BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38185.4
Length=1946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321523 jgi|Araly1|321523|fgenesh1_pm.C_scaffold_4001580 1751 0.0
> Ahg321523 jgi|Araly1|321523|fgenesh1_pm.C_scaffold_4001580
Length=2490
Score = 1751 bits (948), Expect = 0.0
Identities = 1224/1349 (91%), Gaps = 52/1349 (4%)
Strand=Plus/Plus
Query 134 ATGGATTCAGCTCCTTCTCCATCATCTCTGGACTTTGAATTATCTCCTCCGGTATTGGTT 193
||||| |||||||||||||||||||| | |||| |||||| ||||||||||||||||||
Sbjct 1 ATGGACTCAGCTCCTTCTCCATCATCGCCGGACCTTGAATCATCTCCTCCGGTATTGGTC 60
Query 194 ACAATGACTTCAACCTCATCTTCGGCTTCTGATAACGTCGAAGGAGCTGATGATGATGCT 253
||||||| ||||||||||||||| || | ||||||||||||||| |||||||||||||
Sbjct 61 ACAATGAATTCAACCTCATCTTCTTCTGATAATAACGTCGAAGGAGATGATGATGATGCT 120
Query 254 AATACTCATGGGATTTTCAATTGGAGAGATTTTTCCTCTTGTTGGAGAGTTTCAGAGTCG 313
|| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GCTAATCATGAGATTTTCAATTGGAGAGAATTTTCCTCTTGTTGGAGAGTTTCAGAGTCG 180
Query 314 AACTTGTACTGCTTCAGTTTAGCTCTTCTTATCTGGTTCTTTGCTTCGTTTATTCTGATT 373
|||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 181 AACTTGTACTGCTTTAGTTTGGCTCTTCTTGTCTGGTTCTTTGCTTCGTTTATTCTGATT 240
Query 374 GAGAATCTTTACGGACCAAAAAATGTCTGGCTTGGACCCAGTTCGTCAATTCTTGTTGAA 433
|||||||||||||||||||||| ||||||||||||||||| ||| || ||||| ||||||
Sbjct 241 GAGAATCTTTACGGACCAAAAAGTGTCTGGCTTGGACCCAATTCTTCCATTCTCGTTGAA 300
Query 434 CCAAGCTCTATTTTTGTCAAAAGCATTAA-G--GTTAAAGTGCTT-GATTACTC-AGAAC 488
|||||||| |||||||||||||||||||| | ||||||||| || ||||| || | |||
Sbjct 301 CCAAGCTCCATTTTTGTCAAAAGCATTAAGGTTGTTAAAGTG-TTAGATTATTCTA-AAC 358
Query 489 CAGGGCTTCAGCTT-TATGGGTTCTATAGAACTCCTGCTCTGGATTGTTTTGTCAACTGG 547
||||||||||| || ||||||||||||||| ||||||||||||||||||| ||||| |||
Sbjct 359 CAGGGCTTCAG-TTATATGGGTTCTATAGATCTCCTGCTCTGGATTGTTTCGTCAATTGG 417
Query 548 TCTGAATCCCGAGTGTTATCTATCTCACATGAATCTTACAAGGGATGGCCATATTATCTC 607
|| |||||||||||| | || | | || | ||||||||||||||||
Sbjct 418 TCGGAATCCCGAGTG---T-TA---C-C-TG-----T-------ATGGCCATATTATCTC 456
Query 608 AACAGTGGGTCATTGTTGAATATTACATATACCGTTAAACCACAAGGTTCTGCGGTTCAG 667
||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 AACAGACGGACTTTGTTGAATATTACATATACCGTTAAACCACAAGGTTCTGCGGTTCAG 516
Query 668 CTTGTGGTCGATGAAGGACATCAAGGCGTTCCTCAGTCGGTTTTGAACGACCCTGCATAT 727
|||||||| || |||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 517 CTTGTGGTTGACGAAGGACATCAAGGCGACCCTCAGTCGTTTTTGAACGACCCTGCATAT 576
Query 728 CGTTACAATGTTTGGTCGTGGAATCTAATTGAAGGGAGTGGTATGATTCAATTGGAGATA 787
|||||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||||
Sbjct 577 CGTTACAAAGTTTGGTCATGGAATCTAATTGAGGGGAGTGGTATGATTGAATTGGAGATA 636
Query 788 AGAAAGTCTTCAAGTTATTATCTTGCTGTAGCTAACTTGAAGAGCAAGGACGTAGAGGTA 847
||||||||||||||||||||||||||||||||||||||||||| | || | | |
Sbjct 637 AGAAAGTCTTCAAGTTATTATCTTGCTGTAGCTAACTTGAAGA-C---GA---A-A-G-- 685
Query 848 ACCACTACTGATCAAGTGGAACTGAATATTGATGTGAAGGCTGTCTTGTATGATACTAAA 907
| | || | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 A-C-GTA--G---AGGTGGAACTGAATATTGATGTGAAGGCTGTCTTGTATGATACTAAA 738
Query 908 CAATCATTCTACAACTGTAACTTCAGCAATGGCGAGTGCACATTCAATGCAATGTCCCTT 967
||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 739 CAATCATTCTATAACTGTAACTTCAGCAATGGCGAGTGCACATTCAATGTTATGCCCCTT 798
Query 968 GTTGGAAATTCTGTTGTCGTAACTTCACCAGCAGCGAGTCAGGGAGTATCCATTGAAGAT 1027
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 799 GTTGGAAATTCTGTTGTCGTAACTTCACCAGCAGTGAGTCAGGGAGTATCCATTGAAGAT 858
Query 1028 GAATGGTATATCAGGTTCTCATATCAACCTAGAGAAATTGCATATGTAATCGGCACAGGT 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 GAATGGTATATCAGGTTCTCATATCAACCTAGAGAAATTGCATATGTAATCGGCACAGGT 918
Query 1088 GTGGTGATTTGCTTCATGTTGGTAGCTATACAGTTCTGCAACAGGTTTCAGTGC-AGTGG 1146
|||||||||||||||||||||||||||||||| ||||||||||| || || ||| | |||
Sbjct 919 GTGGTGATTTGCTTCATGTTGGTAGCTATACAATTCTGCAACAGATTACAATGCTA-TGG 977
Query 1147 TGGAGAGGGACATCTAACCGAGGATGATTCAGCGAGAACACGTCTACTTGCAGACAAAGA 1206
|||||||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||
Sbjct 978 TGGAGAGGGACATCTAACCGAGAATGATTCAGGGAGAACACGTCTACTTGAAAACAAAGA 1037
Query 1207 TGACGATGGTTCAAGCATGGGTTCGTGTGACGATTCTTAT-GCAAACGATGATGCTGACT 1265
||| |||||||||||||||||||| ||| | ||||||| | ||||||||||||||||| |
Sbjct 1038 TGATGATGGTTCAAGCATGGGTTCATGTAATGATTCTT-TCGCAAACGATGATGCTGATT 1096
Query 1266 TAGAAGAGTTTATGGGAAATGATGGTGAAGCAAGTAACCGAAGTAGACGTCTCTGTGCCA 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 TAGAAGAGTTTATGGGAAATGATGGTGAAGCAAGTAACCGAAGTAGACGTCTCTGTGCCA 1156
Query 1326 TTTGTTTTGATGTTCCAAGAGATTGCTTTTTCCTCCCTTGTGGTCATTCCGTCTCCTGTT 1385
|||||||||||| |||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 1157 TTTGTTTTGATGCTCCAAGAGATTGCTTTTTCCTCCCATGTGGCCATAGCGTCTCCTGTT 1216
Query 1386 ATGAATGCGGAACAACGATGCAAGAAGCTGATGGGAGTTGTCCAATATGTCGAAGGAAAA 1445
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1217 ATGAATGCGGAACAACGATGCAAGAAGCTGATGGGAGTTGTCCAATCTGTAGAAGGAAAA 1276
Query 1446 TGAAGAAAGTGAAGCGAATCTATACAGTG 1474
||||||||||||||||||||| |||||||
Sbjct 1277 TGAAGAAAGTGAAGCGAATCTTTACAGTG 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73133270400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5