BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G38390.1 Length=1223 Score E Sequences producing significant alignments: (Bits) Value Ahg321537 jgi|Araly1|321537|fgenesh1_pm.C_scaffold_4001594 1513 0.0 > Ahg321537 jgi|Araly1|321537|fgenesh1_pm.C_scaffold_4001594 Length=1050 Score = 1513 bits (819), Expect = 0.0 Identities = 975/1052 (93%), Gaps = 4/1052 (0%) Strand=Plus/Plus Query 46 ATGGGGTTTTCGTCTTCATTATCTTGCAGTGCTATGGGAGCCCTAATAGTGGGTTGCCTT 105 ||||| |||||| ||| ||| ||||||||||| |||||||||||||| ||||||||||| Sbjct 1 ATGGGTTTTTCGCCTTTATTTTCTTGCAGTGCAATGGGAGCCCTAATTTTGGGTTGCCTT 60 Query 106 CTGCTTCAAGCATCAAACTCTAATGCTCAGTTGAGACCTGACTTCTACTTCAGGACTTGC 165 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 61 CTGCTTCAAGCATCAAACTCTAATGCTCAGTTGAGGCCTGATTTCTACTTCAGGACTTGC 120 Query 166 CCACCTATTTTCA-ACATCATTGGGGATACCATCGTCAATGAGCTGCGGACTGATCCTCG 224 ||| || |||||| | ||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 121 CCATCTGTTTTCAGA-ATCATTGGGGATACCATCGTCGATGAACTGCGGACTGATCCTCG 179 Query 225 TATTGCCGCGAGCCTCCTTCGGCTTCACTTCCATGACTGCTTTGTTCGTGGTTGTGATGC 284 ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 180 TATTGCCGCGAGCATCCTTCGTCTTCACTTCCATGACTGCTTTGTTCGTGGTTGTGATGC 239 Query 285 ATCGATCTTGCTTGACAATTCCACATCATTCCGGACCGAGAAAGATGCTGCTCCAAACAA 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 ATCGATCTTGCTTGACAATTCCACATCATTCCGGACCGAGAAAGATGCTGCTCCAAACAA 299 Query 345 AAATTCGGTTCGAGGGTTCGATGTCATAGATAGAATGAAAGCAGCCATTGAGAGAGCTTG 404 |||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||| Sbjct 300 AAATTCGGTTAGAGGGTTCAATGTCATAGATAGAATGAAATCAGCCCTTGAGAGAGCTTG 359 Query 405 CCCAAGAACAGTTTCTTGCGCAGATATTATCACCATCGCCTCTCAGATATCAGTTCTTTT 464 |||||||||||| ||||| |||||||| |||||||||||||||| |||||||| ||||| Sbjct 360 CCCAAGAACAGTATCTTGTGCAGATATCCTCACCATCGCCTCTCAAATATCAGTGCTTTT 419 Query 465 GTCTGGCGGTCCATGGTGGCCAGTTCCGTTGGGGAGAAGAGACAGCGTAGAAGCTTTCTT 524 |||||| |||||||||||||| ||||| |||||||||||||||||| ||||||||||||| Sbjct 420 GTCTGGGGGTCCATGGTGGCCGGTTCCCTTGGGGAGAAGAGACAGCATAGAAGCTTTCTT 479 Query 525 CG-CTCTGGCTAATACAGCTCTTCCCTCTCCATTTTCCACTCTTACTCAACTTAAAACAG 583 | | ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 480 CAAC-CTGGCTAATACAGCTCTTCCCTCTCCATTTTTCACTCTTACTCAACTTAAAGCAG 538 Query 584 CTTTTGCTGACGTTGGCCTAAACCGCCCTTCGGATTTAGTCGCCCTCTCCGGTGGTCACA 643 ||||||||||||||||||||||||| |||||||| ||||||| || ||||||||||||| Sbjct 539 CTTTTGCTGACGTTGGCCTAAACCGGGCTTCGGATCTAGTCGCTCTTTCCGGTGGTCACA 598 Query 644 CATTTGGAAAAGCACAATGCCAATTCGTGACACCTCGTCTTTACAACTTCAACGGTACCA 703 ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 599 CATTTGGAAGAGCACAATGCCAATTCGTGACGCCTCGTCTTTACAACTTCAACGGAACCA 658 Query 704 ACAGACCAGACCCAAGTTTGAACCCAACTTACCTCGTTGAACTCCGTCGATTGTGTCCTC 763 |||| |||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||| Sbjct 659 ACAGTCCAGACCCAAGTCTGAACCCAACTTACCTCGTCGAACTTCGTCAATTGTGTCCTC 718 Query 764 AAAACGGAAACGGCACCGTTCTGGTTAACTTCGATTCCGTGACTCCAACTACTTTCGATA 823 ||||||||||||| |||||||| || ||||| ||| |||||||||||| | |||||||| Sbjct 719 AAAACGGAAACGGTACCGTTCTTGTCAACTTTGATCCCGTGACTCCAAATGCTTTCGATC 778 Query 824 GACAATATTACACCAATCTTCTTAATGGGAAAGGTTTGATTCAGAGTGACCAAGTGCTTT 883 | ||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||| | Sbjct 779 GCCAATATTACACCAATCTTCGTAATGGGAAAGGTCTGATTCAGACTGACCAAGTGCTCT 838 Query 884 TCTCAACTCCAGGAGCTGATACGATTCCACTAGTAAACCAATACAGCAGCAACACGTTCG 943 |||| ||||||||||| || |||| | ||||||||||||||||||||||||||||||||| Sbjct 839 TCTCGACTCCAGGAGCCGACACGACTACACTAGTAAACCAATACAGCAGCAACACGTTCG 898 Query 944 TGTTCTTTGGAGCATTCGTTGATGCAATGATTAGGATGGGAAATCTTAAACCTTTGACTG 1003 |||||||||||||||||| || |||||||| |||||||||||||||| ||| ||||||| Sbjct 899 CGTTCTTTGGAGCATTCGTCGACGCAATGATCAGGATGGGAAATCTTAGACCCTTGACTG 958 Query 1004 GAACTCAAGGAGAGATAAGACAGAATTGTAGGGTTGTGAATCCAAGAATTAGGGTTGTGG 1063 |||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||| Sbjct 959 GAACTCAAGGAGAGATAAGACAGAATTGTAGGGTTGTGAACCCACGAATTAGTGTTGTGG 1018 Query 1064 AGAACGACGATGGTGTTGTGAGTTCTATCTGA 1095 |||||||||||||||||||||||||||| ||| Sbjct 1019 AGAACGACGATGGTGTTGTGAGTTCTATTTGA 1050 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45671254566 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5