BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G38230.1 Length=1053 Score E Sequences producing significant alignments: (Bits) Value Ahg934533 jgi|Araly1|934533|scaffold_402521.1 1591 0.0 > Ahg934533 jgi|Araly1|934533|scaffold_402521.1 Length=975 Score = 1591 bits (861), Expect = 0.0 Identities = 934/970 (96%), Gaps = 1/970 (0%) Strand=Plus/Plus Query 1 TCTCAAAACCCTAG-AAAAAATGGCAGGAACCGGAGTTGTGGCGGTGTACGGCGAAGGAG 59 |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 6 TCTCAAAACCCTAGAAAAAAATGGCAGCAACCGGAGTTGTGGCGGTGTACGGCGAAGGAG 65 Query 60 CCATGACGGAGACGAAACAGAAATCTCCCTTCTCCGTGAAAGTTGGTCTCGCTCAGATGC 119 || ||||||||||||| |||||||||||||||||||| || ||||||||||||||||||| Sbjct 66 CCGTGACGGAGACGAAGCAGAAATCTCCCTTCTCCGTCAAGGTTGGTCTCGCTCAGATGC 125 Query 120 TTCGTGGCGGTGTAATCATGGATGTCGTCAACGCAGAGCAAGCTCGAATCGCTGAAGAAG 179 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 126 TTCGTGGCGGTGTAATCATGGACGTCGTCAACGCAGAGCAAGCTCGAATCGCTGAAGAAG 185 Query 180 CTGGCGCATGCGCCGTGATGGCTCTTGAACGTGTTCCCGCCGATATTCGAGCTCAAGGCG 239 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 186 CCGGCGCTTGCGCCGTGATGGCTCTTGAACGTGTTCCCGCCGATATTCGAGCTCAAGGCG 245 Query 240 GTGTTGCTCGAATGAGCGATCCAGAGATGATCAAAGAAATCAAAAACGCCGTGACGATTC 299 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| | Sbjct 246 GTGTTGCTCGAATGAGCGATCCTGAGATGATTAAAGAAATCAAAAACGCCGTGACGATCC 305 Query 300 CGGTGATGGCGAAAGCTAGAATTGGTCATTTCGTTGAAGCTCAGATCCTGGAAGCAATCG 359 |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 306 CGGTGATGGCTAAAGCTAGAATTGGTCATTTCGTTGAAGCTCAGATCTTGGAAGCAATCG 365 Query 360 GAGTTGATTACGTCGACGAGAGTGAAGTTCTCACTCTCGCCGACGAAGATAATCACATCA 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 366 GAGTTGATTACGTCGACGAGAGTGAAGTTCTCACTCTCGCCGACGAAGATAATCACATCA 425 Query 420 ACAAACATAATTTCAAAATCCCTTTTGTTTGTGGATGTAGGAATCTCGGTGAAGCTTTAA 479 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 426 ACAAACATAATTTCAAAATCCCTTTTGTCTGTGGATGTAGGAACCTCGGTGAAGCTTTAA 485 Query 480 GGCGGATCCGTGAAGGAGCCGCCATGATAAGAACCAAAGGTGAGGCTGGAACTGGTAACG 539 |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||| Sbjct 486 GGCGGATCCGTGAAGGAGCCGCCATGATAAGAACTAAAGGAGAGGCTGGAACTGGAAACG 545 Query 540 TTGTTGAAGCCGTTAGGCACGTGAGGAGTGTGAACGGAGCTATTCGGTTACTTAGAAGCA 599 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 546 TCGTTGAAGCCGTTAGGCACGTGAGGAGTGTGAACGGAGCTATTCGGTTACTTAGAAACA 605 Query 600 TGGACGATGACGAGGTTTTCACTTACGCGAAAAAGATCGCTGCGCCGTATGATTTGGTTG 659 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 606 TGGACGATGACGAAGTTTTCACTTTCGCGAAAAAGATCGCTGCGCCGTATGATTTGGTTG 665 Query 660 TGCAGACTAAGGAGCTTGGGAGGTTACCGGTGGTTCAGTTCGCTGCTGGAGGAGTGGCGA 719 ||||||| ||||||||||||||||||||||||||||| |||||||| || ||||| |||| Sbjct 666 TGCAGACGAAGGAGCTTGGGAGGTTACCGGTGGTTCAATTCGCTGCCGGGGGAGTTGCGA 725 Query 720 CGCCGGCGGATGCGGCGTTGATGATGCAGTTGGGATGTGATGGAGTGTTTGTTGGGTCGG 779 | || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 726 CTCCCGCGGACGCGGCTTTGATGATGCAGTTGGGATGTGATGGAGTGTTTGTTGGGTCGG 785 Query 780 GTGTTTTCAAGAGTGGAGATCCGGTGAAGAGGGCTAAGGCTATTGTTCAGGCGGTTACGA 839 |||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| Sbjct 786 GTGTTTTCAAGAGTGGAGATCCGGTGAAAAGGGCTAAGGCGATTGTGCAGGCGGTTACGA 845 Query 840 ATTATAGAGACGCGGCGGTGTTGGCGGAGGTGAGCTGTGGTTTAGGTGAAGCCATGGTTG 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 846 ATTATAGAGACGCGGCGGTGTTGGCGGAGGTGAGCTGTGGTTTAGGTGAAGCCATGGTTG 905 Query 900 GTCTTAATTTGGATGATAAGGTTGAGAGGTTCGCTAGTCGTTCTGAGTAACCAATCAAAT 959 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 906 GTCTTAATTTGGATGATAAGGTTGAGAGGTTCGCTAGCCGTTCTGAGTAACCAATCAAAT 965 Query 960 TTCAGATGTT 969 |||||||||| Sbjct 966 TTCAGATGTT 975 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39190358676 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5