BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38310.1
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934564 jgi|Araly1|934564|scaffold_402552.1 1116 0.0
Ahg923593 jgi|Araly1|923593|scaffold_104874.1 337 1e-91
Ahg928572 jgi|Araly1|928572|scaffold_301029.1 331 6e-90
Ahg940891 jgi|Araly1|940891|scaffold_601435.1 322 4e-87
> Ahg934564 jgi|Araly1|934564|scaffold_402552.1
Length=667
Score = 1116 bits (604), Expect = 0.0
Identities = 648/669 (97%), Gaps = 3/669 (0%)
Strand=Plus/Plus
Query 163 AAGAAGACACCATTACTCAGATCAACATGCTTGCCGTTCACCGTCCTTCTTCCGCCGTAT 222
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1 AAGAAGACACCATTACTCAGATCAACATGCTCGCCGTTCACCGGCCTTCTTCCGCCGTAT 60
Query 223 CAGACGGAGATTCCGTTCAGATTCCGATGATGATCGCGTCGTTTCAAAAACGTTTTCCTT 282
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTGACGGAGATTCCGTCCAGATTCCGATGATGATCGCGTCGTTTCAAAAACGTTTTCCTT 120
Query 283 CTCTCTCACGCGACTCCACGGCCGCTCGTTTTCACACACACGAGGTTGGTCCTAATCAGT 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 CTCTCTCACGCGACTCCACGGCCGCTCGTTTTCACACACACGAGGTTGGTCCTAACCAGT 180
Query 343 GTTGCTCCGCCGTTATTCAAGAGATCTCCGCTCCAATCTCCACCGTTTGGTCCGTCGTAC 402
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 181 GTTGCTCCGCCGTTATTCAAGAGATCTCCGCTCCAATATCCACCGTTTGGTCCGTCGTCC 240
Query 403 GCCGCTTTGATAACCCACAAGCTTACAAACACTTTCTCAAAAGCTGTAGCGTCATCGGCG 462
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 GCCGCTTTGATAACCCACAAGCTTACAAACACTTTCTCAAAAGCTGCAGCGTCATCGGCG 300
Query 463 GAGACGGCGATAACGTTGGTAGCCTCCGTCAAGTCCACGTCGTCTCTGGTCTCCCCGCCG 522
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 301 GAGACGGCGATAACGTTGGTAGCCTCCGTCAAGTCCACGTCGTCTCTGGCCTCCCTGCCG 360
Query 523 CTAGCTCCACCGAGAGACTCGATATCCTCGACGACGAACGCCACGTCATCAGCTTCAGCG 582
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 361 CTAGCTCCACCGAGAGACTTGATATCCTCGACGACGAACGCCACGTCATCAGTTTCAGCG 420
Query 583 TTGTTGGTGGTGACCACCGGCTCTCTAACTACCGATCCGTAACGACCCTTCACCCTTCTC 642
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 421 TTGTTGGTGGTGACCACCGGCTTTCTAACTACCGATCCGTCACGACCCTTCACCCTTCTC 480
Query 643 CGATCTCCGGGACCGTCGTTGTCGAGTCTTACGTCGTTGATGTTCCTCCAGGCAACACAA 702
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 481 CGATCTCCGGGACCGTCGTTGTGGAGTCTTACGTCGTTGATGTTCCTCCAGGGAACACAA 540
Query 703 AGGAAGAGACTTGTGACTTCGTTGACGTTATCGTACGATGCAATCTTCAATCTCTTGCGA 762
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGGAAGAGACTTGTGACTTTGTTGACGTTATCGTACGATGCAATCTTCAATCTCTTGCGA 600
Query 763 AAATAGCCGAGAATACTGCGGCTGAGAGCAAGAAGAAGATGTCTCTGTGATGAGTCTTTG 822
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 601 AAATAGCCGAGAATACTGCGGCGGAGAGCAAGAAGA---TGTCTCTGTGATGAGTCTTTG 657
Query 823 TCGTTGTCG 831
|||||||||
Sbjct 658 TCGTTGTCG 666
> Ahg923593 jgi|Araly1|923593|scaffold_104874.1
Length=322
Score = 337 bits (182), Expect = 1e-91
Identities = 210/224 (94%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 236 CGTTCAGATTCCGATGATGATCGCGTCGTTTCAAAAACGTTTTCCTTCTCTCTCACGCGA 295
|||| |||||||||||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 5 CGTTTAGATTCCGATGATGATCGTGTCGTTCCAAAAACTTTTTCCTTCTCTCTCACGCGA 64
Query 296 CTCCACGGCCGCTCGTTTTCACACACACGAGGTTGGTCCTAATCAGTGTTGCTCCGCCGT 355
||||||| ||||||||||||||||||||||||||| |||||| ||||||||||| || ||
Sbjct 65 CTCCACGACCGCTCGTTTTCACACACACGAGGTTGATCCTAACCAGTGTTGCTCTGCTGT 124
Query 356 TATTCAAGAGATCTCCGCTCCAATCTCCACCGTTTGGTCCGTCGTACGCCGCTTTGATAA 415
|||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 125 TATTCAAGAGATCTCCGCTCCAATATCCACCGTTTGGTCCGTCGTCCACCGCTTTGATAA 184
Query 416 CCCACAAGCTTACAAACACTTTCTCAAAAGCTGTAGCGTCATCG 459
|||||||||||||||||||||||||||||| || ||||||||||
Sbjct 185 CCCACAAGCTTACAAACACTTTCTCAAAAGTTGCAGCGTCATCG 228
Score = 137 bits (74), Expect = 1e-31
Identities = 90/97 (93%), Gaps = 3/97 (3%)
Strand=Plus/Plus
Query 852 CGTCGTTTTCTAGATTTTTAGCCGTCGTGTGATCTATG-TTTTTT-CGGCTTATGTGTGa 909
|||| |||||| ||||||||||| |||||||||||||| |||||| ||| |||||||||
Sbjct 227 CGTCATTTTCTTGATTTTTAGCCATCGTGTGATCTATGTTTTTTTCCGGTTTATGTGTG- 285
Query 910 aaaaaaaGTTACATTAGTGAATTAATCTCTCATGCAT 946
|||||||||||||||||||||||||||||||||||||
Sbjct 286 AAAAAAAGTTACATTAGTGAATTAATCTCTCATGCAT 322
> Ahg928572 jgi|Araly1|928572|scaffold_301029.1
Length=324
Score = 331 bits (179), Expect = 6e-90
Identities = 209/224 (93%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 236 CGTTCAGATTCCGATGATGATCGCGTCGTTTCAAAAACGTTTTCCTTCTCTCTCACGCGA 295
|||| |||||||||||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 7 CGTTTAGATTCCGATGATGATCGTGTCGTTCCAAAAACTTTTTCCTTCTCTCTCACGCGA 66
Query 296 CTCCACGGCCGCTCGTTTTCACACACACGAGGTTGGTCCTAATCAGTGTTGCTCCGCCGT 355
|||| || ||||||||||||||||||||||||||| |||||| ||||||||||| | ||
Sbjct 67 CTCCGCGACCGCTCGTTTTCACACACACGAGGTTGATCCTAACCAGTGTTGCTCTGTTGT 126
Query 356 TATTCAAGAGATCTCCGCTCCAATCTCCACCGTTTGGTCCGTCGTACGCCGCTTTGATAA 415
|||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 127 TATTCAAGAGATCTCCGCTCCAATATCCACCGTTTGGTCCGTCGTCCACCGCTTTGATAA 186
Query 416 CCCACAAGCTTACAAACACTTTCTCAAAAGCTGTAGCGTCATCG 459
||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 187 CCCACAAGCTTACAAACACTTTCTCAAAAGCTGCAGCGTCATCG 230
Score = 137 bits (74), Expect = 1e-31
Identities = 90/97 (93%), Gaps = 3/97 (3%)
Strand=Plus/Plus
Query 852 CGTCGTTTTCTAGATTTTTAGCCGTCGTGTGATCTATG-TTTTTT-CGGCTTATGTGTGa 909
|||| |||||| ||||||||||| |||||||||||||| |||||| ||| |||||||||
Sbjct 229 CGTCATTTTCTTGATTTTTAGCCATCGTGTGATCTATGTTTTTTTCCGGTTTATGTGTG- 287
Query 910 aaaaaaaGTTACATTAGTGAATTAATCTCTCATGCAT 946
|||||||||||||||||||||||||||||||||||||
Sbjct 288 AAAAAAAGTTACATTAGTGAATTAATCTCTCATGCAT 324
> Ahg940891 jgi|Araly1|940891|scaffold_601435.1
Length=322
Score = 322 bits (174), Expect = 4e-87
Identities = 205/220 (93%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 241 AGATTCCGATGATGATCGCGTCGTTTCAAAAACGTTTTCCTTCTCTCTCACGCGACTCCA 300
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||
Sbjct 10 AGATTCCGATGATGATCGCGTCGTTCCAAAAACTTTTTCCTTCTCTCTCACGCGACCCCA 69
Query 301 CGGCCGCTCGTTTTCACACACACGAGGTTGGTCCTAATCAGTGTTGCTCCGCCGTTATTC 360
||||||||||||||||||||||||||||| |||||| ||||||||||| || |||||||
Sbjct 70 TGGCCGCTCGTTTTCACACACACGAGGTTGATCCTAACCAGTGTTGCTCTGCTGTTATTC 129
Query 361 AAGAGATCTCCGCTCCAATCTCCACCGTTTGGTCCGTCGTAC-GCCGCTTTGATAACCCA 419
| ||||||||||||| ||| |||||||||||||| ||||| | |||||||||||||||||
Sbjct 130 ACGAGATCTCCGCTCTAATATCCACCGTTTGGTCTGTCGT-CTGCCGCTTTGATAACCCA 188
Query 420 CAAGCTTACAAACACTTTCTCAAAAGCTGTAGCGTCATCG 459
||||||||||||||||||||||||||||| ||||||||||
Sbjct 189 CAAGCTTACAAACACTTTCTCAAAAGCTGCAGCGTCATCG 228
Score = 132 bits (71), Expect = 6e-30
Identities = 89/97 (92%), Gaps = 3/97 (3%)
Strand=Plus/Plus
Query 852 CGTCGTTTTCTAGATTTTTAGCCGTCGTGTGATCTATG-TTTTTTC-GGCTTATGTGTGa 909
|||| |||||| ||||||||||| |||||||||||||| ||||||| || |||||||||
Sbjct 227 CGTCATTTTCTTGATTTTTAGCCATCGTGTGATCTATGTTTTTTTCTGGTTTATGTGTG- 285
Query 910 aaaaaaaGTTACATTAGTGAATTAATCTCTCATGCAT 946
|||||| ||||||||||||||||||||||||||||||
Sbjct 286 AAAAAATGTTACATTAGTGAATTAATCTCTCATGCAT 322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41210873277
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5