BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38110.1
Length=1845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482818 jgi|Araly1|482818|fgenesh2_kg.4__1878__AT2G38110.1 2647 0.0
> Ahg482818 jgi|Araly1|482818|fgenesh2_kg.4__1878__AT2G38110.1
Length=1746
Score = 2647 bits (1433), Expect = 0.0
Identities = 1631/1728 (94%), Gaps = 7/1728 (0%)
Strand=Plus/Plus
Query 95 atct-tctcttttctcctctctcCAACTTCTTCACTAATGGGAGCTCAGGAGAAACGGCG 153
|||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 22 ATCTCTCTCTTCTCTTCTCTCTCCGGCTTCTTCACTAATGGGAGCTCAGGAGAAACGACG 81
Query 154 CCGTTTCGAGCAGATATCAAAGTGCGATGTTAAGGACCGGTCCAACCATACCGTGGCCGC 213
|||||||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||
Sbjct 82 TCGTTTCGAGCCGATATCAAAGTGCGACGTTAAGGACCGGTACAACCAAACCGTGGCCGC 141
Query 214 TGATCTAGACGGAACACTACTAATCTCTCGTAGCGCCTTCCCTTACTATTTCCTCGTAGC 273
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 142 TGATCTAGACGGGACACTACTGATCTCACGTAGCGCCTTCCCTTACTATTTCCTCGTAGC 201
Query 274 CCTCGAGGCAGGGAGCTTGCTCCGAGCGTTGATCCTACTTGTGTCCGTACCATTCGTTTA 333
||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 202 CCTCGAGGCAGGGGGCTTGCTCCGAGCATTGATCCTACTCGTGTCCGTACCGTTCGTTTA 261
Query 334 TCTTACGTACTTGACCATCTCCGAGACTTTAGCCATCAACGTATTTGTCTTCATCACGTT 393
|||||||||||||||| |||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 262 TCTTACGTACTTGACCGTCTCGGAGACTTTGGCCATCAACGTTTTTGTCTTCATCACGTT 321
Query 394 CGCGGGTCTCAAGATCCGAGACGTTGAGCTAGTGGTCCGTTCCGTCCTCCCGAGGTTCTA 453
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 TGCGGGTCTCAGGATCCGAGACGTTGAGCTAGTGGTCCGTTCCGTCCTCCCGAGGTTCTA 381
Query 454 TGCGGAGGACGTGAGGCCCGATACCTGGCGTATCTTCAACACGTTCGGGAAACGGTACAT 513
||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 382 CGCGGAGGACGTGAGGCCCGATACTTGGCGTATCTTTAACACGTTTGGGAAACGGTACAT 441
Query 514 AATAACTGCGAGCCCTCGAATTATGGTCGAGCCATTCGTGAAAACATTCCTAGGAGTTGA 573
| |||| ||||| |||||||| ||||||||||| |||||||| |||| ||||||||||||
Sbjct 442 AGTAACGGCGAGTCCTCGAATCATGGTCGAGCCGTTCGTGAAGACATACCTAGGAGTTGA 501
Query 574 TAAAGTTCTTGGAACAGAGCTAGAGGTCTCCAAATCGGGTCGGGCAACCGGGTTCACCAG 633
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TAAAGTTCTCGGAACAGAACTAGAGGTCTCCAAATCGGGTCGGGCAACCGGGTTCACCAG 561
Query 634 AAAACCAGGTATTCTCGTCGGTCAGTACAAACGTGACGTCGTTTTGAGAGAGTTTGGTGG 693
|||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct 562 AAAACCCGGTATTCTCGTGGGTCAGCACAAACGTGACGTCGTTTTGAGAGAGTTTGGTAG 621
Query 694 CCTAGCGTCTGATTTACCTGATTTGGGGCTCGGCGATAGCAAGACGGACCACGACTTCAT 753
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 CCTTGCGTCTGATTTACCTGATTTGGGGCTCGGCGATAGCAAGACGGACCACGACTTCAT 681
Query 754 GTCCATCTGCAAGGAAGGTTACATGGTGCCACGTACGAAATGCGAACCATTACCAAGAAA 813
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 682 GTCCATCTGCAAGGAAGGTTACATGGTGCCACGTACGAAATGCGAACCCTTACCAAGAAA 741
Query 814 CAAACTCTTAAGCCCCATAATATTCCACGAGGGCAGATTAGTCCAACGCCCAACGCCGTT 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 CAAACTCTTAAGCCCCATAATATTCCACGAGGGCAGATTAGTCCAACGCCCAACGCCGTT 801
Query 874 AGTTGCTCTGTTAACTTTCCTCTGGCTTCCCGTCGGTTTCGTCCTCTCTATCATCCGCGT 933
|||||||||||||||| |||| |||||||||||||||||| |||||||| | ||||||||
Sbjct 802 AGTTGCTCTGTTAACTCTCCTTTGGCTTCCCGTCGGTTTCCTCCTCTCTCTTATCCGCGT 861
Query 934 CTACACGAATATTCCGTTACCGGAACGTATCGCCCGTTACAACTACAAGCTTACTGGCAT 993
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 862 CTACACGAATATTCCGTTACCCGAACGTATCGCCCGTTACAACTACAAGCTCACTGGCAT 921
Query 994 CAAGCTAGTCGTCAACGGCCACCCTCCTCCGCCGCCAAAACCTGGCCAGCCAGGCCATCT 1053
||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 922 CAAGCTAATCGTCAACGGTCACCCTCCTCCGCCGCCAAAACCTGGCCAACCAGGCCATCT 981
Query 1054 TTTGGTCTGCAACCACCGCACCGTTCTCGATCCTGTGGTCACAGCTGTCGCACTCGGCCG 1113
||||| || |||||||||||||| || || || ||||| ||||| ||||| |||||| |
Sbjct 982 CTTGGTTTGTAACCACCGCACCGTCCTTGACCCGGTGGTGACAGCCGTCGCGCTCGGCAG 1041
Query 1114 GAAAATCAGCTGCGTCACTTACAGCATCAGCAAGTTCTCTGAGCTAATCTCACCAATCAA 1173
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1042 GAAAATCAGCTGCGTCACTTATAGCATCAGCAAGTTCTCTGAGCTAATCTCACCAATCAA 1101
Query 1174 AGCCGTTGCGTTGACTCGTCAACGTGAGAAAGACGCAGCGAACATCAAGCGTCTTTTGGA 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 AGCCGTTGCGTTGACTCGTCAACGTGAGAAAGACGCAGCGAACATCAAGCGTCTTTTGGA 1161
Query 1234 GGAAGGCGATCTCGTGATATGTCCCGAGGGAACCACGTGCCGTGAGCCTTTCCTTCTCCG 1293
||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1162 AGAAGGCGATCTTGTGATCTGTCCCGAGGGAACCACGTGCCGCGAGCCTTTCCTTCTCCG 1221
Query 1294 GTTTAGTGCTCTTTTCGCTGAGCTCACGGACCGGATCGTTCCCGTGGCGATCAACACAAA 1353
||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1222 GTTTAGTGCCCTCTTCGCTGAGCTCACGGACCGGATCGTTCCCGTGGCGATCAACACGAA 1281
Query 1354 GCAGAGCATGTTCAATGGTACCACCACACGTGGATACAAGCTTCTTGATCCTTACTTTGC 1413
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 1282 GCAGAGCATGTTCAATGGTACTACCACACGTGGCTACAAGCTTCTTGATCCTTACTTCGC 1341
Query 1414 GTTCATGAACCCGAGGCCGACGTATGAGATCACGTTCCTCAAACAGATTCCAGCTGAGCT 1473
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1342 GTTCATGAACCCGAGGCCGACGTACGAGATCACGTTCCTCAAACAGATTCCCGCTGAGCT 1401
Query 1474 GACGTGTAAAGGAGGCAAATCTCCGATAGAGGTTGCGAATTACATACAGAGGGTTTTGGG 1533
||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 1402 GACGTGTAAAGGAGGCAAATCGCCGATAGAGGTGGCGAATTACATCCAAAGGGTTTTGGG 1461
Query 1534 AGGAACCTTAGGTTTTGAGTGCACCAATTTCACAAGAAAGGATAAGTACGCAATGCTTGC 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 AGGAACCTTAGGTTTTGAGTGCACCAATTTCACAAGAAAGGATAAGTACGCAATGCTTGC 1521
Query 1594 TGGTACTGACGGTAGGGTTCCGGTGAAGAAGGAGAAGACGTGATTATTGATCGGAGGATG 1653
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1522 TGGTACCGACGGTAGGGTTCCGGTGAAGAAGGAGAAGACGTGATTATTGATCGGAGAATG 1581
Query 1654 GAGAAAACAAAGAAATAATACAAAGATTGGAATCTTTTT-CATTTGGATGGTTAATTATC 1712
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1582 GAGAAAACGAAGAAATAATACAAAGATTGGAATCTTTTTTCATTTGGATGGTTAATTATC 1641
Query 1713 AATACTTAAGGGGCAAAGAATTGATAAGTTTGTTTTT--GTTGTTACCTTTATCTTCTCT 1770
|||| |||||||||||||||||||||||||| ||||| |||||| |||||||||||||
Sbjct 1642 AATATTTAAGGGGCAAAGAATTGATAAGTTTATTTTTTTGTTGTTTTCTTTATCTTCTCT 1701
Query 1771 GCTTCGGTGAATGTTTCTTCAAGTTTTACATTTAGTACAATAACGGTT 1818
|||||| |||||||||| ||| ||||| ||||||||||||||||||
Sbjct 1702 GCTTCGATGAATGTTTC---AAGATTTACTTTTAGTACAATAACGGTT 1746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69286155655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5