BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G38304.1 Length=192 Score E Sequences producing significant alignments: (Bits) Value Ahg934549 jgi|Araly1|934549|scaffold_402537.1 326 4e-89 > Ahg934549 jgi|Araly1|934549|scaffold_402537.1 Length=250 Score = 326 bits (176), Expect = 4e-89 Identities = 180/182 (99%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 1 ATGTGGACGTGTAGAAGCAGAAGGAAGATGGAAATTAAGTGTAAAGAAGAAAGGAGTGGT 60 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 21 ATGTGGACGTGTAGAAGCAGAAGAAAGATGGAAATTAAGTGTAAAGAAGAAAGGAGTGGT 80 Query 61 GACGAGAAGCTTGTGAAGGATCGATGGCAAGTCTCTTTACACGTGGGGGGAATGACAAAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 GACGAGAAGCTTGTGAAGGATCGATGGCAAGTCTCTTTACACGTGGGGGGAATGACAAAG 140 Query 121 TTCTTCTTTTTTCTACTTCATCAAAGCTTACAATTTCCTCTCCTCAACAACtttttttgt 180 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 TTCTTCTTTTTTCAACTTCATCAAAGCTTACAATTTCCTCTCCTCAACAACTTTTTTTGT 200 Query 181 tt 182 || Sbjct 201 TT 202 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 6453816109 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5