BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38270.1
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934539 jgi|Araly1|934539|scaffold_402527.1 1365 0.0
> Ahg934539 jgi|Araly1|934539|scaffold_402527.1
Length=915
Score = 1365 bits (739), Expect = 0.0
Identities = 864/923 (94%), Gaps = 13/923 (1%)
Strand=Plus/Plus
Query 4 TTTCTCAGCTCCGACAAAAATGGCTGCAATCACCATTTCTTCCTCCTTGCACGCCTCAGC 63
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 4 TTTCTCAGCTCCGACAAAAATGGCTGCAATCACCGTTTCCTCCTCCTTGCACGCCTCAGC 63
Query 64 CTCTCCGCGTG-TTGTTCGTCCACATGTTTCTCGAAATACCCCTGTGATCACCCTCTATT 122
|||||||||| || ||| |||||| | | ||||||||||||||| |||||||
Sbjct 64 TTCTCCGCGTGTTTTTTC-TCCACA------T---ATTACCCCTGTGATCACTCTCTATT 113
Query 123 CACGCTTCACACCATCCTTCTCCTTCCCATCTCTCTCCTTCACACTCCGTGACACAGCTC 182
|||| ||||||||||||||||| || |||||||||||||||||||||||||||||| | |
Sbjct 114 CACGTTTCACACCATCCTTCTCTTTTCCATCTCTCTCCTTCACACTCCGTGACACAAC-C 172
Query 183 C-GTCTCGTCGTCGTTCCTTCTTTATCGCCTCCGCCGTCAAATCTCTAACGGAGACGGAG 241
| ||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 173 CGGTCTCGTCGTCGTCCCTTCTTAATCGCCTCCGCCGTCAAGTCTCTAACGGAGACGGAG 232
Query 242 CTGCTTCCAATCACAGAGGCTGATTCAATCCCGTCCGCTTCCGGTGTATACGCTGTATAC 301
||||||||||| |||||||||||||||||||| ||||||||||| || |||||||| |||
Sbjct 233 CTGCTTCCAATTACAGAGGCTGATTCAATCCCTTCCGCTTCCGGCGTCTACGCTGTCTAC 292
Query 302 GATAAGAGCGACGAGCTTCAGTTCGTCGGAATTTCTCGGAACATCGCTGCGAGTGTCTCT 361
||||| |||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 293 GATAAAAGCGACGAGCTTCAGTTCGTCGGAATATCTCGGAACATCGCCGCAAGTGTCTCT 352
Query 362 GCTCATCTCAAATCTGTGCCGGAGCTTTGTGGCTCCGTTAAGGTTGGAATAGTAGAAGAA 421
| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 353 ACACATCTCAAATCTGTGCCGGAGCTTTGTGGCTCCGTCAAGGTTGGTATAGTAGAAGAA 412
Query 422 CCAGATAAAGCAGTTTTAACACAAGCATGGAAATTATGGATAGAAGAACATATAAAAGTA 481
|| |||||| | ||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 413 CCGGATAAACCGGTTCTAACACAAGCATGGAAATTATGGATAGAAGAACACATAAAAGTA 472
Query 482 ACTGGAAAAGTTCCGCCGGGGAATAAGTCAGGGAACAACACATTTGTCAAACAAACTCCG 541
|| |||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 473 ACCGGAAAAGTCCCACCGGGGAATAAGTCAGGGAACAACACATTTGTCAAACAGACTCCG 532
Query 542 AGGAAGAAATCCGATATCCGTCTCACTCCAGGTCGCCATGTTGAGCTCACGGTTCCTTTG 601
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 533 AGGAAGAAATCTGATATCCGTCTCACTCCAGGTCGCCATGTCGAGCTCACGGTTCCTTTA 592
Query 602 GAGGAACTGATTGACCGTTTAGTGAAAGAGAGCAAAGTGGTAGCTTTCATAAAAGGATCA 661
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GAGGAATTGATTGACCGTTTAGTGAAAGAGAGCAAAGTGGTAGCTTTCATAAAAGGATCA 652
Query 662 AGGAGTGCTCCTCAATGTGGATTCTCACAGAGAGTTGTTGGGATTCTTGAAAGCCAAGGA 721
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 653 AGAAGTGCTCCTCAATGTGGATTCTCACAGAGAGTGGTTGGGATTCTTGAAAGCCAAGGA 712
Query 722 GTTGATTATGAAACTGTTGATGTTCTTGACGATGAGTATAATCATGGGCTAAGGGAGACG 781
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 713 GTTGATTATGAAACTGTTGATGTTCTTGACGATGAGTATAATCCCGGGCTAAGGGAGACG 772
Query 782 CTTAAGAACTACAGCAATTGGCCAACGTTTCCACAGATATTTGTGAAAGGAGAACTTGTA 841
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 773 CTTAAGAACTACAGCAATTGGCCAACGTTTCCGCAGATATTTGTGAAAGGAGAACTTGTA 832
Query 842 GGAGGATGTGATATTTTGACCTCAATGTATGAAAATGGTGAACTTGCCAATATCTTGAAC 901
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 833 GGAGGTTGTGATATTTTGACCTCAATGTATGAAAATGGTGAACTTGGCAATATCTTGAAC 892
Query 902 TAGTTTCATCCGATTTTCTTCTC 924
|||||||||||||||||||||||
Sbjct 893 TAGTTTCATCCGATTTTCTTCTC 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36750491988
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5