BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38130.1
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321517 jgi|Araly1|321517|fgenesh1_pm.C_scaffold_4001574 959 0.0
> Ahg321517 jgi|Araly1|321517|fgenesh1_pm.C_scaffold_4001574
Length=573
Score = 959 bits (519), Expect = 0.0
Identities = 556/574 (97%), Gaps = 2/574 (0%)
Strand=Plus/Plus
Query 236 ATGGAGAAAGAGATGGAAGATAAAGAAGAATTCGATGAGGGTGAGATTGAGTACACGAGT 295
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAAAATATGGAAGATAAAGAAGAATTCGATGAGGGTGAGATTGAGTACACGAGT 60
Query 296 TATGCTGGTGAGCATCATCTGCCATTGATTATGTCTCTTGTTGACCAAGAACTTAGTGAA 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATGCTGGTGAGCATCATCTGCCATTGATTATGTCTCTTGTTGACCAAGAACTTAGTGAA 120
Query 356 CCTTACTCCATCTTTACTTACCGGTACTTCGTCTACCTCTGGCCGCAGCTATGCTTCCTG 415
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 121 CCTTACTCCATCTTTACTTACCGATACTTCGTCTACCTCTGGCCACAGCTATGCTTCCTG 180
Query 416 GCCTTTCACAAAGGTAAATGCGTAGGAACCATAGTCTGTAAGATGGGGGATCATCGACAG 475
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 GCCTTTCACAAAGGTAAATGCGTAGGAACTGTAGTCTGTAAGATGGGGGATCATCGACAG 240
Query 476 ACTTTCAGAGGGTACATCGCTATGTTGGTTGTGATTAAACCATATCGTGGCCGAGGCATA 535
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 241 ACTTTCAGAGGGTACATTGCCATGTTGGTTGTGATTAAACCATACCGTGGCCGAGGCATA 300
Query 536 GCCTCAGAGCTTGTCACAAGAGCGATAAAAGCGATGATGGAATCAGGCTGTGAAGAGGTA 595
||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 301 GCCTCAGAGCTGGTCACAAGATCGATAAAAGTGATGATGGAATCAGGCTGTGAAGAGGTA 360
Query 596 ACTCTGGAGGCAGAAGTGAGTAACAAAGGAGCATTAGCACTATATGGGCGACTCGGGTTT 655
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 ACTCTGGAGGCAGAAGTGAGTAACAAAGGAGCATTAGCACTATATGGGCGCCTCGGGTTT 420
Query 656 ATAAGAGCCAAACGGCTATACCACTATTACTTGAATGGGATGGATGCTTTTCGCCTGAAG 715
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATAAGGGCCAAACGGCTATACCACTATTACTTGAATGGGATGGATGCTTTTCGCCTGAAG 480
Query 716 CTCTTGTTCCCTAAGCCTCGTGTACCTCAAATACCTTCTCAAGTTCAAACCCAACAAGAG 775
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 CTCTTGTTCCCTAAGCCTCGTGTACCTCAAATACCTTCTCAAGATCAAACCCAACAAGAG 540
Query 776 TATGAGACCTTTCC-TAGGCCTCGTGTACCTTAA 808
|| ||||| ||||| |||||||||||||||||||
Sbjct 541 TACGAGAC-TTTCCCTAGGCCTCGTGTACCTTAA 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34691854470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5