BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38230.1
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934533 jgi|Araly1|934533|scaffold_402521.1 1591 0.0
> Ahg934533 jgi|Araly1|934533|scaffold_402521.1
Length=975
Score = 1591 bits (861), Expect = 0.0
Identities = 934/970 (96%), Gaps = 1/970 (0%)
Strand=Plus/Plus
Query 1 TCTCAAAACCCTAG-AAAAAATGGCAGGAACCGGAGTTGTGGCGGTGTACGGCGAAGGAG 59
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 6 TCTCAAAACCCTAGAAAAAAATGGCAGCAACCGGAGTTGTGGCGGTGTACGGCGAAGGAG 65
Query 60 CCATGACGGAGACGAAACAGAAATCTCCCTTCTCCGTGAAAGTTGGTCTCGCTCAGATGC 119
|| ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 66 CCGTGACGGAGACGAAGCAGAAATCTCCCTTCTCCGTCAAGGTTGGTCTCGCTCAGATGC 125
Query 120 TTCGTGGCGGTGTAATCATGGATGTCGTCAACGCAGAGCAAGCTCGAATCGCTGAAGAAG 179
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 126 TTCGTGGCGGTGTAATCATGGACGTCGTCAACGCAGAGCAAGCTCGAATCGCTGAAGAAG 185
Query 180 CTGGCGCATGCGCCGTGATGGCTCTTGAACGTGTTCCCGCCGATATTCGAGCTCAAGGCG 239
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 CCGGCGCTTGCGCCGTGATGGCTCTTGAACGTGTTCCCGCCGATATTCGAGCTCAAGGCG 245
Query 240 GTGTTGCTCGAATGAGCGATCCAGAGATGATCAAAGAAATCAAAAACGCCGTGACGATTC 299
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 246 GTGTTGCTCGAATGAGCGATCCTGAGATGATTAAAGAAATCAAAAACGCCGTGACGATCC 305
Query 300 CGGTGATGGCGAAAGCTAGAATTGGTCATTTCGTTGAAGCTCAGATCCTGGAAGCAATCG 359
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 306 CGGTGATGGCTAAAGCTAGAATTGGTCATTTCGTTGAAGCTCAGATCTTGGAAGCAATCG 365
Query 360 GAGTTGATTACGTCGACGAGAGTGAAGTTCTCACTCTCGCCGACGAAGATAATCACATCA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GAGTTGATTACGTCGACGAGAGTGAAGTTCTCACTCTCGCCGACGAAGATAATCACATCA 425
Query 420 ACAAACATAATTTCAAAATCCCTTTTGTTTGTGGATGTAGGAATCTCGGTGAAGCTTTAA 479
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 426 ACAAACATAATTTCAAAATCCCTTTTGTCTGTGGATGTAGGAACCTCGGTGAAGCTTTAA 485
Query 480 GGCGGATCCGTGAAGGAGCCGCCATGATAAGAACCAAAGGTGAGGCTGGAACTGGTAACG 539
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 486 GGCGGATCCGTGAAGGAGCCGCCATGATAAGAACTAAAGGAGAGGCTGGAACTGGAAACG 545
Query 540 TTGTTGAAGCCGTTAGGCACGTGAGGAGTGTGAACGGAGCTATTCGGTTACTTAGAAGCA 599
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 546 TCGTTGAAGCCGTTAGGCACGTGAGGAGTGTGAACGGAGCTATTCGGTTACTTAGAAACA 605
Query 600 TGGACGATGACGAGGTTTTCACTTACGCGAAAAAGATCGCTGCGCCGTATGATTTGGTTG 659
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 606 TGGACGATGACGAAGTTTTCACTTTCGCGAAAAAGATCGCTGCGCCGTATGATTTGGTTG 665
Query 660 TGCAGACTAAGGAGCTTGGGAGGTTACCGGTGGTTCAGTTCGCTGCTGGAGGAGTGGCGA 719
||||||| ||||||||||||||||||||||||||||| |||||||| || ||||| ||||
Sbjct 666 TGCAGACGAAGGAGCTTGGGAGGTTACCGGTGGTTCAATTCGCTGCCGGGGGAGTTGCGA 725
Query 720 CGCCGGCGGATGCGGCGTTGATGATGCAGTTGGGATGTGATGGAGTGTTTGTTGGGTCGG 779
| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 CTCCCGCGGACGCGGCTTTGATGATGCAGTTGGGATGTGATGGAGTGTTTGTTGGGTCGG 785
Query 780 GTGTTTTCAAGAGTGGAGATCCGGTGAAGAGGGCTAAGGCTATTGTTCAGGCGGTTACGA 839
|||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 786 GTGTTTTCAAGAGTGGAGATCCGGTGAAAAGGGCTAAGGCGATTGTGCAGGCGGTTACGA 845
Query 840 ATTATAGAGACGCGGCGGTGTTGGCGGAGGTGAGCTGTGGTTTAGGTGAAGCCATGGTTG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 ATTATAGAGACGCGGCGGTGTTGGCGGAGGTGAGCTGTGGTTTAGGTGAAGCCATGGTTG 905
Query 900 GTCTTAATTTGGATGATAAGGTTGAGAGGTTCGCTAGTCGTTCTGAGTAACCAATCAAAT 959
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 906 GTCTTAATTTGGATGATAAGGTTGAGAGGTTCGCTAGCCGTTCTGAGTAACCAATCAAAT 965
Query 960 TTCAGATGTT 969
||||||||||
Sbjct 966 TTCAGATGTT 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39190358676
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5