BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38360.1
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482846 jgi|Araly1|482846|fgenesh2_kg.4__1906__AT2G38360.1 1369 0.0
> Ahg482846 jgi|Araly1|482846|fgenesh2_kg.4__1906__AT2G38360.1
Length=939
Score = 1369 bits (741), Expect = 0.0
Identities = 896/964 (93%), Gaps = 37/964 (4%)
Strand=Plus/Plus
Query 21 CCCAATTCTTCAATTTCTTCAACCCTAATTCTTCTCTCTTTCTCAGATCTACC-AAACTT 79
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1 CCCAATTCTTCAATTTCTTCAACCCTAATTCTTCTCTGTTTCTCAGATCTACCAAAACTT 60
Query 80 G---------ATCTCCAATGGCTTCCTCAGCACCACCAGTCCTCCCAATCTCCAATCCCC 130
| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 GATCAATTCAATCTCCAATGGCTTCCTCAGCACCACCAGTCCTCCCAATCTCCAACCCCC 120
Query 131 AAACCGTTCCATCCGCCGCTCCTTCCTCCGTCGAATCTCAACCACCGATCGCTACTCCAG 190
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 AAACTGTTCCATCCGCCGCTCCTTCCTCCGTCGAATCTCAACCACCGATCGCAACTCCAG 180
Query 191 CTTTCCGCAATTTCATCAATCAGATCACCGAAACCGTTAAAAACGGTCTCTCTAAGCGTC 250
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 CTTTCCGCAATTTCATCAATCAGATCACCGAAACCGTCAAAAACGGTCTCTCTAAGCGTC 240
Query 251 GTCCTTGGGCTGAGCTCGCGGATCGTTCCGCATTATCCAAACCTGAGTCGATCTCCGACG 310
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 241 GTCCTTGGGCTGAGCTCGCGGATCGCTCCGCATTATCCAAACCTGACTCGATCTCCGACG 300
Query 311 CTGCTGTTCGTATCCGCAAGAATTACTCGTATTTCAAGGTTAATTACCTCACCGTCGCTA 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTGCTGTTCGTATCCGCAAGAATTACTCGTATTTCAAGGTTAATTACCTCACCGTCGCTA 360
Query 371 CAGCGATCGTCGGATtctctctcgtcactcatcctttctctctcgtcttcctcctctgtc 430
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 361 CAGCGATCGTCGGATTCTCTCTCGTGACTCATCCTTTCTCTCTCGTTTTCCTCCTCTGTC 420
Query 431 tcctcgcgtcgtggctcttcctctACTTGTTCCGTCCCACGGATCAGCCGATCGTTC-TA 489
|||||||||||||||||||||| ||| | ||||||||||| |||||||||||||| | |
Sbjct 421 TCCTCGCGTCGTGGCTCTTCCTTTACCTCTTCCGTCCCACCGATCAGCCGATCGT-CGTC 479
Query 490 TTCGGTCGTACATTCTCCGATCGTGAGACGTTAGGGTGTTTGATTTTGTTCAGTATCTTT 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTCGGTCGTACATTCTCCGATCGTGAGACGTTAGGGTGTTTGATTTTGTTCAGTATCTTT 539
Query 550 GTGATCTTCCTCACCGATGTTGGATCTGTTCTGGTTTCGGCTATGATGATTGGTGTTGCG 609
||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 540 GTGATTTTCCTCACCGATGTTGGATCTGTTCTTGTTTCGGCTATGATGGTTGGTGTTGCG 599
Query 610 TTGATCTGTGCTCATGGTGCTTTTAGAGCTCCGGAAGATCTTTTCCTTGATGAGCAAGAG 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGATCTGTGCTCATGGTGCTTTTAGAGCTCCGGAAGATCTTTTCCTTGATGAGCAAGAG 659
Query 670 CCTGCTGCTACCGGATTCCTCTCTTTCCTCGGTGGTGCCGCCTCTTCAGCCGCGCCTGCT 729
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 660 CCAGCTGCTACCGGATTCCTCTCTTTCCTCGGTGGCGCCGCCTCTTCAGCCGCGCCAGCT 719
Query 730 GTTATCGCCGCTCGCGTGTAAATGCGATTCCGATCTACCATTCCCTCGCCTGGGTAAATC 789
|| |||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||
Sbjct 720 GTCATCGCCGCTCGCGTGTAATTGCGACTCCGATCTACCATTCCCTCGCTTGGATAAATC 779
Query 790 TTTCTATATGATTCATTTGTTGAATTTGATACTTAGATTTTGtttttttAATCTGAAAAC 849
|||||||||||||| ||||||||||||||||||||| | || | ||
Sbjct 780 TTTCTATATGATTCGTTTGTTGAATTTGATACTTAG-----G-------AA-C--AA--- 821
Query 850 AATAAACGTGAAAATGTTGTGGATCTGGCCTAATTTTGGTTCTTGTTCATGGG-CAATAG 908
|||||| ||||| | ||||||||||||||||||||||||||||| ||||| |||| |
Sbjct 822 --TAAACGA-AAAAT-T-GTGGATCTGGCCTAATTTTGGTTCTTGTTTATGGGGCAAT-G 875
Query 909 CTATAGATGAAATATATATCTTTGCATGATTTTGATTTGATGAAGTTTTACTACCGTTTT 968
|||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||
Sbjct 876 CTATAGATGAAATATATACCTTTGAATGATTTTGATTTGAAGAAGTTTTACTACCGTTTT 935
Query 969 GTGT 972
||||
Sbjct 936 GTGT 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36216771150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5