BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38240.1
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482833 jgi|Araly1|482833|fgenesh2_kg.4__1893__AT2G38240.1 2017 0.0
Ahg497538 jgi|Araly1|497538|fgenesh2_kg.811__1__AT2G38240.1 1899 0.0
> Ahg482833 jgi|Araly1|482833|fgenesh2_kg.4__1893__AT2G38240.1
Length=1339
Score = 2017 bits (1092), Expect = 0.0
Identities = 1260/1342 (94%), Gaps = 8/1342 (1%)
Strand=Plus/Plus
Query 1 ACCATCTACAACTTTCATTCTTCCACTACATTTCTCTCCTTGAGTATCTTCTTATCC-TA 59
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1 ACCATCTACAACATTCATTCTTCCACTACATTTCTCTCCTTGAGTATCTTCATATCCTTT 60
Query 60 TTTTCCAAATTCCAAAACAATTCACAAAATGGCTACATGCTGGCCTGAGCCGATTGTTTC 119
||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 TTTTCTAACTTCCAAAACAATTCACAAAATGGCTACATGCTGGCCTGAGCCAATTGTTTC 120
Query 120 CGTGCAATCCTTGTCCCAAACCGGTGTACCAACTGTACCAAACCGCTATGTGAAGCCGGC 179
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 121 CGTGCAATCCTTGTCCCAAACCGGTGTACCAACTGTACCAAACCGCTATGTAAAACCGGC 180
Query 180 TCATCAGAGACCGGTCTTTAACACCACCCAATCCGATGCTGGGATAGAAATCCCTGTTCT 239
||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 181 TCATCAGAGACCGGTCTTTAACACCACCCAATCCGATGCTGAGATGGAAATCCCCGTTCT 240
Query 240 AGACATGAACGACGTTTGGGGGAAACCAGAGGGGCTAAGGCTCGTGAGGAGCGCGTGTGA 299
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 AGACATGGACGACGTTTGGGGGAAACCAGAGGGGTTAAGGCTCGTGAGGAGCGCGTGTGA 300
Query 300 GGAGTGGGGTTTCTTCCAAATGGTGAACCATGGTGTGACCCACTCGTTGATGGAGAGAGT 359
|||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 301 GGAGTGGGGTTTTTTCCAAATGGTGAACCATGGTGTGAACCACTCGCTGATGGAGAGCGT 360
Query 360 GAGAGGAGCGTGGCGAGAGTTCTTCGAGCTACCGCTAGAGGAGAAACGGAAGTATGCAAA 419
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 GAGAGGAGCGTGGCGAGAGTTCTTCGAGCTACCGCTAGACGAGAAACGGAAGTATGCAAA 420
Query 420 CTCACCGGACACGTACGAGGGATATGGAAGCCGCCTTGGGGTTGTGAAAGATGCTAAATT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTCACCGGACACGTACGAGGGATATGGAAGCCGCCTTGGGGTTGTGAAAGATGCTAAATT 480
Query 480 AGATTGGAGTGATTATTTCTTCCTCAATTACTTGCCTTCTTCCATAAGAAACCCTTCCAA 539
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 481 AGATTGGAGTGATTATTTCTTCCTCAATTACTTGCCTTCTTCCATAAGAAGCCCCTCCAA 540
Query 540 GTGGCCATCTCAGCCTCCTAAGATCAGAGAATTGATCGAAAAGTACGGAGAAGAAGTGAG 599
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 541 GTGGCCATCTCAGCCTCCTAAGATCAGAGAATTGATTGAAGAGTACGGAGAAGAAGTGAA 600
Query 600 AAAACTGTGCGAAAGGCTAACAGAGACGTTGTCAGAGAGTTTAGGTTTAAAACCAAACAA 659
|||||||||||| ||||| || ||||| ||||||||||||||||||||| |||||||| |
Sbjct 601 AAAACTGTGCGAGAGGCTGACGGAGACATTGTCAGAGAGTTTAGGTTTAGAACCAAACCA 660
Query 660 GCTCATGCAGGCTTTAGGAGGAGGCGACAAAGTCGGAGCTTCTCTGAGGACAAACTTCTA 719
|||||| ||||||||||||||| |||||||||||||||||||| |||||||||| |||
Sbjct 661 TCTCATGAAGGCTTTAGGAGGAGAAGACAAAGTCGGAGCTTCTCTCAGGACAAACTACTA 720
Query 720 CCCAAAATGCCCTCAGCCGCAGCTCACTTTAGGTCTCTCTTCTCATTCTGACCCTGGAGG 779
|||||||||||||||||| || |||||| ||||||| ||||| |||||||||||||| ||
Sbjct 721 CCCAAAATGCCCTCAGCCACATCTCACTCTAGGTCTATCTTCCCATTCTGACCCTGGTGG 780
Query 780 CATCACCATTCTTCTCCCGGACGAGAAGGTCGCTGGCCTTCAGGTCCGTCGTGGTGATGG 839
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 781 CATCACCATTCTTCTCCCGGACGAGAAGGTCGCTGGCCTCCAGGTCCGTCGTTGTGATGG 840
Query 840 CTGGGTCACCATTAAATCAGTCCCTAATGCTTTGATCGTTAACATTGGAGATCA-ACTTC 898
|||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||| | |||
Sbjct 841 CTGGATCACCGTTAAATCAGTCCCCAATGCTTTGATCGTTAACATTGGGGATCAGA-TTC 899
Query 899 AGATACTTAGCAATGGAATTTACAAAAGCGTGGAACATCAAGTGATCGTTAATTCCGGTA 958
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 900 AGATACTTAGCAATGGAATTTACAAAAGTGTGGAGCATCAAGTGATCGTTAATTCCGGTA 959
Query 959 TGGAACGAGTCTCTTTGGCATTCTTCTATAACCCGAGAAGTGATATCCCGGTTGGACCAA 1018
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 960 TGGAACGAGTCTCTTTGGCATTCTTCTATAACCCGAGAAGTGATATCCCGATTGGACCAA 1019
Query 1019 TCGAAGAACTAGTAACTGCAAACCGACCTGCTCTTTATAAACCAATCAGGTTCGACGAGT 1078
|||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1020 TCGAAGAACTAGTAACAGAAAACCGACCTGCTCTTTATAAACCGATCAGGTTCGACGAGT 1079
Query 1079 ACCGTTCTCTGATAAGGCAAAAGGGTCCTTGTGGAAAAAACCAAGTCGACTCACTGTTAT 1138
|||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||
Sbjct 1080 ACCGTTCTCTGATACGGCAAAAGGGTCCTTGTGGAAAAAACCAGGTTGATTCACTGTTAT 1139
Query 1139 TAACTAGATAATAATTGATAAACATTCCAAGTATTATCTGTTATTCCTATGTCCTTGATA 1198
||| ||||| |||||||||| ||||||||||||| |||| ||||||||||||||||||||
Sbjct 1140 TAAGTAGATGATAATTGATACACATTCCAAGTATAATCTCTTATTCCTATGTCCTTGATA 1199
Query 1199 TAGTCGTTACTAAATAATATGTAAACCGTATCTT--CACTTTTTCTTATTATATTGCTGC 1256
|||| ||||||||||||||||||||||||||||| |||| | | | || ||||||||||
Sbjct 1200 TAGTTGTTACTAAATAATATGTAAACCGTATCTTTACACTATATAT-AT-ATATTGCTGC 1257
Query 1257 TCTCTCTTGAGGTTTGATATTGTTAATTTCACATAGT-TTAGTTGTAGAATTTGCCATTA 1315
|||||| |||||||||||| ||||||||||||| | ||||||||||||||| ||||||
Sbjct 1258 TCTCTCCTGAGGTTTGATAATGTTAATTTCACAAAAACTTAGTTGTAGAATTTACCATTA 1317
Query 1316 ATCCAATGAAATTATGGTTGGC 1337
||| |||||||||||||||||
Sbjct 1318 GTCCCATGAAATTATGGTTGGC 1339
> Ahg497538 jgi|Araly1|497538|fgenesh2_kg.811__1__AT2G38240.1
Length=1221
Score = 1899 bits (1028), Expect = 0.0
Identities = 1158/1222 (95%), Gaps = 4/1222 (0%)
Strand=Plus/Plus
Query 1 ACCATCTACAACTTTCATTCTTCCACTACATTTCTCTCCTTGAGTATCTTCTTATCC-TA 59
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1 ACCATCTACAACATTCATTCTTCCACTACATTTCTCTCCTTGAGTATCTTCATATCCTTT 60
Query 60 TTTTCCAAATTCCAAAACAATTCACAAAATGGCTACATGCTGGCCTGAGCCGATTGTTTC 119
||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 TTTTCTAACTTCCAAAACAATTCACAAAATGGCTACATGCTGGCCTGAGCCAATTGTTTC 120
Query 120 CGTGCAATCCTTGTCCCAAACCGGTGTACCAACTGTACCAAACCGCTATGTGAAGCCGGC 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 CGTGCAATCCTTGTCCCAAACCGGTGTACCAACTGTACCAAACCGCTATGTAAAGCCGGC 180
Query 180 TCATCAGAGACCGGTCTTTAACACCACCCAATCCGATGCTGGGATAGAAATCCCTGTTCT 239
||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 181 TCATCAGAGACCGGTCTTTAACACCACCCAATCCGATGCTGAGATGGAAATCCCCGTTCT 240
Query 240 AGACATGAACGACGTTTGGGGGAAACCAGAGGGGCTAAGGCTCGTGAGGAGCGCGTGTGA 299
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 AGACATGGACGACGTTTGGGGGAAACCAGAGGGGTTAAGGCTCGTGAGGAGCGCGTGTGA 300
Query 300 GGAGTGGGGTTTCTTCCAAATGGTGAACCATGGTGTGACCCACTCGTTGATGGAGAGAGT 359
|||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 301 GGAGTGGGGTTTTTTCCAAATGGTGAACCATGGTGTGAACCACTCGCTGATGGAGAGCGT 360
Query 360 GAGAGGAGCGTGGCGAGAGTTCTTCGAGCTACCGCTAGAGGAGAAACGGAAGTATGCAAA 419
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 GAGAGGAGCGTGGCGAGAGTTCTTCGAGCTACCGCTAGACGAGAAACGGAAGTATGCAAA 420
Query 420 CTCACCGGACACGTACGAGGGATATGGAAGCCGCCTTGGGGTTGTGAAAGATGCTAAATT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTCACCGGACACGTACGAGGGATATGGAAGCCGCCTTGGGGTTGTGAAAGATGCTAAATT 480
Query 480 AGATTGGAGTGATTATTTCTTCCTCAATTACTTGCCTTCTTCCATAAGAAACCCTTCCAA 539
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 481 AGATTGGAGTGATTATTTCTTCCTCAATTACTTGCCTTCTTCCATAAGAAGCCCCTCCAA 540
Query 540 GTGGCCATCTCAGCCTCCTAAGATCAGAGAATTGATCGAAAAGTACGGAGAAGAAGTGAG 599
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 541 GTGGCCATCTCAGCCTCCTAAGATCAGAGAATTGATTGAAGAGTACGGAGAAGAAGTGAA 600
Query 600 AAAACTGTGCGAAAGGCTAACAGAGACGTTGTCAGAGAGTTTAGGTTTAAAACCAAACAA 659
|||||||||||| ||||| || ||||| ||||||||||||||||||||| |||||||| |
Sbjct 601 AAAACTGTGCGAGAGGCTGACGGAGACATTGTCAGAGAGTTTAGGTTTAGAACCAAACCA 660
Query 660 GCTCATGCAGGCTTTAGGAGGAGGCGACAAAGTCGGAGCTTCTCTGAGGACAAACTTCTA 719
|||||| ||||||||||||||| |||||||||||||||||||| |||||||||| |||
Sbjct 661 TCTCATGAAGGCTTTAGGAGGAGAAGACAAAGTCGGAGCTTCTCTCAGGACAAACTACTA 720
Query 720 CCCAAAATGCCCTCAGCCGCAGCTCACTTTAGGTCTCTCTTCTCATTCTGACCCTGGAGG 779
|||||||||||||||||| || |||||| ||||||| ||||| |||||||||||||| ||
Sbjct 721 CCCAAAATGCCCTCAGCCACATCTCACTCTAGGTCTATCTTCCCATTCTGACCCTGGTGG 780
Query 780 CATCACCATTCTTCTCCCGGACGAGAAGGTCGCTGGCCTTCAGGTCCGTCGTGGTGATGG 839
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 781 CATCACCATTCTCCTCCCGGACGAGAAGGTCGCTGGCCTCCAGGTCCGTCGTGGTGATGG 840
Query 840 CTGGGTCACCATTAAATCAGTCCCTAATGCTTTGATCGTTAACATTGGAGATCA-ACTTC 898
|||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||| | |||
Sbjct 841 CTGGATCACCGTTAAATCAGTCCCCAATGCTTTGATCGTTAACATTGGGGATCAGA-TTC 899
Query 899 AGATACTTAGCAATGGAATTTACAAAAGCGTGGAACATCAAGTGATCGTTAATTCCGGTA 958
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 900 AGATACTTAGCAATGGAATTTACAAAAGTGTGGAGCATCAAGTGATCGTTAATTCCGGTA 959
Query 959 TGGAACGAGTCTCTTTGGCATTCTTCTATAACCCGAGAAGTGATATCCCGGTTGGACCAA 1018
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 960 TGGAACGAGTCTCTTTGGCATTCTTCTATAACCCGAGAAGTGATATCCCGATTGGACCAA 1019
Query 1019 TCGAAGAACTAGTAACTGCAAACCGACCTGCTCTTTATAAACCAATCAGGTTCGACGAGT 1078
|||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1020 TCGAAGAACTAGTAACAGAAAACCGACCTGCTCTTTATAAACCGATCAGGTTCGACGAGT 1079
Query 1079 ACCGTTCTCTGATAAGGCAAAAGGGTCCTTGTGGAAAAAACCAAGTCGACTCACTGTTAT 1138
|||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||
Sbjct 1080 ACCGTTCTCTGATACGGCAAAAGGGTCCTTGTGGAAAAAACCAGGTTGATTCACTGTTAT 1139
Query 1139 TAACTAGATAATAATTGATAAACATTCCAAGTAT-TATCTGTTATTCCTATGTCCTTGAT 1197
||| ||||| |||||||||| ||||||||||||| ||||| |||||||||||||||||||
Sbjct 1140 TAAGTAGATGATAATTGATACACATTCCAAGTATATATCTCTTATTCCTATGTCCTTGAT 1199
Query 1198 ATAGTCGTTACTAAATAATATG 1219
||||||||||||||||||||||
Sbjct 1200 ATAGTCGTTACTAAATAATATG 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50017267104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5