAACATGAACGGTTACTACTTTTCCGCCGCCGGAGGAAAGAGAG 946
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 GTGGTAACAATGGGTTTAACATGAACGGTTACTACTTTTCCGCCGCCGGAGGAAAGAGAG 927
Query 947 GATCCGCCGCACGAACGGCGGAGCATGAGAGGAAGAAAGGTGTTCCATGGACAGAAGAAG 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 GATCCGCCGCACGAACGGCGGAGCATGAGAGGAAGAAAGGTGTTCCATGGACAGAAGAAG 987
Query 1007 AACACAGACAATTTCTGATGGGTTTGAAGAAATATGGAAAAGGAGATTGGAGAAACATAG 1066
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 988 AACACAGACAATTTCTGATGGGTCTAAAGAAATATGGAAAAGGAGATTGGAGAAACATAG 1047
Query 1067 CTCGTAACTTTGTGACCACAAGAACGCCAACGCAAGTCGCAAGTCACGCTCAAAAGTATT 1126
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 CTCGTAACTTTGTGACAACAAGAACGCCAACGCAAGTCGCAAGTCACGCTCAAAAGTATT 1107
Query 1127 TCATACGGCAAGTCAATGGTGGCAAAGACAAACGCCGTTCAAGCATCCATGATATCACAA 1186
||||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||| |
Sbjct 1108 TCATACGTCAAGTCAACGGTGGCAAAGACAAACGCCGATCAAGTATCCACGATATCACCA 1167
Query 1187 CCGTCAACATCCCCGACTCTCCTGACGCTGCAGCCGCGGATAACGCAACCGCAAACGCAC 1246
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1168 CCGTCAACATCCCCGACTCTCCTGACGCTGCAGCCGCGGATAACGCAACTGCAAACGCAC 1227
Query 1247 CTTGCTCGCCACCTTCCGTAGGAGGAAACCAGCGGGAGACATCGGAGTGGGAAGGTCAAA 1306
||||||| || || || ||||||||| ||||||||| || ||||| |||||||||||||
Sbjct 1228 CTTGCTCACCCCCATCAATAGGAGGAAGCCAGCGGGAAACGTCGGAATGGGAAGGTCAAA 1287
Query 1307 CACTATACGATGAAACAGCAGCTGCGTTTTATAATCAAAACGCGTTTTCAGAAACGCTAC 1366
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 CACTATACGATGAAACAACGGCTGCGTTTTATAATCAAAACGCGTTTTCAGAAACGCTAC 1347
Query 1367 TTGGAATGTCTTCGACGCCCTACATGGCAAAACTTCAGGAGCAGAGTTTTCTGAACGCAT 1426
||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 1348 TTGGAATGTCTTCGACGCCATACATGGCTAAACTGCAGGAGCAGAGTTTTCTGAACGCAT 1407
Query 1427 CGCAATTCGAATCGTACAATGCGTATCTCCAAATGTAGCTCACAAGGTGAAGATCTCGGA 1486
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1408 CACAATTCGAATCGTACAATGCGTATCTCCAAATGTAGC--ACAAGGTGAAGATCTCGGA 1465
Query 1487 GAAGTTACGAGTTATATAATCATTAATAA-tttt--tgttttt-tCT---CTTAATCGGC 1539
|| |||| ||||||||||||||||||||| |||| | ||||| | | ||||||||||
Sbjct 1466 GACGTTAAGAGTTATATAATCATTAATAAGTTTTACTATTTTTGTTTTTTCTTAATCGGC 1525
Query 1540 GTGCATATACAAAAAA 1555
||||||||||||||||
Sbjct 1526 GTGCATATACAAAAAA 1541
Score = 200 bits (108), Expect = 3e-50
Identities = 130/140 (93%), Gaps = 4/140 (3%)
Strand=Plus/Plus
Query 1591 TATTTGTTGTTTTGTTTACCATCTTTTTCCGTGGTTGATTCAACGAGTTTTCAGCAAATT 1650
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1542 TATTTGTTGTTTTGTTTACCATCTTTTTCCGTGGTTGATTCAACGAGTTTTCAACAAATT 1601
Query 1651 AATTAGGTTTTGTTATTTTAATTACTTGAGTGAT--TT-ATTTTTGTGATTTGGAACTCT 1707
|||||||||||||||||||| |||| ||||||| || |||| |||||||||||||||
Sbjct 1602 AATTAGGTTTTGTTATTTTATTTACC-GAGTGATAATTTATTTGAGTGATTTGGAACTCT 1660
Query 1708 TTTGAGCTCAAATTGCTTAT 1727
| ||||||||||||||||||
Sbjct 1661 TATGAGCTCAAATTGCTTAT 1680
> Ahg349486 jgi|Araly1|349486|fgenesh1_pg.C_scaffold_6000079
Length=795
Score = 193 bits (104), Expect = 5e-48
Identities = 189/230 (82%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 973 GAGAGGAAGAAAGGTGTTCCATGGACAGAAGAAGAACACAGACAATTTCTGATGGGTTTG 1032
|||||||||||||| ||||| ||||| || || |||||| || |||||| |||||||||
Sbjct 421 GAGAGGAAGAAAGGAGTTCCGTGGACTGAGGACGAACACCTACTATTTCTAATGGGTTTG 480
Query 1033 AAGAAATATGGAAAAGGAGATTGGAGAAACATAGCTCGTAA-CTTTGTGACCACAAGAAC 1091
||||||||||||||||||||||||||||||||||| || |||||||| || | ||
Sbjct 481 AAGAAATATGGAAAAGGAGATTGGAGAAACATAGCAAA-AAGCTTTGTGAAGACTCGGAC 539
Query 1092 GCCAACGCAAGTCGCAAGTCACGCTCAAAAGTATTT-CATACGGCAAGTCA-ATGGTGGC 1149
||| ||||||||||| ||||||||||| ||||| | | || ||| ||| | | |||
Sbjct 540 GCCGACGCAAGTCGCTTCACACGCTCAAAAATATTTTCTT-CGACAACTCACA-GATGGT 597
Query 1150 AAAGACAAACGCCGTTCAAGCATCCATGATATCACAACCGTCAACATCCC 1199
||||||||| | || |||||||| || |||||||| ||||| ||||||||
Sbjct 598 AAAGACAAAAGACGATCAAGCATTCACGATATCACCACCGTTAACATCCC 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66581748260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5