BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G38340.1 Length=896 Score E Sequences producing significant alignments: (Bits) Value Ahg482845 jgi|Araly1|482845|fgenesh2_kg.4__1905__AT2G38340.1 1090 0.0 Ahg887453 jgi|Araly1|887453|Al_scaffold_0096_7 137 1e-31 > Ahg482845 jgi|Araly1|482845|fgenesh2_kg.4__1905__AT2G38340.1 Length=840 Score = 1090 bits (590), Expect = 0.0 Identities = 738/807 (91%), Gaps = 20/807 (2%) Strand=Plus/Plus Query 73 TAATATTTTCTACAGTTTGTACGTGTTGTGTTTTTCCAATGGAAAAGGAAGATAACGGAT 132 |||| ||||||||||||||| ||||||||| | | |||||||||||||||||||||||| Sbjct 50 TAAT-TTTTCTACAGTTTGT--GTGTTGTGTGTGTACAATGGAAAAGGAAGATAACGGAT 106 Query 133 CGAAACAGAGCTCCTCTGCTTCTGTTGTATCCTCGAGAAGACGAAGAAGA-G--TGGTTG 189 ||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| Sbjct 107 CGAAACAGAGCTCCTCTGCTTCTGTTGTATCCTCGAGAAGAAGAAGAAGAAGAGTGGTTG 166 Query 190 AGCCAGTGGAAGCGACGTTACAGAGATGGGAGGAAGAAGGATTGGCGAGAGCTCGTAGGG 249 |||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||| || Sbjct 167 AGCCAGTGGAAGCGACGTTACAGAGATGGGAGGAGGAAGGGTTGGCTAAAGCTCGTAAGG 226 Query 250 TTCAAGCCAAAGGTTCGAAGAAAGGTTGTATGAGAGGAAAAGGTGGACCAGAGAATCCTG 309 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 227 TTCAAGCTAAAGGTTCGAAGAAAGGTTGTATGAGAGGAAAAGGCGGACCAGAGAATCCGG 286 Query 310 TTTGTCGGTTTAGAGGTGTTCGACAAAGGGTTTGGGGGAAATGGGTTGCTGAGATACGTG 369 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 287 TTTGTCGGTTTAGAGGTGTTCGACAGAGGGTTTGGGGGAAATGGGTTGCTGAGATACGTG 346 Query 370 AACCAGTGAGTCACCGTGGTGCAAACTCTAGTCGTAGTAAACGGCTTTGGCTTGGCACGT 429 |||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||| Sbjct 347 AACCAGTGAGCCACCGTGGTGCAAACTCGAGTCGTAGTAAACGCCTTTGGCTTGGAACGT 406 Query 430 TTGCTACTGCAGCTGAAGCTGCTTTGGCTTACGACAGAGCTGCTAGTGTCATGTACGGAC 489 | ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 407 TCGCTACTGCAGCCGAAGCCGCCTTGGCTTACGACAGAGCTGCTAGTGTCATGTACGGAC 466 Query 490 CCTATGCCAGGTTAAATTTCCCGGAAGATTTGGGTGGGGGAAGGAAGAAGGACGAGGAGG 549 |||||||| |||||||||||||||||||||||||||| | || ||||||||||||||||| Sbjct 467 CCTATGCCCGGTTAAATTTCCCGGAAGATTTGGGTGGAGAAATGAAGAAGGACGAGGAGG 526 Query 550 CGGAAAGTTCGGGAGGCTATTGGTTGGAAACTAACAAAGCCGGTAATGGCGTGATTGAAA 609 |||||| ||||||||| ||||||||||||||| ||||| | ||| ||||||||||||||| Sbjct 527 CGGAAACTTCGGGAGGATATTGGTTGGAAACTGACAAATCTGGTCATGGCGTGATTGAAA 586 Query 610 CGGAAGGTGGAAAAGACTATGTAGTCTACAATGAAGACGCTATTGAGCTTGGCCATGACA 669 || ||| | |||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 587 CGAAAGATCGAAAGGACTATGTAGTCTACAACGAAGACGCTATTGAGCTTGGCCATGACA 646 Query 670 AGACTCAGAATCCTATGACTGATAATGAAATAGTGAACCCAGCAGTGAAATCAGAGGAAG 729 ||||| |||||||||| | | | ||| | |||||| ||||||||||||||||| Sbjct 647 AGACTGAGAATCCTAT---T-A-A-TGA----G--AACCCATCAGTGAAATCAGAGGAAA 694 Query 730 GTTACAGCTATGATCGATTCAAATTGGATAACGGATTGTTGTATAATGAACCTCAAAGCT 789 |||||||| ||| |||||||||||||| || |||||| |||| |||||||||||| ||| Sbjct 695 ATTACAGCTTTGAACGATTCAAATTGGAAAATGGATTGATGTACAATGAACCTCAAGGCT 754 Query 790 CCAGTTATCACCAGGGAGGTGGATTCGATTCATATTTTGAGTATTTCAGATTCTAGCTTA 849 ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 755 CCAGTTATCACCAGGGAGGTGGATTCGATTCATATTTAGAGTTTTTCAGATTCTAGCTTA 814 Query 850 G-GATTTATGCTGCATCAATATACTAT 875 | | ||||||||||||||||||||||| Sbjct 815 GTG-TTTATGCTGCATCAATATACTAT 840 > Ahg887453 jgi|Araly1|887453|Al_scaffold_0096_7 Length=183 Score = 137 bits (74), Expect = 1e-31 Identities = 89/96 (93%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 592 GTAATGGCGTGATTGAAACGGAA-GGTGGAAAAGACTATGTAGTCTACAATGAAGACGCT 650 ||||||||||||||||||| ||| | |||||| ||||||||||||||||| || |||||| Sbjct 95 GTAATGGCGTGATTGAAAC-GAATGATGGAAAGGACTATGTAGTCTACAAGGAGGACGCT 37 Query 651 ATTGAGCTTGGCCATGACAAGACTCAGAATCCTATG 686 |||||||||||||||||||||||| ||||||||||| Sbjct 36 ATTGAGCTTGGCCATGACAAGACTGAGAATCCTATG 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33205060707 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5