BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38340.1
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482845 jgi|Araly1|482845|fgenesh2_kg.4__1905__AT2G38340.1 1090 0.0
Ahg887453 jgi|Araly1|887453|Al_scaffold_0096_7 137 1e-31
> Ahg482845 jgi|Araly1|482845|fgenesh2_kg.4__1905__AT2G38340.1
Length=840
Score = 1090 bits (590), Expect = 0.0
Identities = 738/807 (91%), Gaps = 20/807 (2%)
Strand=Plus/Plus
Query 73 TAATATTTTCTACAGTTTGTACGTGTTGTGTTTTTCCAATGGAAAAGGAAGATAACGGAT 132
|||| ||||||||||||||| ||||||||| | | ||||||||||||||||||||||||
Sbjct 50 TAAT-TTTTCTACAGTTTGT--GTGTTGTGTGTGTACAATGGAAAAGGAAGATAACGGAT 106
Query 133 CGAAACAGAGCTCCTCTGCTTCTGTTGTATCCTCGAGAAGACGAAGAAGA-G--TGGTTG 189
||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 107 CGAAACAGAGCTCCTCTGCTTCTGTTGTATCCTCGAGAAGAAGAAGAAGAAGAGTGGTTG 166
Query 190 AGCCAGTGGAAGCGACGTTACAGAGATGGGAGGAAGAAGGATTGGCGAGAGCTCGTAGGG 249
|||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||| ||
Sbjct 167 AGCCAGTGGAAGCGACGTTACAGAGATGGGAGGAGGAAGGGTTGGCTAAAGCTCGTAAGG 226
Query 250 TTCAAGCCAAAGGTTCGAAGAAAGGTTGTATGAGAGGAAAAGGTGGACCAGAGAATCCTG 309
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 227 TTCAAGCTAAAGGTTCGAAGAAAGGTTGTATGAGAGGAAAAGGCGGACCAGAGAATCCGG 286
Query 310 TTTGTCGGTTTAGAGGTGTTCGACAAAGGGTTTGGGGGAAATGGGTTGCTGAGATACGTG 369
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 287 TTTGTCGGTTTAGAGGTGTTCGACAGAGGGTTTGGGGGAAATGGGTTGCTGAGATACGTG 346
Query 370 AACCAGTGAGTCACCGTGGTGCAAACTCTAGTCGTAGTAAACGGCTTTGGCTTGGCACGT 429
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 347 AACCAGTGAGCCACCGTGGTGCAAACTCGAGTCGTAGTAAACGCCTTTGGCTTGGAACGT 406
Query 430 TTGCTACTGCAGCTGAAGCTGCTTTGGCTTACGACAGAGCTGCTAGTGTCATGTACGGAC 489
| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 407 TCGCTACTGCAGCCGAAGCCGCCTTGGCTTACGACAGAGCTGCTAGTGTCATGTACGGAC 466
Query 490 CCTATGCCAGGTTAAATTTCCCGGAAGATTTGGGTGGGGGAAGGAAGAAGGACGAGGAGG 549
|||||||| |||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 467 CCTATGCCCGGTTAAATTTCCCGGAAGATTTGGGTGGAGAAATGAAGAAGGACGAGGAGG 526
Query 550 CGGAAAGTTCGGGAGGCTATTGGTTGGAAACTAACAAAGCCGGTAATGGCGTGATTGAAA 609
|||||| ||||||||| ||||||||||||||| ||||| | ||| |||||||||||||||
Sbjct 527 CGGAAACTTCGGGAGGATATTGGTTGGAAACTGACAAATCTGGTCATGGCGTGATTGAAA 586
Query 610 CGGAAGGTGGAAAAGACTATGTAGTCTACAATGAAGACGCTATTGAGCTTGGCCATGACA 669
|| ||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 587 CGAAAGATCGAAAGGACTATGTAGTCTACAACGAAGACGCTATTGAGCTTGGCCATGACA 646
Query 670 AGACTCAGAATCCTATGACTGATAATGAAATAGTGAACCCAGCAGTGAAATCAGAGGAAG 729
||||| |||||||||| | | | ||| | |||||| |||||||||||||||||
Sbjct 647 AGACTGAGAATCCTAT---T-A-A-TGA----G--AACCCATCAGTGAAATCAGAGGAAA 694
Query 730 GTTACAGCTATGATCGATTCAAATTGGATAACGGATTGTTGTATAATGAACCTCAAAGCT 789
|||||||| ||| |||||||||||||| || |||||| |||| |||||||||||| |||
Sbjct 695 ATTACAGCTTTGAACGATTCAAATTGGAAAATGGATTGATGTACAATGAACCTCAAGGCT 754
Query 790 CCAGTTATCACCAGGGAGGTGGATTCGATTCATATTTTGAGTATTTCAGATTCTAGCTTA 849
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 755 CCAGTTATCACCAGGGAGGTGGATTCGATTCATATTTAGAGTTTTTCAGATTCTAGCTTA 814
Query 850 G-GATTTATGCTGCATCAATATACTAT 875
| | |||||||||||||||||||||||
Sbjct 815 GTG-TTTATGCTGCATCAATATACTAT 840
> Ahg887453 jgi|Araly1|887453|Al_scaffold_0096_7
Length=183
Score = 137 bits (74), Expect = 1e-31
Identities = 89/96 (93%), Gaps = 2/96 (2%)
Strand=Plus/Minus
Query 592 GTAATGGCGTGATTGAAACGGAA-GGTGGAAAAGACTATGTAGTCTACAATGAAGACGCT 650
||||||||||||||||||| ||| | |||||| ||||||||||||||||| || ||||||
Sbjct 95 GTAATGGCGTGATTGAAAC-GAATGATGGAAAGGACTATGTAGTCTACAAGGAGGACGCT 37
Query 651 ATTGAGCTTGGCCATGACAAGACTCAGAATCCTATG 686
|||||||||||||||||||||||| |||||||||||
Sbjct 36 ATTGAGCTTGGCCATGACAAGACTGAGAATCCTATG 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33205060707
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5