BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38420.1
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482852 jgi|Araly1|482852|fgenesh2_kg.4__1912__AT2G38420.1 2222 0.0
> Ahg482852 jgi|Araly1|482852|fgenesh2_kg.4__1912__AT2G38420.1
Length=1413
Score = 2222 bits (1203), Expect = 0.0
Identities = 1346/1416 (95%), Gaps = 5/1416 (0%)
Strand=Plus/Plus
Query 16 TCATGGCACCGAATGTCAAATTTCATGAGAAAGTATCGAAAAATTCCTCATTCGTCTTTC 75
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1 TCATGGCACCGAATGTCAAATTTCATGAGAAAGTATCGAAAAATTCCTCAGTCATCTTTC 60
Query 76 AAAACCAAATGGAACGAGAATCTCAAGCAGAAGTATGCCATGGAAGAGCTAAGAAGCAAC 135
|||||||||||||| |||||||||||||| || || |||||||||||||||||||||||
Sbjct 61 AAAACCAAATGGAATGAGAATCTCAAGCAAAAATACGCCATGGAAGAGCTAAGAAGCAAT 120
Query 136 CTTCTCACAGATTCAGAGAATGCTTCTGTTATGCGAACCCTCTTAAGCTCATTCCAACTC 195
|||||| ||||||||||||||| ||||||||||||||||||| ||||||| ||||||||
Sbjct 121 CTTCTCGCAGATTCAGAGAATGGTTCTGTTATGCGAACCCTCGTAAGCTCTTTCCAACTA 180
Query 196 CATAACTGTGAGCCCACTCCTCAAGCTTACAGATTCGTTATCAAAACCCTAGCTAAATCC 255
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 CATAACTGCGAGCCCACTCCTCAAGCTTACAGATTCGTTATCAAAACCCTAGCTAAAACC 240
Query 256 TCTCAGCTTGAGAATATTTCATCTGTTCTTTACCACCTTGAAGTCTCTGAGAAGTTCGAT 315
|||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 TCTCAGCTTGAGAACATTGCATCTGTTCTTGACCACCTTGAAGTCTCTGAGAAGTTCGAC 300
Query 316 ACACCTGAATCCATTTTCAGAGATGTCATCGCTGCTTATGGCTTCTCCGGTAGAATCGAA 375
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 301 ACACCTGAATCCATTTTCAGGGATGTCATCGCTGCTTATGGCTTCTCCGGTAGAATTGAA 360
Query 376 GAGGCGATTGAGGTTTTCTTCAAAATCCCTAATTTCAGGTGCGTGCCTTCTGCTTACACG 435
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGGCTATTGATGTTTTCTTCAAAATCCCTAATTTCAGGTGCGTGCCTTCTGCTTACACG 420
Query 436 CTCAATGCTTTGCTCTTAGTTCTTGTGAGAAAAAGACAGAGTCTTGAATTGGTTCCTGAG 495
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 CTCAATGCTTTGCTCTTAGTTCTTGTGAGAAAAAGACAGAGTCTTGAATTGGTGCCTGAG 480
Query 496 ATTTTGGTGAAAGCTTGTAGAATGGGTGTTAGGTTAGAGGAATCTACTTTCGGGATATTG 555
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTTTAGTGAAAGCTAGTAGAATGGGTGTTAGGTTAGAGGAATCTACTTTCGGGATATTG 540
Query 556 ATCGATGCGCTTTGTAGAATAGGTGAGGTAGATTGTGCTACTGAGTTAGTGAGATACATG 615
||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 541 ATCAATGCTCTTTGTAGAATCGGTGAGGTTGATTGTGCTACTGAGTTAGTGAGATACATG 600
Query 616 AGTCAGGATAGTGTTATTGTTGATCCAAGATTATACTCTCGGTTACTGAGTTCTGTATGT 675
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||
Sbjct 601 AGTCAGGATAGTGTTATTGTTGATCCAAGATTATACTCTCTGTTGTTGAGTTCTGTTTGT 660
Query 676 AAACACAAGGATTCGTCATGTTTCGATGTAATTGGATATTTGGAAGATCTGCGAAAGACT 735
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 661 AAACACAAGGATTCGTCATGTTTTGATGTCATTGGATATTTGGAAGATCTGCGGAAGACT 720
Query 736 CGGTTTTCGCCAGGTTTGCGGGATTATACAGTTGTGATGAGGTTCTTGGTGGAAGGAGGA 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CGGTTTTCGCCAGGTTTGCGGGATTATACAGTTGTGATGAGGTTCTTGGTGGAAGGAGGA 780
Query 796 AGGGGGAAAGAAGTTGTAAGTGTACTGAATCAGATGAAATGTGACAGAGTAGAGCCTGAT 855
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 781 AGGGGAAAAGAAGTTGTAAGTGTACTGAATCAGATGAAATGTGACAGAGTAGATCCCGAT 840
Query 856 CTTGTTTGTTATACAATCGTGTTGCAAGGCGTTATTGCGGATGAGGATTACCCGAAAGCA 915
||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 841 GTTGTTTGTTATACTATTGTGTTGCAAGGCGTTATTGCAGATGAGGATTACCCGAAAGCA 900
Query 916 GACAAGTTGTTTGATGAGTTGCTCTTGTTAGGTTTGGCTCCTGATGTTTATACCTATAAT 975
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 901 GACAAGTTGTTTGATGAGTTACTCTTGTTAGGTTTGGATCCTGATGTTTATACCTATAAT 960
Query 976 GTGTATATCAATGGGTTATGCAAGCAGAACGATATTGAAGGCGCC-TTAAAGATGATGTC 1034
||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||
Sbjct 961 GTGTATATCAATGGGTTATGCAAGCAGAACGATATCGAAGGCGCTATTAA-GATGATGTC 1019
Query 1035 TTCAATGAACAAGCTAGGTTCTGAGCCTAATGTAGTTACATACAATATATTGATCAA-GG 1093
|||||||||||||||||||||||||||||||||||||||||||||| || |||| || ||
Sbjct 1020 TTCAATGAACAAGCTAGGTTCTGAGCCTAATGTAGTTACATACAATGTAGTGATAAAAGG 1079
Query 1094 CATTGGTAAAAGCTGGAGATCTGAGTCGAGCTAAGACTCTATGGAAAGAGATGGAGACGA 1153
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1080 -ATTGGTTAAAGCTGGAGATCTTAGTCGAGCTAAGACTCTATGGAAAGAGATGGAGATGA 1138
Query 1154 ATGGAGTTAACCGGAACAGCCACACATTTGATATTATGATTAGTGCATATATTGAGGTAG 1213
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1139 ATGGAGTTAACCGGAACAGCCACACATATGATATTATGATTAGTGCATATATTGAGGTAG 1198
Query 1214 ACGAGGTTGTTTGTGCTCATGGTTTATTGGAAGAAGCATTTAACATGAACGTGTTCGTTA 1273
||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 1199 ACGAGATTGTTTGTGCTCAAGGTTTATTGGAAGAAGCATTTAACATGAACTTGTTTGTTA 1258
Query 1274 AGAGTTCGAGAATTGAGGAAGTCATTAGCAGATTATGTGAGAAAGGTTTGATGGATCAAG 1333
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1259 AGAGTTCAAGAATTGAGGAAGTCATTAGCAGGTTATGTGAGAAAGGTTTGATGGATAAAG 1318
Query 1334 CAGTCGAACTTTTAGCACACCTGGTTTAAGCAATGTGGAGCATCTCTAAATAGTTGTAAA 1393
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1319 CAGTCGAACTTTTAGCACACCTGGTTTAAGCAATGTGGAGCAACTCTAAA-AGTTGTAAA 1377
Query 1394 ATTGATGTATTTGGTCTTATTGATGATTGTTAGAAC 1429
|||||||| |||||||||||| ||||| ||||||||
Sbjct 1378 ATTGATGTGTTTGGTCTTATTAATGATAGTTAGAAC 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54507140595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5