BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38170.3
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482825 jgi|Araly1|482825|fgenesh2_kg.4__1885__AT2G38170.1 2237 0.0
Ahg485541 jgi|Araly1|485541|fgenesh2_kg.5__1533__AT3G51860.1 826 0.0
> Ahg482825 jgi|Araly1|482825|fgenesh2_kg.4__1885__AT2G38170.1
Length=1782
Score = 2237 bits (1211), Expect = 0.0
Identities = 1353/1421 (95%), Gaps = 11/1421 (1%)
Strand=Plus/Plus
Query 1 ACAAAACAAACATAAAGAATCAGCAAAGCAAAATTCGAAGAG--A--C---ACaaaaaaa 53
||||||||||||||||||||||||||| |||||||||||||| | | |||||||||
Sbjct 1 ACAAAACAAACATAAAGAATCAGCAAAACAAAATTCGAAGAGACACCCAAAACAAAAAAA 60
Query 54 CCTTCGTTTGTGTCTCAGAATTTACAAAGTTTTGAGTCAGTAGAGAAATGGCGGGAATCG 113
|||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 61 ACTTCATTTGTGTCTCAGAATTTACAAAGTCTTGAATCAGTAGAGAAATGGCGGGAATCG 120
Query 114 TGACAGAGCCGTGGTCAGTAGCTGAGAACGGAAACCCAAGCATAACGGCGAAAGGATCGA 173
||||||||||||||||||| || |||||||| ||| ||||||| ||||| ||||||||||
Sbjct 121 TGACAGAGCCGTGGTCAGTGGCGGAGAACGGGAACGCAAGCATGACGGCCAAAGGATCGA 180
Query 174 GCAGAGAACTAAGACTTGGAAGAACCGCTCACAACATGTCTTCTTCTTCTTTGAGGAAAA 233
| |||||||| |||||||||||||| || || | |||||||||||||||| ||||||| |
Sbjct 181 GTAGAGAACTGAGACTTGGAAGAACAGCGCATAGCATGTCTTCTTCTTCTCTGAGGAAGA 240
Query 234 AATCAGACCTCCGAGTGATTCAGAAGGTTCCATACAAAGGTCTTAAAGATTTTCTCTCTA 293
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 241 AATCAGACCTCCGAGTGATTCAAAAGGTTCCATACAAAGGACTTAAAGATTTTCTCTCTA 300
Query 294 ATCTCCAAGAAGTCATTCTCGGAACAAAGCTTGCCATTCTTTTTCCGGCCATTCCTGCCG 353
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 301 ATCTTCAAGAAGTCATTCTCGGAACAAAGCTTGCCATTCTTTTTCCGGCCATACCCGCCG 360
Query 354 CCATTATTTGCACCTATTGTGGCGTCAGTCAGCCTTGGATATTTGGACTTAGCTTGCTAG 413
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCATTATTTGCACTTATTGTGGCGTCAGTCAGCCTTGGATATTTGGACTTAGCTTGCTAG 420
Query 414 GACTGACACCTTTGGCTGAGCGAGTCAGCTTTTTGACAGAGCAACTAGCTTTCTACACCG 473
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GACTGACTCCTTTGGCTGAGCGAGTCAGCTTTTTGACAGAGCAACTAGCTTTCTACACCG 480
Query 474 GTCCTACATTGGGTGGTCTATTGAACGCAACGTGTGGAAACGCGACTGAATTGATAATCG 533
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 481 GTCCTACATTGGGTGGTTTATTGAACGCAACTTGTGGAAACGCGACTGAATTGATAATCG 540
Query 534 CGATTCTTGCTTTGACCAATAACAAAGTCGCAGTGGTGAAATATTCGCTGCTAGGTTCGA 593
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 CAATTCTTGCTTTGACCAATAACAAGGTCGCAGTGGTGAAATATTCGCTGCTAGGTTCGA 600
Query 594 TTTTGTCGAACCTTTTATTGGTTCTAGGGACTTCACTCTTCTGTGGAGGAATCGCTAATA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTTGTCGAACCTTTTATTGGTTCTAGGGACTTCACTCTTCTGTGGAGGAATCGCTAATA 660
Query 654 TCCGAAGGGAACAGCGGTTCGACCGGAAACAAGCCGATGTGAACTTCTTCTTACTTCTAC 713
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCCGAAGGGAGCAGCGGTTCGACCGGAAACAAGCCGATGTGAACTTCTTCTTACTTCTAA 720
Query 714 TGGGTTTCTTGTGTCACTTGCTGCCATTGTTGGTGGGATACTTGAAAAACGGAGAGGCTT 773
|||||||||||||||||||||||||||||||||||| ||||||| ||||||| || |||
Sbjct 721 TGGGTTTCTTGTGTCACTTGCTGCCATTGTTGGTGGAATACTTGGCAAACGGAAAGACTT 780
Query 774 CGGCTGCTGTTTTGTCCGACATGCAACTGAGTATATCGCGAGGCTTCAGTATTGTTATGT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CGGCTGCTGTTTTGTCCGACATGCAACTGAGTATATCGCGAGGCTTCAGTATTGTTATGT 840
Query 834 TGATCAGCTACATTGCATATCTTGTTTTCCAACTGTGGACTCACCGCCAATTGTTCGATG 893
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 841 TGATCAGTTACATCGCATATCTTGTTTTCCAACTTTGGACTCACCGCCAATTGTTCGATG 900
Query 894 CACAAGAACAGGAAGATGAGTATGATGACGATGTGGAGCAAGAAACCGCGGTGATTAGTT 953
||||||| ||||| |||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 901 CACAAGATCAGGAGGATGAGTATGATGACGATGTGGAGGAAGAAACCGCGGTTATTAGTT 960
Query 954 TTTGGAGCGGTTTTG-CATGGTTGGTTGGGATGACACTCGTT-ATCGCATTGCTATCGGA 1011
||||||||||||||| | ||||||||||||||||||||| || |||||||||||||||||
Sbjct 961 TTTGGAGCGGTTTTGTC-TGGTTGGTTGGGATGACACTC-TTCATCGCATTGCTATCGGA 1018
Query 1012 GTATGTTGTAGCCACGATTGAGGAAGCATCGGATAAATGGAACTTATCAGTGAGTTTCAT 1071
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1019 GTATGTTGTAGCCACGATTGAGGAAGCATCAGATAAATGGAACTTATCAGTGAGTTTCAT 1078
Query 1072 AAGCATCATATTGCTTCCTATTGTTGGAAATGCAGCTGAACATGCTGGAGCCGTTATTTT 1131
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1079 AAGCATCATATTGCTTCCTATTGTTGGAAACGCAGCTGAACATGCTGGAGCCGTTATTTT 1138
Query 1132 TGCCTTTAAGAACAAGCTTGACATATCTTTGGGAGTTGCGTTAGGCTCTGCGACTCAGAT 1191
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1139 TGCCTTTAAGAACAAGCTCGACATATCTTTGGGAGTTGCATTAGGCTCTGCGACTCAGAT 1198
Query 1192 TGGCTTATTCGTTGTCCCCTTGACCATCATCGTGGCGTGGATTTTGGGAATTAATATGGA 1251
|||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct 1199 TGGCTTATTCGTCGTCCCCTTGACCATCGTCGTGGCATGGATTTTGGGAATTAACATGGA 1258
Query 1252 TCTCAATTTTGGTCCCCTCGAAACTGGCTGTCTTGCTGTTTCCATAATCATCACAGCGTT 1311
||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1259 TCTCAATTTCGGTCTCCTCGAAACTGGCTGTCTTGCTGTTTCCATTATCATCACAGCCTT 1318
Query 1312 CACATTACAGGATGGGAGTTCTCACTACATGAAGGGACTGGTCCTCTTGCTTTGCTATTT 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CACATTACAGGATGGGAGTTCTCACTACATGAAGGGACTGGTCCTCTTGCTTTGCTATTT 1378
Query 1372 CATTATTGCCATCTGTTTCTTCGTCGACAAACTTCCCCAGA 1412
|||||||||||| ||||||||||||||||||||||||||||
Sbjct 1379 CATTATTGCCATATGTTTCTTCGTCGACAAACTTCCCCAGA 1419
> Ahg485541 jgi|Araly1|485541|fgenesh2_kg.5__1533__AT3G51860.1
Length=1559
Score = 826 bits (447), Expect = 0.0
Identities = 1047/1330 (79%), Gaps = 68/1330 (5%)
Strand=Plus/Plus
Query 119 GAGCCGTGGTCAGTAGCTGAGAACGGAAACCCAAGCATAACGGCGAAAGGATCGAGCAGA 178
||||| ||| || | || |||||||||||| ||| | || || ||||| | ||||||
Sbjct 52 GAGCCATGGGCAATCGCCGAGAACGGAAACGCAAACGCGACCGCAAAAGGGTTAAGCAGA 111
Query 179 GAACTAAGACTTGGAAGAACCGCTCACAACATGTCTTCTTCTTCTTTGAGGAAA-AAATC 237
|| || ||| ||| ||||| || |||||||||||||| || || | | |||| |||||
Sbjct 112 GAGCTGCGACATGGGAGAACAGCACACAACATGTCTTCATCGTCGCT-AAGAAAGAAATC 170
Query 238 AGACCTCCGAGTGATTCAGAAGGTTCCATACAAAGGTCTTAAAG-ATTTTCTCTCTAATC 296
|||||| || |||||||||| ||||||| |||| |||| ||| | ||||||| ||||
Sbjct 171 AGACCTGAGATTGATTCAGAAAGTTCCATGCAAAACTCTT-AAGAACATTCTCTCCAATC 229
Query 297 TCCAAGAAGTCATTCTCGGAACAAAGCTTGCCAT-TCTT-TTTC-CGGCCATTCCTGC-C 352
| |||||||||||||| || || |||||| | | |||| |||| | ||||| ||| | |
Sbjct 230 TTCAAGAAGTCATTCTTGGTACTAAGCTT-AC-TCTCTTGTTTCTC-GCCATCCCT-CTC 285
Query 353 GCCATTATTTGCACCTATTGTGGCGTC-A-G-TCAG-CC-TTGGATATTTGGACTTAGCT 407
|||| | | | | || ||| | | | | | || | || || |||||||||||| ||||
Sbjct 286 GCCA-T-TCT-CGCCAATTCTTACCACTACGCTC-GTCCGTT-GATATTTGGACTGAGCT 340
Query 408 TGCTAGGACTGACACCTTTGGCTGAGCGAGTCAGCTTTTTGACAGAGCAACTAGCTTTCT 467
|| |||| ||||||||| | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 341 TGATAGGGCTGACACCTCTAGCTGAGCGAGTTAGCTTTTTGACAGAGCAACTAGCTTTCT 400
Query 468 ACACCGGTCCTACATTGGGTGGTCTATTGAACGCAACGTGTGGAAACGCGACTGAATTGA 527
|||| ||||| ||| |||| ||| | |||||||| || ||||||||||| || || |||
Sbjct 401 ACACTGGTCCAACAGTGGGAGGTTTGTTGAACGCGACTTGTGGAAACGCAACGGAGCTGA 460
Query 528 TAATCGCGATTCTTGCTTTGACCAATAACAAAGTCGCAGTGGTGAAATATTCGCTGCTAG 587
|||||||||| || || ||| ||||||||||||| |||||||||||||| || || | |
Sbjct 461 TAATCGCGATACTAGCGTTGGCCAATAACAAAGTGGCAGTGGTGAAATACTCTCTATTGG 520
Query 588 GTTCGATTTTGTCGAACCTTTTATTGGTTCTAGGGACTTCACTCTTCTGTGGAGGAATCG 647
|||| || | ||||||||| | |||||||| || ||||| ||||||| ||| || ||||
Sbjct 521 GTTCAATCCTCTCGAACCTTCTCTTGGTTCTTGGCACTTCCCTCTTCTTTGGTGGTATCG 580
Query 648 CTAATATCCGAAGGGAACAGCGGTTCGACCGGAAACAAGCCGATGTGAACTTCTTCTTAC 707
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 581 CCAATATCCGAAGGGAGCAGCGGTTCGACCGGAAACAAGCCGATGTGAACTTCTTCTTGC 640
Query 708 TTC-TACTGGGTTTCTTGTGTCACTTGCTGCCATTGTTGGTGGGATACTTG-A-AAAACG 764
| | || ||||| | |||||||| |||||||| || ||| | ||| || | || ||
Sbjct 641 TGCTTA-TGGGTCTGTTGTGTCATTTGCTGCCGTTATTGTTAAAATA--TGCAGCAACCG 697
Query 765 GAGAGGCTTCG-GCTGCTGT-TTTGTCCGACATG-CAACTGAGTATATCGCGAGGCT-TC 820
| || || ||| || || | || | | ||| | || | | | ||||| || |
Sbjct 698 GTGAAGCATCGACCT-CTCTGATT-AACAAAATGTC-GCTTACTCTGTCGCG-TACTAGC 753
Query 821 AGTATTGTTATG-TTGATCAGC-TACATTGCATATCTTGTTTTCCAACTGTGGACTCACC 878
|| || ||||| || || || |||||||| ||||| | ||||| || ||||||||||
Sbjct 754 AGCATACTTATGCTT-AT-TGCTTACATTGCTTATCTCATCTTCCAGCTCTGGACTCACC 811
Query 879 GCCAATTGTTCGATGCACAAGAACAGGAAGATGA-G--TATGATGACGA---T-GTGGAG 931
||||||| || || |||||||| | || ||||| | |||||||| || | || |
Sbjct 812 GCCAATTTTTTGAGGCACAAGAGGATGATGATGATGCATATGATGATGAGGTTACTGTTG 871
Query 932 CAAGAAAC-CGCGGTGATTA-GTTTTTGGAGCGGTTTTGCATGGTTGGTTGGGATGACAC 989
||||||| | | |||| || | || |||||||| ||||| ||| | ||||||||||||
Sbjct 872 -AAGAAACTC-CAGTGA-TAGGATTCTGGAGCGGATTTGCTTGGCTCGTTGGGATGACAA 928
Query 990 TCGTTATCGCATTGCTATCGGAGTATGTTGTAGCCACGATTGAGGAAGCATCGGA-TAAA 1048
|| | || ||||||||||| ||||||||||| ||||| |||||||| |||||||| | |
Sbjct 929 TCCTCATAGCATTGCTATCAGAGTATGTTGTGGCCACTATTGAGGATGCATCGGACT-CA 987
Query 1049 T-GGAACTTATCAGTGAGTTTCATAAGCATCATATTGCTTCCTATTGTTGGAAATGCAGC 1107
| || || |||||||||||||||||||||||||||||||||| |||||||| || || ||
Sbjct 988 TGGGGAC-TATCAGTGAGTTTCATAAGCATCATATTGCTTCCCATTGTTGGGAACGCGGC 1046
Query 1108 TGAACATGCTGGAGCCGTTATTTTTGCCTTTAAGAACAAGCTTGACATATCTTT-GGGAG 1166
||| || ||||||||| | ||||| || || ||||||||||| ||||||||| | ||| |
Sbjct 1047 TGAGCACGCTGGAGCCATCATTTTCGCATTCAAGAACAAGCTCGACATATCTCTAGGG-G 1105
Query 1167 TTGCGTTAGGCTCTGCGACTCAGATTGGCTTA-TTCGTTGTCCCCTTGACCATCATCGTG 1225
||||||| |||||||| ||||| ||| ||| ||||| ||||| |||| | |||||
Sbjct 1106 TTGCGTTGGGCTCTGCAACTCAAATTT-CTTTGTTCGTGGTCCCATTGAGTGTTATCGTT 1164
Query 1226 GCGTGGATTTTGGGAATTAATATGGATCTCAATTTTGGTCC-CCTCGAAACTGGCTGTCT 1284
|||||||| | ||||| || ||||||||||| || | ||| |||||| ||| |||
Sbjct 1165 GCGTGGATCCTAGGAATAAAAATGGATCTCAACTTCAA-CATCCTTGAAACTAGCTCTCT 1223
Query 1285 TGCTGTTT-CCATAATCATCACAGCGTTCACATTACAGGATGGGAGTTCTCACTACATGA 1343
||| || |||| ||||||||||| ||||||||||||||||| | |||||| |||||||
Sbjct 1224 AGCT-TTGGCCATTATCATCACAGCCTTCACATTACAGGATGGAACTTCTCATTACATGA 1282
Query 1344 AGGGACTGGTCCTCTTGCTT-TGCTATTTCATTATTGCCATCTGTTTCTTCGTCGAC-AA 1401
|||||||||| || ||| || |||||| |||| || || |||||||||||||||| ||
Sbjct 1283 AGGGACTGGTTCTATTG-TTGTGCTATGTCATCATCGCGGCCTGTTTCTTCGTCGACCAA 1341
Query 1402 ACTTCCCCAG 1411
| ||||||||
Sbjct 1342 A-TTCCCCAG 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59801684650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5