BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G38240.1 Length=1337 Score E Sequences producing significant alignments: (Bits) Value Ahg482833 jgi|Araly1|482833|fgenesh2_kg.4__1893__AT2G38240.1 2017 0.0 Ahg497538 jgi|Araly1|497538|fgenesh2_kg.811__1__AT2G38240.1 1899 0.0 > Ahg482833 jgi|Araly1|482833|fgenesh2_kg.4__1893__AT2G38240.1 Length=1339 Score = 2017 bits (1092), Expect = 0.0 Identities = 1260/1342 (94%), Gaps = 8/1342 (1%) Strand=Plus/Plus Query 1 ACCATCTACAACTTTCATTCTTCCACTACATTTCTCTCCTTGAGTATCTTCTTATCC-TA 59 |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1 ACCATCTACAACATTCATTCTTCCACTACATTTCTCTCCTTGAGTATCTTCATATCCTTT 60 Query 60 TTTTCCAAATTCCAAAACAATTCACAAAATGGCTACATGCTGGCCTGAGCCGATTGTTTC 119 ||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 61 TTTTCTAACTTCCAAAACAATTCACAAAATGGCTACATGCTGGCCTGAGCCAATTGTTTC 120 Query 120 CGTGCAATCCTTGTCCCAAACCGGTGTACCAACTGTACCAAACCGCTATGTGAAGCCGGC 179 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 121 CGTGCAATCCTTGTCCCAAACCGGTGTACCAACTGTACCAAACCGCTATGTAAAACCGGC 180 Query 180 TCATCAGAGACCGGTCTTTAACACCACCCAATCCGATGCTGGGATAGAAATCCCTGTTCT 239 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| Sbjct 181 TCATCAGAGACCGGTCTTTAACACCACCCAATCCGATGCTGAGATGGAAATCCCCGTTCT 240 Query 240 AGACATGAACGACGTTTGGGGGAAACCAGAGGGGCTAAGGCTCGTGAGGAGCGCGTGTGA 299 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 241 AGACATGGACGACGTTTGGGGGAAACCAGAGGGGTTAAGGCTCGTGAGGAGCGCGTGTGA 300 Query 300 GGAGTGGGGTTTCTTCCAAATGGTGAACCATGGTGTGACCCACTCGTTGATGGAGAGAGT 359 |||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||| || Sbjct 301 GGAGTGGGGTTTTTTCCAAATGGTGAACCATGGTGTGAACCACTCGCTGATGGAGAGCGT 360 Query 360 GAGAGGAGCGTGGCGAGAGTTCTTCGAGCTACCGCTAGAGGAGAAACGGAAGTATGCAAA 419 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 361 GAGAGGAGCGTGGCGAGAGTTCTTCGAGCTACCGCTAGACGAGAAACGGAAGTATGCAAA 420 Query 420 CTCACCGGACACGTACGAGGGATATGGAAGCCGCCTTGGGGTTGTGAAAGATGCTAAATT 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CTCACCGGACACGTACGAGGGATATGGAAGCCGCCTTGGGGTTGTGAAAGATGCTAAATT 480 Query 480 AGATTGGAGTGATTATTTCTTCCTCAATTACTTGCCTTCTTCCATAAGAAACCCTTCCAA 539 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 481 AGATTGGAGTGATTATTTCTTCCTCAATTACTTGCCTTCTTCCATAAGAAGCCCCTCCAA 540 Query 540 GTGGCCATCTCAGCCTCCTAAGATCAGAGAATTGATCGAAAAGTACGGAGAAGAAGTGAG 599 |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 541 GTGGCCATCTCAGCCTCCTAAGATCAGAGAATTGATTGAAGAGTACGGAGAAGAAGTGAA 600 Query 600 AAAACTGTGCGAAAGGCTAACAGAGACGTTGTCAGAGAGTTTAGGTTTAAAACCAAACAA 659 |||||||||||| ||||| || ||||| ||||||||||||||||||||| |||||||| | Sbjct 601 AAAACTGTGCGAGAGGCTGACGGAGACATTGTCAGAGAGTTTAGGTTTAGAACCAAACCA 660 Query 660 GCTCATGCAGGCTTTAGGAGGAGGCGACAAAGTCGGAGCTTCTCTGAGGACAAACTTCTA 719 |||||| ||||||||||||||| |||||||||||||||||||| |||||||||| ||| Sbjct 661 TCTCATGAAGGCTTTAGGAGGAGAAGACAAAGTCGGAGCTTCTCTCAGGACAAACTACTA 720 Query 720 CCCAAAATGCCCTCAGCCGCAGCTCACTTTAGGTCTCTCTTCTCATTCTGACCCTGGAGG 779 |||||||||||||||||| || |||||| ||||||| ||||| |||||||||||||| || Sbjct 721 CCCAAAATGCCCTCAGCCACATCTCACTCTAGGTCTATCTTCCCATTCTGACCCTGGTGG 780 Query 780 CATCACCATTCTTCTCCCGGACGAGAAGGTCGCTGGCCTTCAGGTCCGTCGTGGTGATGG 839 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 781 CATCACCATTCTTCTCCCGGACGAGAAGGTCGCTGGCCTCCAGGTCCGTCGTTGTGATGG 840 Query 840 CTGGGTCACCATTAAATCAGTCCCTAATGCTTTGATCGTTAACATTGGAGATCA-ACTTC 898 |||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||| | ||| Sbjct 841 CTGGATCACCGTTAAATCAGTCCCCAATGCTTTGATCGTTAACATTGGGGATCAGA-TTC 899 Query 899 AGATACTTAGCAATGGAATTTACAAAAGCGTGGAACATCAAGTGATCGTTAATTCCGGTA 958 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 900 AGATACTTAGCAATGGAATTTACAAAAGTGTGGAGCATCAAGTGATCGTTAATTCCGGTA 959 Query 959 TGGAACGAGTCTCTTTGGCATTCTTCTATAACCCGAGAAGTGATATCCCGGTTGGACCAA 1018 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 960 TGGAACGAGTCTCTTTGGCATTCTTCTATAACCCGAGAAGTGATATCCCGATTGGACCAA 1019 Query 1019 TCGAAGAACTAGTAACTGCAAACCGACCTGCTCTTTATAAACCAATCAGGTTCGACGAGT 1078 |||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||| Sbjct 1020 TCGAAGAACTAGTAACAGAAAACCGACCTGCTCTTTATAAACCGATCAGGTTCGACGAGT 1079 Query 1079 ACCGTTCTCTGATAAGGCAAAAGGGTCCTTGTGGAAAAAACCAAGTCGACTCACTGTTAT 1138 |||||||||||||| |||||||||||||||||||||||||||| || || |||||||||| Sbjct 1080 ACCGTTCTCTGATACGGCAAAAGGGTCCTTGTGGAAAAAACCAGGTTGATTCACTGTTAT 1139 Query 1139 TAACTAGATAATAATTGATAAACATTCCAAGTATTATCTGTTATTCCTATGTCCTTGATA 1198 ||| ||||| |||||||||| ||||||||||||| |||| |||||||||||||||||||| Sbjct 1140 TAAGTAGATGATAATTGATACACATTCCAAGTATAATCTCTTATTCCTATGTCCTTGATA 1199 Query 1199 TAGTCGTTACTAAATAATATGTAAACCGTATCTT--CACTTTTTCTTATTATATTGCTGC 1256 |||| ||||||||||||||||||||||||||||| |||| | | | || |||||||||| Sbjct 1200 TAGTTGTTACTAAATAATATGTAAACCGTATCTTTACACTATATAT-AT-ATATTGCTGC 1257 Query 1257 TCTCTCTTGAGGTTTGATATTGTTAATTTCACATAGT-TTAGTTGTAGAATTTGCCATTA 1315 |||||| |||||||||||| ||||||||||||| | ||||||||||||||| |||||| Sbjct 1258 TCTCTCCTGAGGTTTGATAATGTTAATTTCACAAAAACTTAGTTGTAGAATTTACCATTA 1317 Query 1316 ATCCAATGAAATTATGGTTGGC 1337 ||| ||||||||||||||||| Sbjct 1318 GTCCCATGAAATTATGGTTGGC 1339 > Ahg497538 jgi|Araly1|497538|fgenesh2_kg.811__1__AT2G38240.1 Length=1221 Score = 1899 bits (1028), Expect = 0.0 Identities = 1158/1222 (95%), Gaps = 4/1222 (0%) Strand=Plus/Plus Query 1 ACCATCTACAACTTTCATTCTTCCACTACATTTCTCTCCTTGAGTATCTTCTTATCC-TA 59 |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1 ACCATCTACAACATTCATTCTTCCACTACATTTCTCTCCTTGAGTATCTTCATATCCTTT 60 Query 60 TTTTCCAAATTCCAAAACAATTCACAAAATGGCTACATGCTGGCCTGAGCCGATTGTTTC 119 ||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 61 TTTTCTAACTTCCAAAACAATTCACAAAATGGCTACATGCTGGCCTGAGCCAATTGTTTC 120 Query 120 CGTGCAATCCTTGTCCCAAACCGGTGTACCAACTGTACCAAACCGCTATGTGAAGCCGGC 179 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 121 CGTGCAATCCTTGTCCCAAACCGGTGTACCAACTGTACCAAACCGCTATGTAAAGCCGGC 180 Query 180 TCATCAGAGACCGGTCTTTAACACCACCCAATCCGATGCTGGGATAGAAATCCCTGTTCT 239 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| Sbjct 181 TCATCAGAGACCGGTCTTTAACACCACCCAATCCGATGCTGAGATGGAAATCCCCGTTCT 240 Query 240 AGACATGAACGACGTTTGGGGGAAACCAGAGGGGCTAAGGCTCGTGAGGAGCGCGTGTGA 299 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 241 AGACATGGACGACGTTTGGGGGAAACCAGAGGGGTTAAGGCTCGTGAGGAGCGCGTGTGA 300 Query 300 GGAGTGGGGTTTCTTCCAAATGGTGAACCATGGTGTGACCCACTCGTTGATGGAGAGAGT 359 |||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||| || Sbjct 301 GGAGTGGGGTTTTTTCCAAATGGTGAACCATGGTGTGAACCACTCGCTGATGGAGAGCGT 360 Query 360 GAGAGGAGCGTGGCGAGAGTTCTTCGAGCTACCGCTAGAGGAGAAACGGAAGTATGCAAA 419 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 361 GAGAGGAGCGTGGCGAGAGTTCTTCGAGCTACCGCTAGACGAGAAACGGAAGTATGCAAA 420 Query 420 CTCACCGGACACGTACGAGGGATATGGAAGCCGCCTTGGGGTTGTGAAAGATGCTAAATT 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CTCACCGGACACGTACGAGGGATATGGAAGCCGCCTTGGGGTTGTGAAAGATGCTAAATT 480 Query 480 AGATTGGAGTGATTATTTCTTCCTCAATTACTTGCCTTCTTCCATAAGAAACCCTTCCAA 539 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 481 AGATTGGAGTGATTATTTCTTCCTCAATTACTTGCCTTCTTCCATAAGAAGCCCCTCCAA 540 Query 540 GTGGCCATCTCAGCCTCCTAAGATCAGAGAATTGATCGAAAAGTACGGAGAAGAAGTGAG 599 |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 541 GTGGCCATCTCAGCCTCCTAAGATCAGAGAATTGATTGAAGAGTACGGAGAAGAAGTGAA 600 Query 600 AAAACTGTGCGAAAGGCTAACAGAGACGTTGTCAGAGAGTTTAGGTTTAAAACCAAACAA 659 |||||||||||| ||||| || ||||| ||||||||||||||||||||| |||||||| | Sbjct 601 AAAACTGTGCGAGAGGCTGACGGAGACATTGTCAGAGAGTTTAGGTTTAGAACCAAACCA 660 Query 660 GCTCATGCAGGCTTTAGGAGGAGGCGACAAAGTCGGAGCTTCTCTGAGGACAAACTTCTA 719 |||||| ||||||||||||||| |||||||||||||||||||| |||||||||| ||| Sbjct 661 TCTCATGAAGGCTTTAGGAGGAGAAGACAAAGTCGGAGCTTCTCTCAGGACAAACTACTA 720 Query 720 CCCAAAATGCCCTCAGCCGCAGCTCACTTTAGGTCTCTCTTCTCATTCTGACCCTGGAGG 779 |||||||||||||||||| || |||||| ||||||| ||||| |||||||||||||| || Sbjct 721 CCCAAAATGCCCTCAGCCACATCTCACTCTAGGTCTATCTTCCCATTCTGACCCTGGTGG 780 Query 780 CATCACCATTCTTCTCCCGGACGAGAAGGTCGCTGGCCTTCAGGTCCGTCGTGGTGATGG 839 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 781 CATCACCATTCTCCTCCCGGACGAGAAGGTCGCTGGCCTCCAGGTCCGTCGTGGTGATGG 840 Query 840 CTGGGTCACCATTAAATCAGTCCCTAATGCTTTGATCGTTAACATTGGAGATCA-ACTTC 898 |||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||| | ||| Sbjct 841 CTGGATCACCGTTAAATCAGTCCCCAATGCTTTGATCGTTAACATTGGGGATCAGA-TTC 899 Query 899 AGATACTTAGCAATGGAATTTACAAAAGCGTGGAACATCAAGTGATCGTTAATTCCGGTA 958 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 900 AGATACTTAGCAATGGAATTTACAAAAGTGTGGAGCATCAAGTGATCGTTAATTCCGGTA 959 Query 959 TGGAACGAGTCTCTTTGGCATTCTTCTATAACCCGAGAAGTGATATCCCGGTTGGACCAA 1018 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 960 TGGAACGAGTCTCTTTGGCATTCTTCTATAACCCGAGAAGTGATATCCCGATTGGACCAA 1019 Query 1019 TCGAAGAACTAGTAACTGCAAACCGACCTGCTCTTTATAAACCAATCAGGTTCGACGAGT 1078 |||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||| Sbjct 1020 TCGAAGAACTAGTAACAGAAAACCGACCTGCTCTTTATAAACCGATCAGGTTCGACGAGT 1079 Query 1079 ACCGTTCTCTGATAAGGCAAAAGGGTCCTTGTGGAAAAAACCAAGTCGACTCACTGTTAT 1138 |||||||||||||| |||||||||||||||||||||||||||| || || |||||||||| Sbjct 1080 ACCGTTCTCTGATACGGCAAAAGGGTCCTTGTGGAAAAAACCAGGTTGATTCACTGTTAT 1139 Query 1139 TAACTAGATAATAATTGATAAACATTCCAAGTAT-TATCTGTTATTCCTATGTCCTTGAT 1197 ||| ||||| |||||||||| ||||||||||||| ||||| ||||||||||||||||||| Sbjct 1140 TAAGTAGATGATAATTGATACACATTCCAAGTATATATCTCTTATTCCTATGTCCTTGAT 1199 Query 1198 ATAGTCGTTACTAAATAATATG 1219 |||||||||||||||||||||| Sbjct 1200 ATAGTCGTTACTAAATAATATG 1221 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50017267104 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5