BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38180.1
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934530 jgi|Araly1|934530|scaffold_402518.1 1279 0.0
> Ahg934530 jgi|Araly1|934530|scaffold_402518.1
Length=927
Score = 1279 bits (692), Expect = 0.0
Identities = 815/874 (93%), Gaps = 9/874 (1%)
Strand=Plus/Plus
Query 68 TCGATCATGGTTGGACCAGTAAGACCTCAAATCGTACTTTTCGGTTCTTCAATTGTTCAA 127
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 17 TCGATCATGGTTGGACCAGTAAGACCTCAAATCGTTCTTTTCGGTTCTTCAATTGTTCAA 76
Query 128 TATAGCTTCACTGATCGTGGTTGGGGTGCCACTCTCGCTGACCTCTACTCTCGCACGGCT 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 TATAGCTTCACTGATCGTGGTTGGGGTGCCACTCTCGCTGACCTCTACTCTCGCACGGCT 136
Query 188 GATATCATTCTTCGTGGATATGCTGGTTGGAATTCTAGGTTTGCCTTGAAGGTTCTTCAC 247
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 GACATCATCCTTCGTGGCTATGCTGGTTGGAATTCTAGGTTTGCCTTGAAGGTTCTTCAC 196
Query 248 CAAGTATTCCCAAAGGATGCTGTGATACAACCTTCTTTGGTGATAGTCTATTTCGGTGGG 307
||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 197 CAAGTCTTCCCAAAGGATGCTGTGATACAACCTTCTCTGGTGATAGTCTATTTTGGTGGG 256
Query 308 AATGATTCAACTCATCCTCATCCTTCAGGTCATGGCCCTCATGTTCCTTTATCTGAATTC 367
||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct 257 AATGATTCAACGCATCCTCATCCATCAGGTCATGGACCTCATGTTCCTCTATCTGAATTC 316
Query 368 ATCGAAAACATGAGGAAGATTGGTGAACATCTTTTGAGCCTTTCTGATAAAACTCGTGTC 427
||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||
Sbjct 317 ATCGAAAACATGAGGAAGATTGGAGAACATCTTTTGAGTCTTTCGGATAAGACTCGTGTC 376
Query 428 ATTTTCCTCACTCCGCCACCAATGAATGAGAAACAGATCGA-GATAGTTTTTGGAGATGC 486
||||||||||||||||| || |||||||||||||||||||| | | |||||||||||||
Sbjct 377 ATTTTCCTCACTCCGCCGCCTATGAATGAGAAACAGATCGAAG-TCGTTTTTGGAGATGT 435
Query 487 AATAAAAGGCCGGAGTAACGAGTTGTGCCGTCCATATGCAGAAGAGTTGTTAAATCTATG 546
||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 436 AATAAGAGGCCGGAGTAATGAACTGTGCCGTCCATATGCAGAAGAGTTGTTAAATCTATG 495
Query 547 CAGAGAGATCAATGTGAAAGGTATCGATATTTGGACCGCGATACAGCAGCAAGATGATTG 606
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 496 CAGAGAGATTAATGTGAAAGGTATCGATATTTGGACCGCAATACAGCAGCAAGATGATTG 555
Query 607 GTTGAACAGCTGCTTCACAGATGGGATCCATTTCACTGCGAAGGCAAGTGAGATTGTTGT 666
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
Sbjct 556 GTTGAACAGCTGCTTCACAGATGGGATCCATTTCACAGCGAAGGCAAGCGAGATTGTTAT 615
Query 667 TAAGGAGATATTGAAGGTACTGAGAGGAGCGGATTGGAAACCAAGTCTTTACTGGAAATC 726
||||||||||||||||||| || ||| ||||||||||||||| |||||||||||||| ||
Sbjct 616 TAAGGAGATATTGAAGGTAGTGCGAGAAGCGGATTGGAAACCGAGTCTTTACTGGAAGTC 675
Query 727 ATTACCGGTTGAATTTCCATTTGATTTTGATGCTCCAAACTCTATAAGCCTTCATGACCT 786
||||||||||| ||||||||||||||||||| ||||||||||||||| ||| |||| ||
Sbjct 676 GTTACCGGTTGAGTTTCCATTTGATTTTGATGTTCCAAACTCTATAAGTCTTTATGATCT 735
Query 787 AGAGTTAACCAGAAACAACCATTTTGAGTCA-CCGCAC-CTTGTAAGCCTTTGTGAACAA 844
||||||||| || |||||||| |||||| || || ||| || |||||||||||||| |||
Sbjct 736 AGAGTTAACTAGGAACAACCAGTTTGAG-CAACCACACACT-GTAAGCCTTTGTGACCAA 793
Query 845 GAGTTAACCAGAAAC--G-AGCAGCTGGAGCCGCCACACCCTGTAAGCCTTTGTGACCAT 901
||||||||||||||| | ||||||||||||| | ||||||| ||||||||||||||||
Sbjct 794 GAGTTAACCAGAAACAAGCAGCAGCTGGAGCCACAACACCCTCTAAGCCTTTGTGACCAC 853
Query 902 GAGTTAACCCGAAACGAGCAGCTGGAGCCGCCAC 935
||||||||| ||||||||||||||||||| ||||
Sbjct 854 GAGTTAACCAGAAACGAGCAGCTGGAGCCACCAC 887
Score = 110 bits (59), Expect = 3e-23
Identities = 101/121 (83%), Gaps = 3/121 (2%)
Strand=Plus/Plus
Query 761 CCAAACTCTATAAGCCTTCATGACCTAGAGTTAACCAGAAACAA-C--CATTTTGAGTCA 817
||| || || |||||||| ||||| |||||||||||||||||| | || | ||| ||
Sbjct 767 CCACACACTGTAAGCCTTTGTGACCAAGAGTTAACCAGAAACAAGCAGCAGCTGGAGCCA 826
Query 818 CCGCACCTTGTAAGCCTTTGTGAACAAGAGTTAACCAGAAACGAGCAGCTGGAGCCGCCA 877
| |||| | ||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 827 CAACACCCTCTAAGCCTTTGTGACCACGAGTTAACCAGAAACGAGCAGCTGGAGCCACCA 886
Query 878 C 878
|
Sbjct 887 C 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43536371214
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5