BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G38185.4 Length=1946 Score E Sequences producing significant alignments: (Bits) Value Ahg321523 jgi|Araly1|321523|fgenesh1_pm.C_scaffold_4001580 1751 0.0 > Ahg321523 jgi|Araly1|321523|fgenesh1_pm.C_scaffold_4001580 Length=2490 Score = 1751 bits (948), Expect = 0.0 Identities = 1224/1349 (91%), Gaps = 52/1349 (4%) Strand=Plus/Plus Query 134 ATGGATTCAGCTCCTTCTCCATCATCTCTGGACTTTGAATTATCTCCTCCGGTATTGGTT 193 ||||| |||||||||||||||||||| | |||| |||||| |||||||||||||||||| Sbjct 1 ATGGACTCAGCTCCTTCTCCATCATCGCCGGACCTTGAATCATCTCCTCCGGTATTGGTC 60 Query 194 ACAATGACTTCAACCTCATCTTCGGCTTCTGATAACGTCGAAGGAGCTGATGATGATGCT 253 ||||||| ||||||||||||||| || | ||||||||||||||| ||||||||||||| Sbjct 61 ACAATGAATTCAACCTCATCTTCTTCTGATAATAACGTCGAAGGAGATGATGATGATGCT 120 Query 254 AATACTCATGGGATTTTCAATTGGAGAGATTTTTCCTCTTGTTGGAGAGTTTCAGAGTCG 313 || ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 121 GCTAATCATGAGATTTTCAATTGGAGAGAATTTTCCTCTTGTTGGAGAGTTTCAGAGTCG 180 Query 314 AACTTGTACTGCTTCAGTTTAGCTCTTCTTATCTGGTTCTTTGCTTCGTTTATTCTGATT 373 |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 181 AACTTGTACTGCTTTAGTTTGGCTCTTCTTGTCTGGTTCTTTGCTTCGTTTATTCTGATT 240 Query 374 GAGAATCTTTACGGACCAAAAAATGTCTGGCTTGGACCCAGTTCGTCAATTCTTGTTGAA 433 |||||||||||||||||||||| ||||||||||||||||| ||| || ||||| |||||| Sbjct 241 GAGAATCTTTACGGACCAAAAAGTGTCTGGCTTGGACCCAATTCTTCCATTCTCGTTGAA 300 Query 434 CCAAGCTCTATTTTTGTCAAAAGCATTAA-G--GTTAAAGTGCTT-GATTACTC-AGAAC 488 |||||||| |||||||||||||||||||| | ||||||||| || ||||| || | ||| Sbjct 301 CCAAGCTCCATTTTTGTCAAAAGCATTAAGGTTGTTAAAGTG-TTAGATTATTCTA-AAC 358 Query 489 CAGGGCTTCAGCTT-TATGGGTTCTATAGAACTCCTGCTCTGGATTGTTTTGTCAACTGG 547 ||||||||||| || ||||||||||||||| ||||||||||||||||||| ||||| ||| Sbjct 359 CAGGGCTTCAG-TTATATGGGTTCTATAGATCTCCTGCTCTGGATTGTTTCGTCAATTGG 417 Query 548 TCTGAATCCCGAGTGTTATCTATCTCACATGAATCTTACAAGGGATGGCCATATTATCTC 607 || |||||||||||| | || | | || | |||||||||||||||| Sbjct 418 TCGGAATCCCGAGTG---T-TA---C-C-TG-----T-------ATGGCCATATTATCTC 456 Query 608 AACAGTGGGTCATTGTTGAATATTACATATACCGTTAAACCACAAGGTTCTGCGGTTCAG 667 ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 457 AACAGACGGACTTTGTTGAATATTACATATACCGTTAAACCACAAGGTTCTGCGGTTCAG 516 Query 668 CTTGTGGTCGATGAAGGACATCAAGGCGTTCCTCAGTCGGTTTTGAACGACCCTGCATAT 727 |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 517 CTTGTGGTTGACGAAGGACATCAAGGCGACCCTCAGTCGTTTTTGAACGACCCTGCATAT 576 Query 728 CGTTACAATGTTTGGTCGTGGAATCTAATTGAAGGGAGTGGTATGATTCAATTGGAGATA 787 |||||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||| Sbjct 577 CGTTACAAAGTTTGGTCATGGAATCTAATTGAGGGGAGTGGTATGATTGAATTGGAGATA 636 Query 788 AGAAAGTCTTCAAGTTATTATCTTGCTGTAGCTAACTTGAAGAGCAAGGACGTAGAGGTA 847 ||||||||||||||||||||||||||||||||||||||||||| | || | | | Sbjct 637 AGAAAGTCTTCAAGTTATTATCTTGCTGTAGCTAACTTGAAGA-C---GA---A-A-G-- 685 Query 848 ACCACTACTGATCAAGTGGAACTGAATATTGATGTGAAGGCTGTCTTGTATGATACTAAA 907 | | || | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 686 A-C-GTA--G---AGGTGGAACTGAATATTGATGTGAAGGCTGTCTTGTATGATACTAAA 738 Query 908 CAATCATTCTACAACTGTAACTTCAGCAATGGCGAGTGCACATTCAATGCAATGTCCCTT 967 ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 739 CAATCATTCTATAACTGTAACTTCAGCAATGGCGAGTGCACATTCAATGTTATGCCCCTT 798 Query 968 GTTGGAAATTCTGTTGTCGTAACTTCACCAGCAGCGAGTCAGGGAGTATCCATTGAAGAT 1027 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 799 GTTGGAAATTCTGTTGTCGTAACTTCACCAGCAGTGAGTCAGGGAGTATCCATTGAAGAT 858 Query 1028 GAATGGTATATCAGGTTCTCATATCAACCTAGAGAAATTGCATATGTAATCGGCACAGGT 1087 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 859 GAATGGTATATCAGGTTCTCATATCAACCTAGAGAAATTGCATATGTAATCGGCACAGGT 918 Query 1088 GTGGTGATTTGCTTCATGTTGGTAGCTATACAGTTCTGCAACAGGTTTCAGTGC-AGTGG 1146 |||||||||||||||||||||||||||||||| ||||||||||| || || ||| | ||| Sbjct 919 GTGGTGATTTGCTTCATGTTGGTAGCTATACAATTCTGCAACAGATTACAATGCTA-TGG 977 Query 1147 TGGAGAGGGACATCTAACCGAGGATGATTCAGCGAGAACACGTCTACTTGCAGACAAAGA 1206 |||||||||||||||||||||| ||||||||| ||||||||||||||||| | ||||||| Sbjct 978 TGGAGAGGGACATCTAACCGAGAATGATTCAGGGAGAACACGTCTACTTGAAAACAAAGA 1037 Query 1207 TGACGATGGTTCAAGCATGGGTTCGTGTGACGATTCTTAT-GCAAACGATGATGCTGACT 1265 ||| |||||||||||||||||||| ||| | ||||||| | ||||||||||||||||| | Sbjct 1038 TGATGATGGTTCAAGCATGGGTTCATGTAATGATTCTT-TCGCAAACGATGATGCTGATT 1096 Query 1266 TAGAAGAGTTTATGGGAAATGATGGTGAAGCAAGTAACCGAAGTAGACGTCTCTGTGCCA 1325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1097 TAGAAGAGTTTATGGGAAATGATGGTGAAGCAAGTAACCGAAGTAGACGTCTCTGTGCCA 1156 Query 1326 TTTGTTTTGATGTTCCAAGAGATTGCTTTTTCCTCCCTTGTGGTCATTCCGTCTCCTGTT 1385 |||||||||||| |||||||||||||||||||||||| ||||| ||| ||||||||||| Sbjct 1157 TTTGTTTTGATGCTCCAAGAGATTGCTTTTTCCTCCCATGTGGCCATAGCGTCTCCTGTT 1216 Query 1386 ATGAATGCGGAACAACGATGCAAGAAGCTGATGGGAGTTGTCCAATATGTCGAAGGAAAA 1445 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 1217 ATGAATGCGGAACAACGATGCAAGAAGCTGATGGGAGTTGTCCAATCTGTAGAAGGAAAA 1276 Query 1446 TGAAGAAAGTGAAGCGAATCTATACAGTG 1474 ||||||||||||||||||||| ||||||| Sbjct 1277 TGAAGAAAGTGAAGCGAATCTTTACAGTG 1305 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73133270400 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5