BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38390.1
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321537 jgi|Araly1|321537|fgenesh1_pm.C_scaffold_4001594 1513 0.0
> Ahg321537 jgi|Araly1|321537|fgenesh1_pm.C_scaffold_4001594
Length=1050
Score = 1513 bits (819), Expect = 0.0
Identities = 975/1052 (93%), Gaps = 4/1052 (0%)
Strand=Plus/Plus
Query 46 ATGGGGTTTTCGTCTTCATTATCTTGCAGTGCTATGGGAGCCCTAATAGTGGGTTGCCTT 105
||||| |||||| ||| ||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 1 ATGGGTTTTTCGCCTTTATTTTCTTGCAGTGCAATGGGAGCCCTAATTTTGGGTTGCCTT 60
Query 106 CTGCTTCAAGCATCAAACTCTAATGCTCAGTTGAGACCTGACTTCTACTTCAGGACTTGC 165
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 61 CTGCTTCAAGCATCAAACTCTAATGCTCAGTTGAGGCCTGATTTCTACTTCAGGACTTGC 120
Query 166 CCACCTATTTTCA-ACATCATTGGGGATACCATCGTCAATGAGCTGCGGACTGATCCTCG 224
||| || |||||| | ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 121 CCATCTGTTTTCAGA-ATCATTGGGGATACCATCGTCGATGAACTGCGGACTGATCCTCG 179
Query 225 TATTGCCGCGAGCCTCCTTCGGCTTCACTTCCATGACTGCTTTGTTCGTGGTTGTGATGC 284
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 TATTGCCGCGAGCATCCTTCGTCTTCACTTCCATGACTGCTTTGTTCGTGGTTGTGATGC 239
Query 285 ATCGATCTTGCTTGACAATTCCACATCATTCCGGACCGAGAAAGATGCTGCTCCAAACAA 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATCGATCTTGCTTGACAATTCCACATCATTCCGGACCGAGAAAGATGCTGCTCCAAACAA 299
Query 345 AAATTCGGTTCGAGGGTTCGATGTCATAGATAGAATGAAAGCAGCCATTGAGAGAGCTTG 404
|||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 300 AAATTCGGTTAGAGGGTTCAATGTCATAGATAGAATGAAATCAGCCCTTGAGAGAGCTTG 359
Query 405 CCCAAGAACAGTTTCTTGCGCAGATATTATCACCATCGCCTCTCAGATATCAGTTCTTTT 464
|||||||||||| ||||| |||||||| |||||||||||||||| |||||||| |||||
Sbjct 360 CCCAAGAACAGTATCTTGTGCAGATATCCTCACCATCGCCTCTCAAATATCAGTGCTTTT 419
Query 465 GTCTGGCGGTCCATGGTGGCCAGTTCCGTTGGGGAGAAGAGACAGCGTAGAAGCTTTCTT 524
|||||| |||||||||||||| ||||| |||||||||||||||||| |||||||||||||
Sbjct 420 GTCTGGGGGTCCATGGTGGCCGGTTCCCTTGGGGAGAAGAGACAGCATAGAAGCTTTCTT 479
Query 525 CG-CTCTGGCTAATACAGCTCTTCCCTCTCCATTTTCCACTCTTACTCAACTTAAAACAG 583
| | ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 480 CAAC-CTGGCTAATACAGCTCTTCCCTCTCCATTTTTCACTCTTACTCAACTTAAAGCAG 538
Query 584 CTTTTGCTGACGTTGGCCTAAACCGCCCTTCGGATTTAGTCGCCCTCTCCGGTGGTCACA 643
||||||||||||||||||||||||| |||||||| ||||||| || |||||||||||||
Sbjct 539 CTTTTGCTGACGTTGGCCTAAACCGGGCTTCGGATCTAGTCGCTCTTTCCGGTGGTCACA 598
Query 644 CATTTGGAAAAGCACAATGCCAATTCGTGACACCTCGTCTTTACAACTTCAACGGTACCA 703
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 599 CATTTGGAAGAGCACAATGCCAATTCGTGACGCCTCGTCTTTACAACTTCAACGGAACCA 658
Query 704 ACAGACCAGACCCAAGTTTGAACCCAACTTACCTCGTTGAACTCCGTCGATTGTGTCCTC 763
|||| |||||||||||| ||||||||||||||||||| ||||| |||| |||||||||||
Sbjct 659 ACAGTCCAGACCCAAGTCTGAACCCAACTTACCTCGTCGAACTTCGTCAATTGTGTCCTC 718
Query 764 AAAACGGAAACGGCACCGTTCTGGTTAACTTCGATTCCGTGACTCCAACTACTTTCGATA 823
||||||||||||| |||||||| || ||||| ||| |||||||||||| | ||||||||
Sbjct 719 AAAACGGAAACGGTACCGTTCTTGTCAACTTTGATCCCGTGACTCCAAATGCTTTCGATC 778
Query 824 GACAATATTACACCAATCTTCTTAATGGGAAAGGTTTGATTCAGAGTGACCAAGTGCTTT 883
| ||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||| |
Sbjct 779 GCCAATATTACACCAATCTTCGTAATGGGAAAGGTCTGATTCAGACTGACCAAGTGCTCT 838
Query 884 TCTCAACTCCAGGAGCTGATACGATTCCACTAGTAAACCAATACAGCAGCAACACGTTCG 943
|||| ||||||||||| || |||| | |||||||||||||||||||||||||||||||||
Sbjct 839 TCTCGACTCCAGGAGCCGACACGACTACACTAGTAAACCAATACAGCAGCAACACGTTCG 898
Query 944 TGTTCTTTGGAGCATTCGTTGATGCAATGATTAGGATGGGAAATCTTAAACCTTTGACTG 1003
|||||||||||||||||| || |||||||| |||||||||||||||| ||| |||||||
Sbjct 899 CGTTCTTTGGAGCATTCGTCGACGCAATGATCAGGATGGGAAATCTTAGACCCTTGACTG 958
Query 1004 GAACTCAAGGAGAGATAAGACAGAATTGTAGGGTTGTGAATCCAAGAATTAGGGTTGTGG 1063
|||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||
Sbjct 959 GAACTCAAGGAGAGATAAGACAGAATTGTAGGGTTGTGAACCCACGAATTAGTGTTGTGG 1018
Query 1064 AGAACGACGATGGTGTTGTGAGTTCTATCTGA 1095
|||||||||||||||||||||||||||| |||
Sbjct 1019 AGAACGACGATGGTGTTGTGAGTTCTATTTGA 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45671254566
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5