BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38100.1
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321514 jgi|Araly1|321514|fgenesh1_pm.C_scaffold_4001571 2405 0.0
> Ahg321514 jgi|Araly1|321514|fgenesh1_pm.C_scaffold_4001571
Length=1566
Score = 2405 bits (1302), Expect = 0.0
Identities = 1480/1568 (94%), Gaps = 4/1568 (0%)
Strand=Plus/Plus
Query 1 ATGTCAGTTCTGTCATGGGCTTTTACCGTTGCGTGGTTTACCCTCTGGATGTTGATGCTA 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGTCAGTTCTGTCATGGGCTTTTACCGTTGCCTGGTTTACCCTCTGGATGTTGATGCTA 60
Query 61 TACTTGACGAACGAGATGAAGCTAAAGTTCACAGACGCAGCTGCGATTGTAAATGTGTTT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TACTTGACGAACGAGATGAAGCTAAAGTTCACGGACGCAGCTGCGATTGTAAATGTGTTT 120
Query 121 GCTGGTGTATCAGCTATTGGTCATCTTGGCATGCAATTTCTTGTTGATGCATTTATTGGT 180
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 121 GCTGGTGTATCAGCTATTGGTCATCTCAGCATGCAATTTCTAGTTGATGCATTTATTGGT 180
Query 181 CACTTTTGGATGCTCTGTCTCTCTACTTTAGCATTCAGTTTCGGTTTCGGGTTCTTGGCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CACTTTTGGATGCTCTGTCTCTCTACTTTAGCATTCAGTTTCGGTTTCGGGTTCTTGGCA 240
Query 241 ATATCAGCGTCACCAATACTTTCAGGCAATGGACAAAAGGGCCTGTTCTACGTAGCGCTA 300
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 241 ATATCAGCGTCACCAATACTTTCTGGCAATGGACAAAAGGGTCTGTTCTACGTAGCCCTA 300
Query 301 ACGGTTATATCCGTTGGTATATTTGGACGGTCTATCTCTTTGGGAGTATTTACAGAAGAC 360
|| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 301 ACAGTTATATCCGTTGGTATATTTGGAAGGTCTATCTCTCTGGGAGTATTTACAGAAGAC 360
Query 361 CAACTAGAAGACGGTAGGAACAAGGGAAACCCCGCCAAGCTCGTTAGCTTTGTCATTGGA 420
||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 361 CAATTAGAAGAAGGTAGGAACAAAGGAAACCCCGCGAAGCTCGTTAGCTTTGTCATTGGA 420
Query 421 AATGTGGGGAATTTTGTGTTCTTGTTACTTGCTGCTATTGCAATGCCTCAGATAAGTCCG 480
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AATGTTGGGAATCTTGTGTTCTTGTTACTTGCTGCTATTGCAATGCCTCAGATAAGTCCG 480
Query 481 TGGTTTGTTAGG-TTCACGATCCCCTCGGGCTGTGAGGTATTAGCAATGCTGATTTTTAT 539
|||||||| | | ||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 481 TGGTTTGT-ACGATTCGCGATCCCCTCGGGCTGTGAGGTATTAGCAATGATGATTTTTCT 539
Query 540 TTCCGGTGCGTGTTCATACAAACGGGTTAAACCAGGTGGGAGCCCTTTGACAACGGTTTT 599
|||||| |||||||||||| |||||| |||||||||||||||||||||||| | ||||
Sbjct 540 GTCCGGTACGTGTTCATACAGACGGGTAAAACCAGGTGGGAGCCCTTTGACAGCAATTTT 599
Query 600 CCGGGTCTTTATGGCTTCTGCTTCCAAAATGTCTTGTGCATACTCGAACAACTCAAGCCA 659
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 600 CCGGGTCTTTGTGGCTTCTGCTTCCAAAATGTCTTGTGCATACCCGAACAACTCAAGCCA 659
Query 660 GCTCTATGAAAAAGCTGAGTGTGATCAAGATATTAAGCCCCACACAAGCAGCTTAAGGTA 719
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 GCTCTATGAAAAAGCCGAGTGTGATCAAGATATTAAGCCCCACACAAGTAGCTTAAGGTG 719
Query 720 TCTAGATAGAGCTGCAATGATACTCCAAACAGAGTCTTTGGAACAACAGAGGAAAAACAG 779
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 CCTAGACAGAGCTGCAATGATACTCCAAACAGAGTCCTTGGAACAACAGAGGAAAAACAG 779
Query 780 ATGGAAGCTTTGTCGGGTGACAGAAGTGGAGCAAACGAAAAGCGTCATACGCACGGTTCC 839
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 780 ATGGAAGCTTTGTCGGGTGACGGAAGTGGAACAAACGAAAAGCGTCATACGCACGGTTCC 839
Query 840 TTTGTTTGCGACATCTCTCATTTCGGGGATTGTCTTCTCTCTTGGTAATACTTTCTTCCT 899
||||| |||||||||||||||||||||||||| ||||| || ||||| ||||| |||||
Sbjct 840 ATTGTTCGCGACATCTCTCATTTCGGGGATTGTTTTCTCCCTCGGTAACACTTTTTTCCT 899
Query 900 TGAACAAGCAAACCATATGGACTCCAAGTTCGGATCATGGAACCTTCCTCTCCCACTCCT 959
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 CGAACAAGCAAACCATATGGACTCCAAGTTCGGATCATGGAACCTCCCTCTCCCACTCCT 959
Query 960 CTTACTCTTTAGTGAAGCTGCAAGGCTAGGATCCCGAGAACTATGTGTCATGGCTGCAAA 1019
||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 960 CTTACTCTTTAGTGAGGCTGCAAGACTAGGATCCCGAGAACTATGCGTCATGGCTGCAAA 1019
Query 1020 ACGCCATGCCATTGACTTCCCTGAATCACCTAAACAAACCAAAACGCCTTATGGTATACC 1079
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACGCCACGCCATTGACCTCCCTGAATCACCTAAACAAACCAAAACGCCTTATGGTATACC 1079
Query 1080 AGTCTCCATCATCCTATCGATATTTTGCTGCTCCATCGCTGCACATGTTGAGTCTAGGAG 1139
|||||||||||||||||| || || |||||||| || |||||||| |||||||| |||||
Sbjct 1080 AGTCTCCATCATCCTATCCATCTTCTGCTGCTCAATTGCTGCACACGTTGAGTCCAGGAG 1139
Query 1140 GCTCAAAGTAGTTAGTACTCAAGGTTTACTACATGAAACTGTCCCCATGAGTGTATTCTG 1199
|||||||| ||||| ||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct 1140 ACTCAAAGTGGTTAGAACTCAAGGTTTGCTATATGAAACCGTCCCCATGAGTGTATTCTG 1199
Query 1200 GCTGCTCCCACAGTACATTCTACTCGGTTCAATCACAGGAATCTACGAAAACAGCTTTGC 1259
||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 1200 GCTACTCCCACAGTACATTCTTCTCGGGTCAATCACAGGTATCTACGAAAACAGCTTTGC 1259
Query 1260 GCTTTACCTAGAAGAAACGGTGCCTGAAGAGTTGAGCCAATACATGGTTCTATTAAACGT 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1260 GCTTTACCTAGAAGAAACGGTGCCTGAAGAGTTGAGCCAATACATGGTTCTATTTAACGT 1319
Query 1320 GGGAGTGTGCGGGGTCGGGATCATGAGCAACATTGCTCTTGTTAGTTTGGTGGGCAGTGT 1379
||| ||||||||||| |||||||||||||| || |||||||||||| |||||||||| ||
Sbjct 1320 GGGCGTGTGCGGGGTGGGGATCATGAGCAATATCGCTCTTGTTAGTGTGGTGGGCAGAGT 1379
Query 1380 AAGCGGAGGCAAATGGTTTCAAGACACAATAAACAAGAGCCGGGTGGATAACTATTATTG 1439
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1380 AAGCGGAGGCAAATGGTTTCAAGACACAATAAACAAGAGCCGGTTGGATAACTATTATTG 1439
Query 1440 GGTTATAACAGTGTTTTGCATGTTCAATCTCTTGTTATATTTCAT-TGTAACCTATAGGT 1498
||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 1440 GGTTATAACAGTGTTTTGCATGTTCAATCTCTTGTTATATTTC-TCTGTCACCTATAGGT 1498
Query 1499 ACACAGTGTGTAACAAGAAAGATGGTGCAACACAAGAAAATGATCGAAGGATAATCGCTT 1558
||||| |||| |||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1499 ACACAATGTGCAACAAGAAAGATGGTGCAACACAAGAAAATGATCGAAGAACAATCGGTT 1558
Query 1559 CTGTGTAG 1566
|||||||
Sbjct 1559 TTGTGTAG 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58658977300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5