BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38370.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901750 jgi|Araly1|901750|Al_scaffold_0004_2400 1531 0.0
Ahg952623 jgi|Araly1|952623|scaffold_9600004.1 398 9e-110
Ahg887452 jgi|Araly1|887452|Al_scaffold_0096_6 255 6e-67
Ahg901734 jgi|Araly1|901734|Al_scaffold_0004_2384 248 1e-64
Ahg485526 jgi|Araly1|485526|fgenesh2_kg.5__1518__AT3G51720.1 69.4 8e-11
> Ahg901750 jgi|Araly1|901750|Al_scaffold_0004_2400
Length=1551
Score = 1531 bits (829), Expect = 0.0
Identities = 1016/1103 (92%), Gaps = 25/1103 (2%)
Strand=Plus/Plus
Query 574 GAGGAAAGAGCTGCACTTGAGAAGACACGCGAGAGACTTATGGAGAAATCTCTCAAGGTG 633
||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 457 GAGGAGACAGCTGCACTTGAGAAGACACGCGAGAGACTTATGCAGAAATCTCTCAAGGTG 516
Query 634 TTTTCTTTAGAGGAAGAAGAAGTGAGAGTAAGATTTGCCAAGGAGGGTCAAACCG--GCG 691
||||||||||||||||||||||||||||||||||||| ||||||||| |||| | | |
Sbjct 517 ATTTCTTTAGAGGAAGAAGAAGTGAGAGTAAGATTTGCAAAGGAGGGTGAAACTGATGAG 576
Query 692 --AGA---A-AG----AT-C-TT-GGAATGTTGAATGAGGTTCAAAGATTGAGCCGTCAA 738
||| | || || | || ||||||||||||||||||||||||||||||||| ||
Sbjct 577 AAAGATTTAGAGAATAATGCGTTGGGAATGTTGAATGAGGTTCAAAGATTGAGCCGTGAA 636
Query 739 GCTCAAGAGGTGAAGAAAACCGGAGAGAATGCAGAGTTGGAAGTTGTGAAAGCAATGGCT 798
|||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||||||
Sbjct 637 GCTCAAGAGGTGAAGATAACAGGAGAGAATGCACAGTCGGAAGTTGTGAAAGCAATGGCG 696
Query 799 GAGACT-GAAAGCACAAGAGATAAGATTAGAACAGCTAAGATAAGGTTGGTGGCTGCTAG 857
|||| | |||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 697 GAGA-TCGAAAGCACAAGAGACAAGATTAGAACAGCTAAGATTAGGTTGGTGGCTGCAAG 755
Query 858 AAAGATGAAGGAAGCGGCCAGAGAGGCTGAGGCGGTTGCAATCGCAGAGATTGAGGCTGT 917
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 756 AAAGATGAAGGAAGCAGCCAGAGCGGCTGAGGCGGTTGCAATCGCAGAGATTGAGGCTGT 815
Query 918 TACTGGAAGTATGAATGTTGGTAAGGCCGAGGCTGTGACTATCTCTGCTGAAGAGTATTC 977
|||||||||||| || |||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 816 TACTGGAAGTATAAACGTTGAAAAGGCTGAGGCTGTGACTATCTCTGCTGAAGAGTACGC 875
Query 978 TGTGCTTGCTCGTAGTGCTAGAGACGCAGAGGAAGAGGCGAGAAAGCGAGTGGAAGATGC 1037
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 876 TGTGCTTGCTCGTAGTGCTAGAGACGCCGAGGAAGAGGCGAGAAAGAGAGTGGAAGATGC 935
Query 1038 AATGTCGAGAGTTGAAGAAGCTAATGTTTCAAAGAAGGATGTTCTGAAGAAAGTTGACGA 1097
||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||||
Sbjct 936 AATGTCGAGAGTTGAAGAAGCGAATGTTTCAAAGATGAATGTTCTGAAGAAAGTAGACGA 995
Query 1098 AGCGGCTCAAGAAATTGAAACCAGCAAGAGAGTATTGGAGGAAGCTGTGGAGAGAGTTGA 1157
||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 996 AGCAGCTCAAGAGATTGAAACCAGCAAGAGGGTATTGGAGGAAGCTGTTGAAAGAGTTGA 1055
Query 1158 CGCTGCAAATGCTTCGAAGA-TCGAAGCAGAAGAGGCGCTGCGAAAATGGCGGTCAGAGA 1216
|||||||| |||||| || | |||| |||||||||| ||||||||| |||||||||||||
Sbjct 1056 CGCTGCAACTGCTTC-AAAACTCGATGCAGAAGAGGTGCTGCGAAACTGGCGGTCAGAGA 1114
Query 1217 ATGGACAGAGGAGAAGATTATCTTCTTCGGTGAACAACACTTCCAAGTTCAAGAGCAGAA 1276
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 1115 ATGGACAGAGGAGAAGATTATCTTCTTCGGTAAACAACACTTCTAAGTTCAAGAGCA-AA 1173
Query 1277 GAGAGACAACAACACGTCTGATGGATGTAAACGGTCTGCATCTGACATACGATGTTGTTG 1336
||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1174 -AGAGA-GTCAACGCGTCTGATGGATGTAAATGGTCTGCATCTGACATACGATGTTGTTC 1231
Query 1337 ACGGGTCATCATCTTCTTCAACGGTCCCAGTCTTGAAACCAACAATGTCAATAGGACAAA 1396
||||||||||||||||||| | |||||||||||||| ||||||||||||||||| ||||
Sbjct 1232 ACGGGTCATCATCTTCTTC-A--GTCCCAGTCTTGAAGCCAACAATGTCAATAGGGCAAA 1288
Query 1397 TACTGAGCAAGAAGCTACTTCTTGCAGAGGATTCAGATATGAATGTTGCTAATGAGAGAA 1456
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 TACTCAGCAAGAAGCTACTTCTTGCAGAGGATTCAGATATGAATGTTGCTAATGAGAGAA 1348
Query 1457 GAAAAATGTCGTTGGGTCAGATGCTTGCAAAGAATAGCAGTAGTGATAAAACTGTAAGCa 1516
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1349 GAAAAATGTCATTGGGTCAGATGCTTGCAAAGAATAGCAATAGTGATAAAACTGTAAGCA 1408
Query 1517 agagaagtgaagggaaagagaatgagaaaaggacgaagactcgaaagagaaagagTTTCG 1576
|||| |||||||||||||| || | ||||||| ||| |||||||||||||||||||||||
Sbjct 1409 AGAGGAGTGAAGGGAAAGAAAACGGGAAAAGGTCGACGACTCGAAAGAGAAAGAGTTTCG 1468
Query 1577 GATTTGCTAAGATCTCTGTGTTGTTgaacaaagagagcaagaacaagaagaagaagaaaa 1636
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1469 GGTTTGCTAAGATCTCTGTGTTGTTGAACAAAGAGAGCAAGAATAAGAAGAAGAAGAAAA 1528
Query 1637 agaTAGCTTTGAACTTAAGGTGA 1659
|||||||||||||||||||||||
Sbjct 1529 AGATAGCTTTGAACTTAAGGTGA 1551
Score = 403 bits (218), Expect = 2e-111
Identities = 265/287 (92%), Gaps = 6/287 (2%)
Strand=Plus/Plus
Query 155 AGAAGC--CTGAGATAGACACTTCGGCTCCGTTCGAGTCAGTGAGAGAAGCAGCCACTCG 212
|||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 177 AGAAGCTTCTCAGATAGACACTTCTGCTCCGTTCGAGTCAGTGAGAGAAGCAGCCACTCG 236
Query 213 TTTCGGCGGTTTTGGTTTCTGGAGACCTTCTCTCAATAAACTCCCAGATGCTTCTCAGGA 272
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 237 TTTCGGCGGTTTTGGTTTCTGGAGACCTTCTCACAATAAACTCCCAGAAGCTTCTCAGGA 296
Query 273 AAATA-TCCAAGAACCTGATATCATGGGACTCAAAGCACAAGCTT-TCGAGCTACAAAGA 330
||| | | ||||| |||||||||| | |||||||||||| |||| | |||||||| |||
Sbjct 297 AAA-AGTTGAAGAAACTGATATCATTGAACTCAAAGCACAGGCTTCT-GAGCTACAGAGA 354
Query 331 GAACTAATTGTTAAAGAACGCGAAACGCTAGAGGTGTTGAAGGAGCTTGAGGCGACTAAA 390
|| |||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 355 GATCTAATTGTGAAAGAACGTGAAACGCTAGAGATGTTGAAGGAGCTTGAGGCGACTAAA 414
Query 391 GCCACAGTCTTAAAGCTGCAGCAGAGGAATGAAGCTTATGAGGAGGA 437
|||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 415 GCCACAGTCTTAAAGCTGCAGCAGAGGAATGAAGTTTATGAGGAGGA 461
Score = 204 bits (110), Expect = 2e-51
Identities = 150/167 (90%), Gaps = 11/167 (7%)
Strand=Plus/Plus
Query 105 AGAACCGG-GCACTGTAAACCCTGACTCGGATCTATCGAATGGTCGAGCTGAGAAGCCTG 163
||| |||| | ||| ||||||||||||||||||| |||||||| | | | |||| |
Sbjct 33 AGAGCCGGTG-ACTTTAAACCCTGACTCGGATCTGTCGAATGG-C---C---G-AGCC-G 82
Query 164 AGATAGACACTTCGGCTCCGTTCGAGTCAGTGAGAGAAGCAGCCACTCGTTTCGGCGGTT 223
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 AGATAGACACTTCTGCTCCGTTCGAGTCAGTGAGAGAAGCAGCCACTCGTTTCGGCGGTT 142
Query 224 TTGGTTTCTGGAGACCTTCTCTCAATAAACTCCCAGATGCTTCTCAG 270
||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 143 TTGGTTTCTGGAGACCTTCTCACAATAAACTCCCAGAAGCTTCTCAG 189
> Ahg952623 jgi|Araly1|952623|scaffold_9600004.1
Length=309
Score = 398 bits (215), Expect = 9e-110
Identities = 275/302 (91%), Gaps = 12/302 (4%)
Strand=Plus/Plus
Query 1360 GTCCCAGTCTTGAAACCAACAATGTCAATAGGACAAATACTGAGCAAGAAGCTACTTCTT 1419
||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 2 GTCCCTGTCTTGAAGCCAACAATGTCAATAGGGCAAATACTCAGCAAGAAGCTACTTCTT 61
Query 1420 GCAGAGGATTCAGATATGAATGTTGCTAATGAGAGAAGAAAAATGTCGTTGGGTCAGATG 1479
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 62 GCAGAGGATTCAGATATGAATGTTGCTAGCGAGAGAAGGAAAATGTCGTTGGGTCAGATG 121
Query 1480 CTTGCAAAGAATAGCAGTAGTGATAAAACTGTAAGCaagagaagtgaagggaaagagaat 1539
|| ||||||||||||| |||||||||| ||||||||||||| |||||||||||| || |
Sbjct 122 CTGGCAAAGAATAGCAATAGTGATAAACCTGTAAGCAAGAGGAGTGAAGGGAAA-AGG-T 179
Query 1540 gagaaaaggacgaagactcgaaagagaaagagTTTCGGATTTGCTAAGATCTCTGTGTTG 1599
|| | || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 C-GA------C-AA--CTCGAAAGAGAAAGAGTTTCGGATTTGCTAAGATCTCTGTCTTG 229
Query 1600 TTgaacaaagagagcaagaacaagaagaagaagaaaaagaTAGCTTTGAACTTAAGGTGA 1659
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 230 TTGAACAAAGAGAGCAAGAATAAGAAGAAGAAGAAAAAGATAGCTTTGAACTTAAGGTGA 289
Query 1660 TA 1661
||
Sbjct 290 TA 291
> Ahg887452 jgi|Araly1|887452|Al_scaffold_0096_6
Length=576
Score = 255 bits (138), Expect = 6e-67
Identities = 219/255 (86%), Gaps = 17/255 (7%)
Strand=Plus/Plus
Query 533 GTATACGCGAATCTGTGGAGCAGTTGAAGAATAAACTGAATGAGG-AAAGAGCTGCACTT 591
||||||||| |||||| |||| ||||||||| ||||||||||||| ||||| ||| ||||
Sbjct 302 GTATACGCGCATCTGTTGAGCTGTTGAAGAAGAAACTGAATGAGGAAAAGA-CTGAACTT 360
Query 592 GAGAAGACACGCGAGAGACTTATGGAGAAATCTCTCAAGGTGTTTTCTTTAGAGGAAGAA 651
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 361 GAGAAGACACGCGAGAGACTTATGCAGAAATCTCTCAAGGTGATTTCTTTAGAGGAAGAA 420
Query 652 GAAGTGAGAGTAAGATTTGCCAAGGAGGGTCAAACCGGCGAGAAAGATCTTG-GAAT--- 707
||||||||||||||||| | |||| ||||| | ||| | || |||||||| | ||||
Sbjct 421 GAAGTGAGAGTAAGATTCGTCAAGAAGGGTGACACCAGAGATAAAGATCTAGAGAATAAT 480
Query 708 G---T-----TG--A-ATGAGGTTCAAAGATTGAGCCGTCAAGCTCAAGAGGTGAAGAAA 756
| | || | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 481 GCGATGGGAATGTTATATGAGGTTCAAAGATTGAGCCGTGAAGCTCAAGAGGTGAAGAAA 540
Query 757 ACCGGAGAGAATGCA 771
|| |||||| |||||
Sbjct 541 ACAGGAGAGGATGCA 555
Score = 163 bits (88), Expect = 4e-39
Identities = 136/158 (86%), Gaps = 8/158 (5%)
Strand=Plus/Plus
Query 271 GAAAATATCCAAGAACCTGATATCATGGGACTCAAAGCACAAGCTTTC-GAGCTACA-AA 328
|||||| || ||||| |||||||||| | |||||||||| |||| | | |||||||| ||
Sbjct 112 GAAAATGTCGAAGAAACTGATATCATTGAACTCAAAGCAGAAGC-TGCTGAGCTACAGAA 170
Query 329 GAGAACTAATTGTT-AAAGAACGCGAAACGCTAGAGGTGTTGAAGGAGCTTGAGGCGACT 387
|| |||||| || |||||| ||||||| || |||||||||||||||||||||||||||
Sbjct 171 -CGATCTAATT-TTGAAAGAAAGCGAAACACTTGAGGTGTTGAAGGAGCTTGAGGCGACT 228
Query 388 AAAGCCACAGTCT-TAAAGCTGCAGCAGAGGAATGAAG 424
||||||||||| | ||||||| ||||||||||| ||||
Sbjct 229 AAAGCCACAGT-TGTAAAGCTACAGCAGAGGAAGGAAG 265
> Ahg901734 jgi|Araly1|901734|Al_scaffold_0004_2384
Length=360
Score = 248 bits (134), Expect = 1e-64
Identities = 164/178 (92%), Gaps = 3/178 (2%)
Strand=Plus/Plus
Query 703 GGAATGTTGAATGAGGTTCAAAGATTGAGCCGTCAAGCTCAAGAGGTGAAGAAAACCGGA 762
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 97 GGAATGTTGAATGAGGTTCAAAGATTGAGCCGTGAAGCTCAAGAGGTGAAGAAAACAGGA 156
Query 763 GAGAATGCAGAGTTGGAAGTTGTGAAAGCAATGGCTGAGACTGAAAGCACAAGAGATAAG 822
||||||||| ||| |||||||||||||||||||| || | |||||||||||||| |||
Sbjct 157 GAGAATGCACAGTCGGAAGTTGTGAAAGCAATGGA-GAT-C-GAAAGCACAAGAGACAAG 213
Query 823 ATTAGAACAGCTAAGATAAGGTTGGTGGCTGCTAGAAAGATGAAGGAAGCGGCCAGAG 880
||||||||||||||| | |||||||||||||| ||||||||||||||||| |||||||
Sbjct 214 ATTAGAACAGCTAAGGTTAGGTTGGTGGCTGCAAGAAAGATGAAGGAAGCAGCCAGAG 271
> Ahg485526 jgi|Araly1|485526|fgenesh2_kg.5__1518__AT3G51720.1
Length=1400
Score = 69.4 bits (37), Expect = 8e-11
Identities = 50/56 (89%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 557 TGAAGAATAAACT-GAATGAGGAAAGAGCTGCACTTGAGAAGACACGCGAGAGACT 611
|||| || | ||| ||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 464 TGAACAAGAGACTGGAA-GAGGAAAGAGCTGCACTTGAGAAGACACGAGAGAGACT 518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66543658015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5