BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38400.2
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934580 jgi|Araly1|934580|scaffold_402568.1 2285 0.0
> Ahg934580 jgi|Araly1|934580|scaffold_402568.1
Length=1474
Score = 2285 bits (1237), Expect = 0.0
Identities = 1351/1407 (96%), Gaps = 3/1407 (0%)
Strand=Plus/Plus
Query 73 CGAAACAGAGAAAACCATGCAGAGATTCGCGGCGAAAAGATCGGTGCAAAACATTTCCGT 132
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 6 CGAAACAGAG-AAACCATGCAGAGATTCACGGCGAAAAGATCGGTGCAAAACATTTCCGT 64
Query 133 CTCTCTATGGCGTCGATGTATCTCATCGACGTCTCAGGCAGCGACAGCTTCCGTTAAGGA 192
|| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 65 TTCCCTTTGGCGTCGATGTATCTCATCGACGTCTCAGGCTGCGACAGCTTCCGTTAAGGA 124
Query 193 TTCCGACGAGTTTCAGGCGAGGCTTCCTCCTTTTGCTTACACTCCTCCGCCGTATACTGG 252
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 125 TTCCGATGAGTTTCAGGCGAGGCTTCCTCCGTTTGCTTACACTCCTCCGCCGTATACTGG 184
Query 253 TCCTTCCGCCGATGTTATCCTT-AGCAAAAGGAAGGAGTTTCTCAGTCCTTCCATGTTCT 311
|||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||
Sbjct 185 TCCTTCCGCCGATGTTATCCTTGAG-AAAAGAAAGGAGTTTCTTAGTCCTTCCATGTTCT 243
Query 312 GTCTCTATCGGAAACCGTTAAACATTGTGGATGGGAAAATGCAGTATCTATTTGATGAGA 371
|||||||||| |||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 244 GTCTCTATCGCAAACCGTTGAATATTGTGGATGGGAAGATGCAGTATCTATTTGATGAGA 303
Query 372 GTGGTCGGAGATATTTAGATGCATTTGCTGGGATTGCTGTTGTGAATTGTGGACATTGTC 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GTGGTCGGAGATATTTAGATGCATTTGCTGGGATTGCTGTTGTGAATTGTGGACATTGTC 363
Query 432 ATCCAGATGTGGTTGAGCCAGTGATTAATCAAATCAAGAGGCTTCAGCATCCTACTGTTC 491
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 364 ATCCAGATGTGGTTGAGCCAGTGATCAATCAAATCAAGAGACTTCAGCATCCTACTGTTC 423
Query 492 TTTACCTTAACCATGCCATTGCTGATTTCTCTGAGGCTCTTGCTTCTAAACTTCCCGGTG 551
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 424 TTTACCTTAACCATGCCATTGCTGAGTTCTCTGAGGCTCTAGCTTCTAAACTTCCCGGTG 483
Query 552 ATCTAAAGGTGGTGTTTTTCACTAACTCAGGGACAGAGGCTAATGAATTGGCGCTTATGA 611
|| ||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 484 ATTTAAAGGTTGTGTTTTTCACTAACTCGGGGACGGAGGCTAATGAATTGGCACTTATGA 543
Query 612 TGGCTAAGTTGTATACTGGATGTCAAGATATTGTGGCGGTTCGAAACGGGTATCATGGTA 671
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 544 TGGCTAAATTGTATACTGGATGTCAAGATATTGTGTCGGTTCGAAACGGGTATCATGGTA 603
Query 672 ATGCAGCTGCAACTATGGGGGCTACTGGTCAGAGTATGTGGAAGTTTAATGTGGTTCAGA 731
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 ATGCGGCTGCAACTATGGGGGCTACTGGTCAGAGTATGTGGAAGTTTAATGTGGTTCAGA 663
Query 732 ATAGTGTTCATCATGCTTTGAACCCTGATCCTTATAGAGGTGTGTTTGGTTCTGATGGAG 791
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 664 ATAGTGTTCATCATGCTTTGAACCCTGATCCATATAGAGGTGTGTTTGGTTCTGATGGAG 723
Query 792 AGAAGTATGCAAAGGATTTGCAAGATCTTATTCAATATGGTACGACTGGTCACATTGCCG 851
|||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||| |
Sbjct 724 AGAAGTATGCAAAGGAATTGCAAGATCTTATTCAATATGGCACGACCGGACACATTGCTG 783
Query 852 GTTTTATTTGTGAAGCTATTCAGGGAGTTGGAGGGATCGTGGAACTAGCACCGGGATATT 911
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 784 GTTTTATTTGTGAAGCTATTCAGGGAGTTGGAGGGATTGTGGAACTAGCACCGGGCTATT 843
Query 912 TGTCAGCGGCTTACGATACTGTTAAGAAAGCTGGTGGATTGTTCATTGCGGATGAAGTTC 971
|||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||||||
Sbjct 844 TGTCAGCGGCTTACGATACTGTAAAGAAAGCTGGAGGACTGTTCATCGCGGATGAAGTTC 903
Query 972 AGTCTGGTTTCGCACGTACTGGTAACTTTTGGGGATTTGAGGCACACAATGTTGTCCCTG 1031
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 904 AGTCTGGATTCGCACGTACTGGTAACTTTTGGGGATTTGAGGCTCACAATGTTGTCCCTG 963
Query 1032 ACATAGTAACCATGGCAAAGGGAATTGGGAATGGGTTTCCTTTGGGAGCTGTTGTGACAA 1091
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 964 ACATAGTAACCATGGCAAAGGGAATTGGGAATGGGTTTCCTTTGGGAGCGGTTGTGACAA 1023
Query 1092 CTCCAGAGATAGCAGGAGTGTTGACTCGCCGTAGCTACTTCAATACATTTGGTGGAAATT 1151
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 CTCCAGAGATAGCAGCAGTATTGACTCGCCGTAGCTACTTCAATACATTTGGTGGAAATT 1083
Query 1152 CTGTGTCTACTACAGCTGGTCTCGCTGTTCTGAATGTGATTGAGAAAGAGAAGCTTCAGG 1211
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1084 CTGTGTCTACTACAGCTGGTCTCGCTGTTCTGAAGGTGATTGAGAAAGAGAAGCTTCAGG 1143
Query 1212 AAAATGCTGCAATGGTTGGATCCTATCTGAAAGAAAAACTCACACAGCTGAAAGAAAAAC 1271
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1144 AAAATGCGGCAATGGTCGGATCCTATCTGAAAGAAAAACTCACACAGCTGAAAGAGAAAC 1203
Query 1272 ACGAGATTATCGGGGATGTCCGGGGAAGAGGACTGATGCTTGGAGTGGAGCTGGTGAGTG 1331
|||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1204 ACGAAATTATCGGGGATGTACGGGGAAGAGGACTGATGCTTGGAGTAGAGCTGGTGAGTG 1263
Query 1332 ATCGCAAGCTTAAGACTCCTGCAACCGCCGAGACTCTGCACATTATGGATCAAATGAAAG 1391
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1264 ATCGCAAGCTTAAGACTCCTGCAACCGCTGAGACTCTGCACATTATGGATCAAATGAAAG 1323
Query 1392 AATTGGGTGTGTTGATTGGAAAAGGAGGCTACTTTGGAAATGTCTTTAGAATCACACCAC 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 AATTGGGTGTGTTGATTGGAAAAGGAGGCTACTTTGGAAATGTCTTTAGAATCACACCAC 1383
Query 1452 CTCTCTGCTTCACCAAGGACGATGCAG 1478
||||||||||||| ||||| || ||||
Sbjct 1384 CTCTCTGCTTCACTAAGGATGACGCAG 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60487309060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5