BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38152.1
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934527 jgi|Araly1|934527|scaffold_402515.1 1254 0.0
Ahg901726 jgi|Araly1|901726|Al_scaffold_0004_2376 1103 0.0
> Ahg934527 jgi|Araly1|934527|scaffold_402515.1
Length=1257
Score = 1254 bits (679), Expect = 0.0
Identities = 795/852 (93%), Gaps = 4/852 (0%)
Strand=Plus/Plus
Query 292 GAGGTTAGATTCTTCATGACATGGTTTTCACCAGCAGAGTATTTTGGGAAAAGAGAAATG 351
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
Sbjct 384 GAGGTTAGATTCTTCATGACATGGTTTTCACCAGCAGAGTTTTTTGGGAAGAGAGAACTT 443
Query 352 TTAGCTGTAGAAAGCGTCTTTAAAGCTCATCCTCAAGGATGCTTAATGATTGTATCAGGA 411
|| ||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |||
Sbjct 444 TTGGCTGTAGAAAGCGTCTTTAAATCACATCCTCGAGGATGCTTAATGATTGTATCGGGA 503
Query 412 TCCTTGGATTCCT-TACAAGGAGATAGCATCCTAAAGCCGCTAAATGATCGCGGTTACAA 470
||| |||| | || ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 504 TCCATGGAGT-CTCAACAAGGAGATAGCATCCTAAAACCGCTAATTGATCGCGGTTACAA 562
Query 471 AGTTTTTGCAGCCACACCAGACATGTCATTGCTTCTTGAGAACACACCGGCCAAATCTTG 530
||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 563 GGTTTTTGCAGCCACACCAGACATTTCATTGCTTCTTGAGAACACACCAGCTAAATCTTG 622
Query 531 GTTTCAAGAAATGAAAAGTTGCAAAAGAGATCCAGGAAGGATACCGTTACATCAGAATCT 590
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 623 GTTTCAAGAAATGAAAAGCTGCAAAAGAGATCCAGGAAGGATACCGTTACATCAGAATCT 682
Query 591 TTCAAACCTCGCGAGGCTAGCGTTTCTTTACAAGTACGGAGGTGTGTATCTAGATACCGA 650
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 683 TTCAAACCTCGCGAGGCTAGCAATTCTTTACAAGTACGGAGGTGTGTACCTAGATACCGA 742
Query 651 TTTCATCGTCACAAGAAGCTTTAAAGGGTTGAAGAATTCAATAGGAGCACAAACAGTAGT 710
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||| || |
Sbjct 743 TTTCATCGTCACAAGAAGCTTTAAAGGGTTGAGGAATTCAATAGGAGTACAAACATTACT 802
Query 711 GGAAGGAGATTCAAAGAACTGGACAAGGTTGAACAATGCGGTTCTGATCTTCGAGAAAGA 770
||| ||||||||||||||||||| || ||||||||| ||||||||||||||||| ||| |
Sbjct 803 GGAGGGAGATTCAAAGAACTGGAAAACGTTGAACAACGCGGTTCTGATCTTCGAAAAACA 862
Query 771 TCACCCGCTTGTTTACAGTTTCATAGAGGAGTTTGCTTCTACCTTTGATGGGAACAAATG 830
|||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||
Sbjct 863 TCACCCGCTTGTTTACAGTTTCATGGAGGAGTTTGCTTCGACTTTTGACGGGAACAAATG 922
Query 831 GGGACACAATGGTCCTTACTTGGTAACAAGAGTAGCACAAAGAGCACGAGAAACGATTGG 890
||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||
Sbjct 923 GGGACACAATGGTCCTTGCTTGGTAACAAGAGTAGTGCAAAGAGCAAGAGAAACGATTGG 982
Query 891 GGATAATTTCACAGTACTGCCACCAGTAGCATTCTATCCATTCAATTGGTTAGACATTCC 950
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 GGATAACTTCACAGTACTGCCACCAGTAGCATTCTATCCATTCAATTGGTTAGACATTCC 1042
Query 951 AAGACTGTTTCAAACGCCGAG-AGGAAGCAATGACTCAACGTTACTCAAAACCGATCTGG 1009
||||||||||||||||| || || | |||||||||| ||||||||||||||||||||||
Sbjct 1043 GAGACTGTTTCAAACGCCAAGGAGCA-GCAATGACTCGACGTTACTCAAAACCGATCTGG 1101
Query 1010 TGAAGCTGAATAGAGAAAGCTATGGGCTTCATCTATGGAACAAAATCACCAGAAAACTGA 1069
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| |
Sbjct 1102 TGAAGCTGAACAGAGAAAGCTATGGGCTGCATCTATGGAACAAGTTCACCAGAAAACTTA 1161
Query 1070 AGATCGGTAAGGGCAGTGTCATAGACATCATAATTTCAGACCACTGTGTTGTTTGCAGAG 1129
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1162 AGATCGGTAAGGGCAGTGTCATAGACATCATAGTTTCAGATCACTGTGTTGTTTGCAGAG 1221
Query 1130 GAATTCAGAGAT 1141
|||| |||||||
Sbjct 1222 GAATGCAGAGAT 1233
Score = 444 bits (240), Expect = 8e-124
Identities = 279/298 (94%), Gaps = 2/298 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAGGATAATTGTAACAAGAAGAGTCTCTCAGAAGTACTTGATGTCCGGCAATTC 60
|||||||| |||||| ||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct 21 ATGGAGAATGATAATAGTAGCAAGAAGAGTCTCTCGGAAGTACTTGATGTCCGGCAACTC 80
Query 61 AGGCACACGAATTCCCCGGTATTCTCTACCGCCATTTTTGCGGTCATAATGCTGCTCGTT 120
|||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||
Sbjct 81 AGGCACACGAATTCCCCGGTATTCTCTACCGCCATTTTCGGGGTCATAGTGCTGCTCGTT 140
Query 121 GTCGCGGGAACAATCCTCTCAAACATGTCCCTAAAATCAACTTTCTTCTGGTCTTCACCA 180
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 141 GTCGCGGGAACAATCCTCTCAAACATGTCTCTAGAATCAACTTTCTTCTGGTCTTCACCG 200
Query 181 ACCTCCGAGGTAATACAAACAAACAGAATGGAGAGGAAGTCATTGGCTCCTCCAAAGAAC 240
||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 201 ACCTCTGAGGTAATACAAATAAACAAAATGGAGAGAAAGTCATTGGCTCCTCCAAAGAAC 260
Query 241 ACTACAAGCAGAGACAGGATCGCTTGGCTTC-ACTCACATCTAACAGAATTCGAGGTT 297
| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 261 AGTACAAGCAGAGACAGGATCGCTTGGCTTCGA-TCACATCTTACAGAATTCGAGGTT 317
> Ahg901726 jgi|Araly1|901726|Al_scaffold_0004_2376
Length=2253
Score = 1103 bits (597), Expect = 0.0
Identities = 703/754 (93%), Gaps = 8/754 (1%)
Strand=Plus/Plus
Query 326 CAGAGTATTTT-GGGAAAAGAGAAATGTTAGCTGTAGAAAGCGTCTTTAAAGCTCATCCT 384
|||||| |||| ||||| |||||||| || ||||||||||||||||||||| ||||||||
Sbjct 362 CAGAGT-TTTTCGGGAAGAGAGAAATTTTGGCTGTAGAAAGCGTCTTTAAATCTCATCCT 420
Query 385 CAAGGATGCTTAATGATTGTATCAGGATCCTTGGATTCCT-TACAAGGAGATAGCATCCT 443
||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 421 CAAGGATGCTTAATGATTGTATCGGGATCCTTGGATT-CTCAACAAGGAGATAGCATCCT 479
Query 444 AAAGCCGCTAAATGATCGCGGTTACAAAGTTTTTGCAGCCACACCAGACATGTCATTGCT 503
||| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 480 AAAACCGCTAATTGATCGCGGTTACAAGGTTTTTGCAGCCACACCAGACATTTCATTGCT 539
Query 504 TCTTGAGAACACACCGGCCAAATCTTGGTTTCAAGAAATGAAAAGTTGCAAAAGAGATCC 563
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 TCTTGAGAACACCCCGGCTAAATCTTGGTTTCAAGAAATGAAAAGCTGCAAAAGAGATCC 599
Query 564 AGGAAGGATACCGTTACATCAGAATCTTTCAAACCTCGCGAGGCTAGCGTTTCTTTACAA 623
|||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 GGGAAAGATACCGTTACAGCAGAATCTTTCAAACCTCGCGAGGCTAGCAATTCTTTACAA 659
Query 624 GTACGGAGGTGTGTATCTAGATACCGATTTCATCGTCACAAGAAGCTTTAAAGGGTTGAA 683
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 GTACGGAGGTGTGTACCTAGATACCGATTTCATCGTCACAAGGAGCTTTAAAGGGTTGAA 719
Query 684 GAATTCAATAGGAGCACAAACAGTAGTGGAAGGAGATTCAAAGAACTGGACAAGGTTGAA 743
|||| | || || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 720 GAATACTATTGGCGCACAAACAGTGGTGGAAGGAGATTCAAAGAACTGGACAAGGTTGAA 779
Query 744 CAATGCGGTTCTGATCTTCGAGAAAGATCACCCGCTTGTTTACAGTTTCATAGAGGAGTT 803
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 780 CAACGCGGTTCTGATCTTCGAGAAAGATCACCCGCTTGTTTTCAGTTTCATAGAGGAGTT 839
Query 804 TGCTTCTACCTTTGATGGGAACAAATGGGGACACAATGGTCCTTACTTGGTAACAAGAGT 863
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 840 TGCTTCGACTTTTGATGGGAACAAATGGGGACACAATGGTCCTTACTTGGTAACCAGAGT 899
Query 864 AGCACAAAGAGCACGAGAAACGATTGGGGATAATTTCACAGTACTGCCACCAGTAGCATT 923
||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 900 AGCGCAAAGAGCACGAGAAACGACTGGGGACAATTTCACAGTACTGCCACCAGTAGCATT 959
Query 924 CTATCCATTCAATTGGTTAGACATTCCAAGACTGTTTCAAACGCCGAG-AGGAAGCAATG 982
||||||||||| ||||||| ||||||||||||||||||||||||| || || | ||||||
Sbjct 960 CTATCCATTCACTTGGTTAAACATTCCAAGACTGTTTCAAACGCCAAGGAGCA-GCAATG 1018
Query 983 ACTCAACGT-TACTCAAAACCGATCTGGTGAAGCTGAATAGAGAAAGCTATGGGCTTCAT 1041
|||| | | |||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1019 ACTCGA-GAATACTCAAAACCGATCTGGTGAAGCTGAACAGAGAAAGCTATGGGCTGCAT 1077
Query 1042 CTATGGAACAAAATCACCAGAAAACTGAAGATCG 1075
||||||||||| |||||||||||||| |||||||
Sbjct 1078 CTATGGAACAAGATCACCAGAAAACTTAAGATCG 1111
Score = 449 bits (243), Expect = 2e-125
Identities = 278/295 (94%), Gaps = 2/295 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAGGATAATTGTAACAAGAAGAGTCTCTCAGAAGTACTTGATGTCCGGCAATTC 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAATGATAATTGTAACAAGAAGAGTCTCTCAGAAGTACTTGATGTCCGGCAATTC 60
Query 61 AGGCACACGAATTCCCCGGTATTCTCTACCGCCATTTTTGCGGTCATAATGCTGCTCGTT 120
|||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||
Sbjct 61 AGGCACACGAATTCCCCGGTATTCTCTACCGCCATTTTCGGGGTCATAGTGCTGCTCGTT 120
Query 121 GTCGCGGGAACAATCCTCTCAAACATGTCCCTAAAATCAACTTTCTTCTGGTCTTCACCA 180
||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 121 GTCGCGGGAACAATCGTCTCAAACATGTCACTAGAATCAACTTTCTTCTGGTCTTCACCG 180
Query 181 ACCTCCGAGGTAATACAAACAAACAGAATGGAGAGGAAGTCATTGGCTCCTCCAAAGAAC 240
||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 181 ACCTCTGAGGTAATACAAATAAACAAAATGGAGAGAAAGTCATTGGCTCCTCCAAAGAAC 240
Query 241 ACTACAAGCAGAGACAGGATCGCTTGGCTTC-ACTCACATCTAACAGAATTCGAG 294
| |||||||||||| |||||||||||||||| | |||||||| ||||||||||||
Sbjct 241 AGTACAAGCAGAGAGAGGATCGCTTGGCTTCGA-TCACATCTTACAGAATTCGAG 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42621421206
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5