BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38320.1
Length=1538
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482843 jgi|Araly1|482843|fgenesh2_kg.4__1903__AT2G38320.1 2300 0.0
> Ahg482843 jgi|Araly1|482843|fgenesh2_kg.4__1903__AT2G38320.1
Length=1483
Score = 2300 bits (1245), Expect = 0.0
Identities = 1391/1462 (95%), Gaps = 8/1462 (1%)
Strand=Plus/Plus
Query 54 ATATAGACAGCTACAGAAAAT-TGATTGACCACCAAACAACAAAATAACTTCAAGAAGGC 112
|||||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||
Sbjct 25 ATATAGACAGCTACTG-AAATGTGATTGACCACCAAACTACAAAATAACTTCAAGAAGGC 83
Query 113 TGGAGTTAAAAGGCAAGTAAGAGAAAGACACATCAATATAACCCAAAACAAAACATCATA 172
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 84 TGGAGTTAAAAGGCAAGTCAGAGAAAGACACATCAATATAACCCAAAAC-AAACATCATA 142
Query 173 ACAGCAACAATAACAGACACATAACCAATGGCAAAGCGACAACTGTTGATGCTGGGTATT 232
||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 143 ACAACAACAATAACAAACACATAACCAATGGTAAAGCGACAACTGTTGATGCTAGGTATC 202
Query 233 AGAACTAGCTTTCATACTATCGCCGCCGTGCTTGTGGCCGGATTAATATTCACTGCCGTG 292
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 203 AGAACTAGCTTTCATACTATCGCCGCCGTGCTTGTGGCCGGATTAATAGTCACTGCCGTG 262
Query 293 TTTTTGTCCAGAAACAGTTTGCCAAAGGAAAATCCTCAAAGCCACGGTGTTA-CGGATCG 351
||| ||||| ||||| |||||| ||||||||| |||||||| || ||| || |||| |
Sbjct 263 TTTATGTCCCGAAACGGTTTGCTAAAGGAAAACCCTCAAAGAGACAGTG-TACCGGACCT 321
Query 352 CGGAGGGGACAGTGGCAGAGAATGTAATTTGTTCGAAGGGAAATGGGTATTTGATAACGT 411
| | || |||||| ||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 322 CAGCGGCGACAGTAGCAAAGAATGTAATTTGTTCGAAGGGAAATGGGTATTTGATAATGA 381
Query 412 ATCATACCCTCTTTATAAAGAAGAAGATTGCAAGTTCATGTCTGACCAGTTGGCTTGTGA 471
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 382 ATCATACCCTCTTTATAAAGAAGAAGATTGCAAGTTTATGTCTGACCAGTTGGCTTGTGA 441
Query 472 GAAGTTTGGGAGGAAAGATCTGAGTTACAAATTCTGGAGGTGGCAACCTCACACGTGTGA 531
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 442 GAAGTTTGGGAGAAAAGATTTGAGTTACAAATTCTGGAGGTGGCAACCTCACACGTGTGA 501
Query 532 TCTTCCCAGGTTTAATGGAACGAAGTTGCTGGAGAGGCTAAGAAATAAGAGGATGGTGTA 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 502 TCTTCCCAGGTTTAATGGAACGAAGTTGCTGGAGAGGCTAAGAAATAAGAGGATGGTATA 561
Query 592 CGTAGGAGACTCTCTGAACAGAGGCCAATGGGTATCAATGGTGTGTATGGTTAGTTCGGT 651
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 562 CGTAGGAGACTCTTTGAACAGAGGCCAATGGGTATCGATGGTGTGTATGGTTAGTTCGGT 621
Query 652 AATTACAAACCCAAAGGCGATGTATATGCACAACAATGGCTCTAACCTCATCACGTTCAA 711
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 622 CATTACAAACCCAAAGGCGATGTATATGCACAACAATGGCTCTAACCTCATCACCTTCAA 681
Query 712 AGCTCTCGAATACAATGCTACAATAGACTACTATTGGGCTCCTTTGCTGGTGGAATCCAA 771
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 682 AGCCCTCGAATACAATGCGACAATAGACTACTATTGGGCTCCTTTACTGGTGGAATCCAA 741
Query 772 CTCGGACGACCCGACAAACCATAGATTCCCCGATCGGATAGTTCGGATCCAATCAATAGA 831
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 742 CTCGGACGACCCGACAAACCATAGATTTCCTGATCGGATAGTTCGGATCCAATCGATAGA 801
Query 832 AAAACATGCAAGGCATTGGACGAACTCTGATATCATTGTTTTCAACTCTTACTTATGGTG 891
|||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 802 GAAACATGCGAGGCATTGGACGAACTCTAATATCATTGTTTTCAACTCTTATTTATGGTG 861
Query 892 GAGAATGCCTCATATCAAGTCACTGTGGGGATCGTTTGAGAAATTAGATGGAATATACAA 951
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 862 GAGAATGCCTCATATCAAGTCACTGTGGGGATCATTTGAGAAGTTAGATGGAATATACAA 921
Query 952 GGAAGTGGAGATGGTGAGAGTTTATGAAATGGCTTTGCAAACACTGTCTCAGTGGTTGGA 1011
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 922 GGAAGTGGAGATGGTGAGAGTTTATGAGATGGCTTTGCAAACACTGTCTCAGTGGTTGGA 981
Query 1012 GGTTCACGTTAACCCCAATATTACCAAACTTTTCTTCATGTCCATGTCTCCCACCCATGA 1071
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 982 GGTTCACGTTAACCCCAATCTTACCAAACTTTTCTTCATGTCCATGTCTCCCACCCATGA 1041
Query 1072 AAGGGCTGAAGAATGGGGAGGAATACTTAATCAGAACTGTTATGGAGAAGCTAGTCTAAT 1131
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1042 AAGGGCTGAAGAATGGGGAGGAAAACTTAATCAGAACTGTTATGGAGAAACTAGTCTAAT 1101
Query 1132 AGATAAAGAAGGATATACTGGAAGAGGGTCAGATCCAAAGATGATGAGAGTCTTAGAAAA 1191
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1102 AGATAAAGAAGGATATACTGGAAAAGGTTCAGATCCAAAGATGATGAGAGTCTTAGAAAA 1161
Query 1192 TGTGCTTGACGGGCTAAAAAATCGAGGATTAAACATGCAGATGATAAACATTACGCAACT 1251
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1162 TGTGCTTGACGGGCTAAAAAATCGAGGATTAAATATGCAGATGATAAACATTACGCAACT 1221
Query 1252 ATCAGAGTATCGAAAAGAAGGTCATCCTTCGATCTACAGAAAACAATGGGGAACAGTGAA 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 ATCAGAGTATCGAAAAGAAGGTCATCCTTCGATCTACAGAAAACAATGGGGAACAGTGAA 1281
Query 1312 GGAAAATGAAATCTCGAATCCAAGTAGTAACGCAGATTGTATACATTGGTGTTTGCCTGG 1371
|||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1282 GGAAAATGAACTCTCGAATCCAAGTAGTAATGCAGATTGCATACATTGGTGTTTGCCTGG 1341
Query 1372 AGTTCCTGATGTTTGGAATGAACTCCTTTATGCTTATATTCTTGACCATCATTCTAGTTG 1431
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1342 AGTTCCTGATGTTTGGAATGAACTCCTTTATGCTTATATTCTTGACCATCACTCTAGTTG 1401
Query 1432 AAAACTACTATTATATCTTTTGttttt-tt--ACCTATTCCACTTCAATTGTACAGTTGA 1488
||||||||||||| ||||||| ||||| || |||||||||||||||||||||||| |||
Sbjct 1402 AAAACTACTATTACATCTTTTTTTTTTCTTCTACCTATTCCACTTCAATTGTACAGCTGA 1461
Query 1489 TTTCCTTACTCTCACTTCTTTT 1510
||| |||||||||||| ||||
Sbjct 1462 TTTTATTACTCTCACTTATTTT 1483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57592450440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5