BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G38304.1

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg934549 jgi|Araly1|934549|scaffold_402537.1                        326    4e-89


> Ahg934549 jgi|Araly1|934549|scaffold_402537.1
Length=250

 Score =  326 bits (176),  Expect = 4e-89
 Identities = 180/182 (99%), Gaps = 0/182 (0%)
 Strand=Plus/Plus

Query  1    ATGTGGACGTGTAGAAGCAGAAGGAAGATGGAAATTAAGTGTAAAGAAGAAAGGAGTGGT  60
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  21   ATGTGGACGTGTAGAAGCAGAAGAAAGATGGAAATTAAGTGTAAAGAAGAAAGGAGTGGT  80

Query  61   GACGAGAAGCTTGTGAAGGATCGATGGCAAGTCTCTTTACACGTGGGGGGAATGACAAAG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  81   GACGAGAAGCTTGTGAAGGATCGATGGCAAGTCTCTTTACACGTGGGGGGAATGACAAAG  140

Query  121  TTCTTCTTTTTTCTACTTCATCAAAGCTTACAATTTCCTCTCCTCAACAACtttttttgt  180
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  141  TTCTTCTTTTTTCAACTTCATCAAAGCTTACAATTTCCTCTCCTCAACAACTTTTTTTGT  200

Query  181  tt  182
            ||
Sbjct  201  TT  202



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6453816109


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5