BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38250.1
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901732 jgi|Araly1|901732|Al_scaffold_0004_2382 1458 0.0
> Ahg901732 jgi|Araly1|901732|Al_scaffold_0004_2382
Length=876
Score = 1458 bits (789), Expect = 0.0
Identities = 848/876 (97%), Gaps = 6/876 (1%)
Strand=Plus/Plus
Query 28 ATGGATGGACATCAGCATCATCACCTTCACCAGCTTCAATATCTCAACAAGCATCATCTT 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGGACATCAGCATCATCACCTTCACCAGCTTCAATATCTCAACAAGCATCATCTT 60
Query 88 CAT-A--CTCAATCGCAAACGCCGGAAATAGCCTCTCCGGTAGCTGTTGGGGATAGGTTT 144
||| | ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 61 CATCATCCTCAATCGCAAACGCCGGAAATAGCGTCTCCGGTAGCGGTTGGGGATAGATTT 120
Query 145 CCACAGTGGAGCGTCGAAGAGACAAAAGAGTTGATAGGGATAAGAGGAGAGCTAGATCAA 204
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCACAGTGGAGCGTTGAAGAGACAAAAGAGTTGATAGGGATAAGAGGAGAGCTAGATCAG 180
Query 205 ACTTTCATGGAGACAAAACGGAACAAGCTTCTTTGGGAAGTTATCTCTAACAAGATGAGA 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTTTCATGGAGACAAAACGGAACAAGCTTCTTTGGGAAGTTATCTCTAACAAGATGAGA 240
Query 265 GACAAAAGCTTTCCTCGTAGCCCTGAACAGTGCAAGTGCAAGTGGAAGAACCTCGTCACT 324
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GACAAAAGCTTTCCTCGTAGCCCTGAACAGTGCAAATGCAAGTGGAAGAACCTCGTCACT 300
Query 325 CGTTTTAAGGGATGTGAGACAATGGAGGCAGAGACAGCGAGACAACAGTTCCCTTTTTAT 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGTTTTAAGGGATGTGAGACAATGGAGGCAGAGACAGCGAGACAACAGTTCCCTTTTTAT 360
Query 385 GATGATATGCAAAATATATTTACCACTAGAATGCAGAGAATGCTATGGGCTGAATCCGAG 444
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATGATATGCAAATTATATTTACCACTAGAATGCAGAGAATGCTATGGGCTGAATCCGAG 420
Query 445 GGAGGAGGAGGGGGAACAAGCGGGGCAGCGAGAAAGAGAGAGTATTCTTCAGATGAGG-- 502
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 421 GGAGGAGGAGGGGGAACAAGCGGGACAGCGAGAAAGAGAGAGTATTCTTCAGAAGAGGAT 480
Query 503 -AAGAAGAGAATGTGAATGAAGAGCTAGTAGATGTCAGCAACGACCCAAAAATTCTAAAT 561
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 481 CAAGAAGAGAATGTGAATGAAGAGCTAGTAGATGTTAGCAACGACCCGAAAATCCTAAAC 540
Query 562 CCGAAAAAGAACATTGCAAAGAAGCGAAAAGGCGGTAGTAATAGTAGTAATAGCAATAAT 621
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 541 CCGAAAAAGAACATTGCAAAGAAGCGAAAAGGCGGTAGTAATAGTAGTAGTATCAATATT 600
Query 622 GGTGTAAGAGAAGTGTTGGAAGAGTTTATGAGACATCAAGTgagaatggagagcgagtgg 681
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 GGTGTTAGAGAAGTGTTGGAAGAGTTTATGAGACATCAAGTGAGGATGGAGAGCGAGTGG 660
Query 682 agagaaggatgggaggctagggagaaggaaagagcagagaaagaagaagaatggagaagg 741
||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGAGAAGTATGGGAAGCGAGGGAGAAGGAAAGAGCAGAGAAAGAAGAAGAATGGAGAAGG 720
Query 742 aagatggaggagcttgagaaggagaggTTGGCAATGGAGCGGATGTGGCGGGATAGAGAG 801
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAGATGGAGGATCTTGAGAAGGAGAGGTTGGCAATGGAGCGGATGTGGCGGGATAGAGAG 780
Query 802 GAGCAACGGCGGTCGAGGGAGGAGATGAGAGCAGAGAAGAGGGATTCACTTATCAATGCA 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GAGCAACGGCGGTCGAGGGAGGAGATGAGAGCAGAGAAGAGGGATTCACTTATCAATGCA 840
Query 862 TTGCTTGCTAAGCTTACTAGAGATGGTTCCCTCTAA 897
||||||||||||||||||||||||||||||||||||
Sbjct 841 TTGCTTGCTAAGCTTACTAGAGATGGTTCCCTCTAA 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33243183624
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5