BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38150.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901726 jgi|Araly1|901726|Al_scaffold_0004_2376 1748 0.0
> Ahg901726 jgi|Araly1|901726|Al_scaffold_0004_2376
Length=2253
Score = 1748 bits (946), Expect = 0.0
Identities = 1082/1148 (94%), Gaps = 7/1148 (1%)
Strand=Plus/Plus
Query 73 GAATCTCCAAAATCAACTCTCTATGACAATAACCTACCGTTCAAACCAAACGTGCCTCTT 132
|||||||| || || ||| ||| ||| ||||||| |||||||||||||||||||||||||
Sbjct 1111 GAATCTCCGAACTCTACTGTCTCTGATAATAACCCACCGTTCAAACCAAACGTGCCTCTT 1170
Query 133 CCCAGACCCTATGGCCCCATGAGTAGTAGTTGTAATATCAACTCAGTTGTGGACTCGGAG 192
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1171 CCCAGACCCTATGGCCCCATGAGTAGTAGCTGTAATATCAACTCAGTTTTGGACTCGGAG 1230
Query 193 CATAAAGAGAAGGAGTTAGATCCGTTGTTACCTCCTCGTAAAGCTAGCAAGAACCAGAGA 252
|||| || |||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 1231 TATAACGAAAAGGAGTTAGATCCGTTGGTGCCTCCTCGTAAAGCTAGCAAGAACGAGAGA 1290
Query 253 ATTGACTGGTTCAGAAGAAAGCTACCTGAGCTGGAGATACTGAAATCGACTACCAAGAGC 312
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1291 ATTGACTGGTTCAGAAGAAAGCTACCTGAGCTGGAGATACTGAAATCGACTACCAAGAAC 1350
Query 313 AAGAGTTTCCATACAAGAGTTTTGGACTTGTACAACAAGAATTGCTCTGCTCAGTTCTTT 372
||||| ||||||| |||||||||||||||||||| ||| |||||||| ||||||||||||
Sbjct 1351 AAGAGATTCCATAAAAGAGTTTTGGACTTGTACATCAACAATTGCTCAGCTCAGTTCTTT 1410
Query 373 ATGATTTGGCTTTCTCCTGCAAATTCTTTTGGACCAAGAGAGATGTTAGCTA-TTGATAC 431
||||| ||||||||||| ||||| || ||||||||||||||||||||||| | |||| ||
Sbjct 1411 ATGATCTGGCTTTCTCCCGCAAAATCCTTTGGACCAAGAGAGATGTTAGC-AGTTGACAC 1469
Query 432 TCTCTTCACCACCAATCCTGGTGCTTGCTTGGCGATTTTGTCCAACTCCTTAGACT-CCC 490
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1470 TCTCTTCACCACCAATCCTGGTGCTTGCTTGGCGATTTTGTCCAACTCCTTAGACTCCCC 1529
Query 491 CAAACGGATACACTATCCTTAAACCATTGTTTGATCAAGGTTTCAACCTCATTGCTGTAA 550
|| | |||||||| ||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 1530 CAGA-GGATACACCATCCTTAAACCATTGCTTGATCGAGGTTTCAACCTCATTGCTGTAA 1588
Query 551 CTATAGATATCCCGTTTCTCGTCAAGAACACTCCTGCTGAAGCTTGGCTGAAAAGGCTAA 610
|| ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 1589 CTTTAGATATCCCGTTCCTCGTCAAGAACACTCCTGCCGAGGCTTGGCTGAAAAGGCTAA 1648
Query 611 AGAGTGGCAACATGGATCCCGGTTCTATCCCCTTGTTCATGAATCTCTCTGATCTAACAA 670
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1649 AGAGTGGCCACATGGATCCCGGTTCTATCCCCTTGTTTATGAATCTCTCTGATCTAACAA 1708
Query 671 GACTCGCAGTACTCTACAAATACGGAGGAGTCTATCTAGACACAGACATCATCTTCCTCA 730
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1709 GACTCGCGGTACTCTACAAATACGGAGGAGTCTATCTAGACACAGACATCATCTTCCTTA 1768
Query 731 ACGACATGACAGGACTAAGAAACGCTATTGGAGCACAGAGTAGTGATCCAGCAACCAAGA 790
|||| ||||||||||| |||||||||||||| |||||||||| |||||||| ||||||||
Sbjct 1769 ACGATATGACAGGACTGAGAAACGCTATTGGTGCACAGAGTATTGATCCAGGAACCAAGA 1828
Query 791 GATGGACGAGACTAAACAACGCAGTGATGGTCTTTGACATCTACCATCCGCTAATGCGAG 850
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1829 GATGGACAAGACTAAACAACGCAGTGATGGTCTTTGACATCTACCATCCGCTTATGCGAG 1888
Query 851 AATTCTTGCAAGAGTATGCCACAACTTTCGACGGAAACAAATGGGGATACAACAGCCCTT 910
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1889 AATTCTTGCAAGAGTATGCCACAACATTCGACGGAAACAGATGGGGATACAACAGCCCTT 1948
Query 911 ACCTAGTCTCTAGAGTTATCAAGAGATTAGGAAACAAACCTGGATACAACAATCTCACAA 970
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1949 ACTTAGTCTCTAGAGTTATCAAGAGATTAGGAAACAAACCTGGATACAAC---CTCACAA 2005
Query 971 TCTTTTCTCCCGATGCTTTCTATCCAGTAAACTGGATCAAAATCCAAAAGCTTTTCAAGA 1030
||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2006 TCTTTTCCCCCGACGCTTTCTATCCAGTGAATTGGATCAAAATCCAAAAGCTTTTCAAGA 2065
Query 1031 AACCTGCAACCACAAGAGAAGCAAAATGGGTAGAGAAGACAGTACAGGACATGAACAAAG 1090
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2066 AACCTGCAACCACAAGAGAAGCAAAATGGGTAGAGAAGACGGTACAGGACATGAACAAAG 2125
Query 1091 GGAGTTACATGATACATCTGTGGAACAAAGTCACAAGGAAGATTAAGATTGAAGAAGGAA 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2126 GGAGTTACATGATACATCTGTGGAACAAAGTCACAAGGAAGATTAAGATTGAAGAAGGAA 2185
Query 1151 GTGTAATGCACACTCTCGTCTCCACTCACTGCACAGTCTGCGGAAACATCACAAACTCTC 1210
||||||||||||||||| |||||||||| |||||||||||| ||||||||||||| || |
Sbjct 2186 GTGTAATGCACACTCTCATCTCCACTCATTGCACAGTCTGCAGAAACATCACAAATTCCC 2245
Query 1211 ACATTTAA 1218
||| ||||
Sbjct 2246 ACACTTAA 2253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5