BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38290.1
Length=1717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934547 jgi|Araly1|934547|scaffold_402535.1 2348 0.0
> Ahg934547 jgi|Araly1|934547|scaffold_402535.1
Length=1519
Score = 2348 bits (1271), Expect = 0.0
Identities = 1431/1508 (95%), Gaps = 12/1508 (1%)
Strand=Plus/Plus
Query 90 AAAATGGCCGGAGCTTACGATCCAAGCTTGCCGGAGGTTCCTGAATGGCTCAACAAAGGA 149
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 18 AAAATGGCCGGAGCTTACGATCCAAGCTTGCCGGCGGTACCTGAATGGCTCAACAAAGGA 77
Query 150 GACAACGCGTGGCAGCTCACGGCAGCGACTCTGGTTGGTCTACAGAGTATGCCAGGTCTT 209
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 78 GACAACGCGTGGCAGCTCACGGCGGCGACTCTGGTTGGTTTACAGAGTATGCCAGGTCTT 137
Query 210 GTTATCCTCTATGCCTCCATCGTCAAGAAGAAATGGGCTGTGAATTCAGCTTTTATGGCT 269
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 138 GTTATCCTCTATGCCTCCATCGTCAAGAAGAAATGGGCTGTAAATTCAGCTTTTATGGCT 197
Query 270 CTTTACGCTTTCGCCGCCGTTCTTCTCTGTTGGGTTCTCCTCTGTTACAAAATGGCTTTT 329
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 198 CTTTACGCTTTCGCCGCCGTTCTTCTCTGTTGGGTCCTCCTCTGTTACAAAATGGCTTTT 257
Query 330 GGAGAAGAGCTTTTGCCGTTTTGGGGCAAAGGTGGTCCAGCTTTCGACCAAGGATACCTT 389
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 GGAGATGAGCTTTTGCCGTTTTGGGGCAAAGGTGGTCCAGCTTTCGACCAAGGATACCTC 317
Query 390 AAGGGACAAGCAAAGATCCCAAATAGTAATGTGGCGGCGCCGTATTTTCCGATGGCGACG 449
|||| |||||| ||||||||||| ||||||||| |||||||||||||||| |||||||||
Sbjct 318 AAGGAACAAGCCAAGATCCCAAACAGTAATGTGCCGGCGCCGTATTTTCCAATGGCGACG 377
Query 450 TTGGTGTATTTTCAGTTCACATTCGCGGCGATAACGACGATACTT-GTGGCGGGATCTGT 508
|||||||||||||||||||| ||||||||||||||||||||| || ||||||||||| ||
Sbjct 378 TTGGTGTATTTTCAGTTCACGTTCGCGGCGATAACGACGATA-TTAGTGGCGGGATCGGT 436
Query 509 GTTGGGGAGGATGAATATTAAAGCATGGATGGCTTTTGTGCCATTGTGGTTGATCTTTAG 568
|||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||
Sbjct 437 GTTGGGGAGGATGAATATTAAAGCTTGGATGGCGTTTGTGCCATTGTGGCTGATCTTTAG 496
Query 569 CTACACAGTTGGAGCTTATAGTATATGGGGAGGTGGGTTTCTGTATCAGTGGGGAGTTAT 628
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 497 CTATACAGTTGGAGCTTATAGTATTTGGGGAGGTGGGTTTCTGTATCAGTGGGGAGTTAT 556
Query 629 TGATTATTCCGGCGGTTATGTTATTCATCTCTCCTCCGGTGTTGCCGGTTTCGTCGCTGC 688
|||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 557 TGATTACTCCGGCGGATATGTTATTCATCTCTCCTCCGGTGTCGCCGGATTCGTCGCCGC 616
Query 689 TTACTGGGTAGGACCAAGGCCTAAGGCTGACAGAGAGAGATTCCCACCGAACAATGTTCT 748
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 617 TTACTGGGTAGGACCAAGGCCTAAGGCTGACAGAGAAAGATTCCCACCGAACAATGTTCT 676
Query 749 -TCTAATGCTTGCTGGAGCTGGACTTTTATGGATGGGATGGTCCGGTTTTAACGGTGGTG 807
| |||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 677 AT-TAATGCTTGCCGGAGCTGGGCTTCTATGGATGGGATGGTCCGGATTTAACGGTGGTG 735
Query 808 CTCCTTACGCGGCCAACTTAACCTCCTCTATCGCCGTGTTAAACACCAACCTCTCGGCCG 867
|||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||
Sbjct 736 CTCCTTACGCCGCCAACTTAACCTCCTCTATCGCGGTGCTAAACACCAACCTCTCAGCCG 795
Query 868 CCACAAGCCTCCTTGTATGGACTACACTTGATGTCATCTTCTTTGGCAAACCTTCTGTCA 927
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 796 CCACAAGCCTCCTTGTATGGACCACACTTGATGTCATCTTCTTTGGCAAACCTTCTGTCA 855
Query 928 TCGGAGCAATTCAAGGCATGGTTACTGGCTTAGCCGGCGTCACTCCCGGAGCAGGTTTGA 987
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 856 TCGGAGCAATTCAAGGCATGGTTACTGGCCTAGCCGGCGTCACTCCCGGAGCAGGGTTGA 915
Query 988 TCCAAACATGGGCAGCTATAATAATTGGAGTAGTCTCAGGAACAGCTCCATGGGCCTCTA 1047
||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||
Sbjct 916 TCCAAACATGGGCTGCTATAATAGTTGGAGTAGTCTCAGGAACAGTTCCATGGGCTTCTA 975
Query 1048 TGATGATCATTCACAAGAAATCCGCTCTCCTTCAAAAGGTGGATGATACATTAGCGGTGT 1107
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 976 TGATGATCCTTCACAAGAAATCTGCTCTCCTTCAAAAGGTGGATGATACATTAGCGGTGT 1035
Query 1108 TTTACACACACGCCGTGGCTGGTTTACTTGGTGGAATAATGACAGGGTTGTTTGCACACC 1167
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 1036 TTTACACACACGCCGTGGCCGGTTTACTTGGTGGAATAATGACAGGTTTGTTTGCACATC 1095
Query 1168 CTGATCTCTGCGTTTTGGTACTTCCTCTCCCAGCGACCAGA-GGAGCTTTCTACGGTGGC 1226
||||||||||||| ||| ||||||||||||||| ||||| | |||||||||||||| ||
Sbjct 1096 CTGATCTCTGCGTCTTGATACTTCCTCTCCCAGAGACCA-ATGGAGCTTTCTACGGCCGC 1154
Query 1227 AATGGCGGCAAACAGCTTTTGAAACAGTTGGCTGGAGCTGCCTTCATTGCCGTCTGGAAT 1286
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1155 AATGGCGGCAAACAGCTTTTGAAACAGTTGGCAGGAGCTGCCTTCATTGCCGTCTGGAAT 1214
Query 1287 GTGGTGTCGACTACTATCATTCTACTCGCTATTAGGGTGTTCATACCATTGAGAATGGCT 1346
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1215 GTGGTGTCAACGACTATCATACTACTCGCTATTAGGGTGTTCATACCATTGAGAATGGCT 1274
Query 1347 GAGGAAGAGCTCGGGATTGGAGACGACGCAGCACATGGGGAAGAAGCTTATGCTCTTTGG 1406
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1275 GAGGAAGAGCTCGGGATTGGAGACGACGCTGCACATGGGGAAGAAGCTTATGCTCTTTGG 1334
Query 1407 GGAGATGGAGAGAAGTTTGATGCTACAAGGCATGTGCAACAGTTTGAGAGAGATCAAGAA 1466
|| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1335 GGTGATGGAGAGAAATTTGATGCTACAAGGCATGTGCAACAG-TTGAGAGAGATCAAGAA 1393
Query 1467 GCTGCTCATCCTTCTTATGTTCATGGTGCTAGAGGTGTCACCATTGTTCTATGAtttttc 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 GCTGCTCATCCTTCTTATGTTCATGGTGCTAGAGGTGTCACCATTGTTCTATGATTTTTC 1453
Query 1527 ttcttctt-tttcttatttattttttGTGT--ATTGATTTCCTTATGACATTAGAGATGT 1583
|| ||||| ||| || | ||||||||||| |||| ||||||| ||||||||||||| |
Sbjct 1454 TTATTCTTCTTT-TTGCT-ATTTTTTGTGTGTATTGTTTTCCTTGTGACATTAGAGATAT 1511
Query 1584 GAATGAGT 1591
| ||||||
Sbjct 1512 GCATGAGT 1519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64410604295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5