BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38300.1
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482841 jgi|Araly1|482841|fgenesh2_kg.4__1901__AT2G38300.1 1932 0.0
> Ahg482841 jgi|Araly1|482841|fgenesh2_kg.4__1901__AT2G38300.1
Length=1486
Score = 1932 bits (1046), Expect = 0.0
Identities = 1177/1238 (95%), Gaps = 18/1238 (1%)
Strand=Plus/Plus
Query 303 CAGAAGTAATAATGATTCCAAGTATggagggaggcgggaagactaacagagaagaagagg 362
||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 255 CAGAAGTAAAAATGATTCCAAGTATGGAGGGAGGCGAGAAGACTAACAGAGAAGACGAGG 314
Query 363 aggaggaagaggaagaagaagaagaaggtgaagagagTAAGGTTTCAAGCAATAGTACAG 422
|||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 AGGA-G--GCGGAGGAAGAAGAAGAAGGTGAAGAGAGTAAGGTTTCAAGCAATAGTACAG 371
Query 423 TGGAAGAGAGCGACAAGAAGACTAAGGTTAGGCCTTATGTGAGATCTAAAGTCCCTCGAC 482
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 372 TGGAAGAGAGCGATAAGAAGACGAAGGTTAGGCCTTATGTGAGATCTAAAGTCCCTCGAC 431
Query 483 TCCGGTGGACTCCTGATCTTCATCTTCGCTTTGTCCGCGCCGTTGAGAGGCTTGGAGGTC 542
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 432 TACGGTGGACTCCTGATCTTCATCTTCGCTTTGTCCGCGCGGTTGAGAGGCTTGGAGGTC 491
Query 543 AAGAAAGAGCAACTCCAAAGTTGGTTCGTCAGATGATGAACATCAAAGGGCTTAGTATTG 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 AAGAAAGAGCAACTCCAAAGTTGGTTCGTCAGATGATGAACATCAAAGGGCTTAGTATTG 551
Query 603 CTCATGTCAAGAGCCATCTACAGATGTACAGAAGCAAGAAGATAGATGATCAAGGTCAAG 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 CTCATGTCAAGAGCCATCTACAGATGTACAGAAGCAAGAAGATAGATGATCAAGGTCAAG 611
Query 663 CTATAGCTGGTCACAAACATCTCTTCGAGACTTCCACAGATCGAAATATTTATAAACTAA 722
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 CCATAGCTGATCACAAACATCTCTTCGAGACTTCCACAGATCGAAATATTTATAAACTAA 671
Query 723 GTCAGCTACCGATGTTCCGAGGCTATAATCATAACCATGATTCTCCATTCAGATATGGAA 782
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 672 GTCAGCTACCGATGTTCCGAGGCTATAATCGTAACTATGATTCTCCATTCAGATATGGAA 731
Query 783 GTAAAATTTCAAATGCTTCTTTGTGGAACTCTAGCTCTCAAGGAACAGAAAGGAGTTTGA 842
||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 732 GTAAATTTTCAAATGCTTCTTTGTGGAACTCTAGCTCTCACGGAACAGACCGGAGTTTGA 791
Query 843 TAGACCAAATTAGGCCCGGTTTAATCCGCAACGCGTCGGTTAGCAATAACATCCGTGGTA 902
|||| ||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 792 TAGAACAAATTAGGCCCGGTTTAATCCGCAGCTCATCGGTTAGCAATAACATCCGTGGTA 851
Query 903 GTGATTATTGGACTAACAACAAGTCTTTCCAA-AACATCTACTCTTCTTCAATTTCTAAT 961
|||| |||||||||||||||| ||||||| || || ||||||||||||||||||||||||
Sbjct 852 GTGAATATTGGACTAACAACAGGTCTTTC-AAGAATATCTACTCTTCTTCAATTTCTAAT 910
Query 962 CACTTTCCGAAACTACGACACGATCATCACGAACGGACCAATTCAGTCACATTCAACAGC 1021
||||| ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 911 CACTTACCGAAACTAAGACACGATCATCAAGAACGGACCAATCCAGTCACATTCAACAGC 970
Query 1022 ATTCAAGGACACTCAAGAACTTTTCAAAAGTTCCATAACGGTGTTGAGGAGAACACTAAT 1081
|| |||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||
Sbjct 971 ATGCAAGGACACTCAAGAACTTTTCAAAAGTTCCATATCGGTGTTGAAGAGAGCACTAAT 1030
Query 1082 CATTCTTATTGTAGCAAGACAA-ATGGCAAAAGAGACGCAAGTAGGAGCAT---T---GA 1134
|||||||||| ||||||||||| | ||||||||| ||||||||| |||||| | ||
Sbjct 1031 CATTCTTATTTTAGCAAGACAACA-GGCAAAAGAAACGCAAGTACGAGCATCGATCTTGA 1089
Query 1135 TCTTGATCTATCTCTTAAGCTAAGACAACCGGAGAAGACAATTTTGGAAGAGACAGAAAC 1194
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1090 TCTTGATCTATCTCTTAAGCTACGACAACCCGAGAAGACAATTTTGGAAGAGACAGAAAC 1149
Query 1195 AGCAGCAACAACAACGGATCAAACGTTGTCCTTGTCGCTATGTCCAGGGTCGTCTTCGTG 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 AGCAGCAACAACAACGGATCAAACGTTGTCCTTGTCGCTATGTCCAGGGTCGTCTTCGTG 1209
Query 1255 GAAAAAGAGCCGACTGAT---GAAAGATGAAGAGGATCGGACGGTTAAGATTGGTCAGG- 1310
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1210 GAAAAAGAGCCGACTGATAAAGAAAGGTGAAGAGGATCGGACGGTTAAGATTGGTCAGGC 1269
Query 1311 AGAGTACTCTGGATCTGACTCTATGAATTATATTTAAGAATGAGACAAATTCTAAGTGAG 1370
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 A-AGTACTCTCGATCTGACTCTATGAATTATATTTAAGAATGAGACAAATTCTAAGTGAG 1328
Query 1371 ATCTTGAGGTACTTACCGATATCTTAATATTCAGTGTCGTTGTTGTTTATCATTAATCAT 1430
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1329 ATCTTGAGGTACTTACTGATATCTTAATATTCAGTGTCGTTGTTGTTTATCATTAATTAT 1388
Query 1431 GTATTTTCTTTATTATTAGAAAGGAAACAAAAATGTTTGATTATATTAACGGTCTTGAGT 1490
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 GTATTTTCTTAATTATTAGAAAGGAAACAAAAATGTTTGATTATATTAACGGTCTTGAGT 1448
Query 1491 TTGTTTGATACCGCCAATTTGTATCATCACATATATAA 1528
||||||||||||||||| ||||||||||||||||||||
Sbjct 1449 TTGTTTGATACCGCCAACTTGTATCATCACATATATAA 1486
Score = 327 bits (177), Expect = 1e-88
Identities = 235/260 (90%), Gaps = 15/260 (6%)
Strand=Plus/Plus
Query 2 AAATCAATTAGCTGTGAACAGAAAAGAAAACTTTTTAACATATGCAACAAGATTTAGGTG 61
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 AAATCAATTAGCTGTGAACAGAAAAGAACACTTTTTAACATATGCAACAAGATTTAGGTG 60
Query 62 AGGGTTTGTCTACATGTTCCGGGAagagagagagagagaATCAGAAGTGTATCTTGATCT 121
|||||||||||||||| ||| || || ||||||||||||||| ||||||||||||||||
Sbjct 61 AGGGTTTGTCTACATGCTCC-GG--GA-AGAGAGAGAGAATCATAAGTGTATCTTGATCT 116
Query 122 AGGG--T-TCA-C-AGAC--A-AAATCTCCATGCTTTGAACTAAGCAGAATTCATCTGGT 173
|||| | ||| | | || | ||||||||||||||||||||||||||||||||||| ||
Sbjct 117 AGGGTTTCTCATCGACACAGACAAATCTCCATGCTTTGAACTAAGCAGAATTCATCTTGT 176
Query 174 CTTTTATCTCTTTCATATCAAACCAAAGGATT-GATCTATCCA-TATCGTCCAAAACCTA 231
|||||||||||||||| ||||||||||||||| |||||||||| | || ||||||||||
Sbjct 177 CTTTTATCTCTTTCATGTCAAACCAAAGGATTTGATCTATCCACT-TCTTCCAAAACCTT 235
Query 232 TATCTAGCTAAGCCTAGAAC 251
|||||||||| ||| |||||
Sbjct 236 TATCTAGCTACGCCAAGAAC 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58087623625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5