BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38430.1
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345626 jgi|Araly1|345626|fgenesh1_pg.C_scaffold_4001968 872 0.0
Ahg345623 jgi|Araly1|345623|fgenesh1_pg.C_scaffold_4001965 597 6e-170
> Ahg345626 jgi|Araly1|345626|fgenesh1_pg.C_scaffold_4001968
Length=1101
Score = 872 bits (472), Expect = 0.0
Identities = 585/637 (92%), Gaps = 18/637 (3%)
Strand=Plus/Plus
Query 71 ATGTCTTATATTCCACCACATAAGAGGCATTCGAAGGATCCGACAAAGCCTACCCCTGTT 130
||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||||
Sbjct 1 ATGTCATATATTCCACCACATAAGAGGCATTCGAAGGATCCGGCAAAACCAACCCCTGTT 60
Query 131 CCAGATTCTCTTGTTACAAAATTCAAGAAGAACCTTGACTTTAAGAGTAGCACTAGCAGT 190
||||||||||||||||||||||||||||| ||| | |||||| | || || |||||||
Sbjct 61 CCAGATTCTCTTGTTACAAAATTCAAGAAAAACGTCGACTTT-A-AG-AG---TAGCAGT 114
Query 191 GTTAAACGCAACAAGATTATCTATTCAGGAGATTCCATTTCCAAATGGTTTCTTGTTGGT 250
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 GATAAACGCAACAAGATTATCTATTCAGGAGATTCCATTTCCAAATGGTTTCTTGTTGGT 174
Query 251 TCAAATGGAATTGAGGACGATGTT-CCTTCGTATGTTAAGTTTGTGCCCTTGTCCTCAGA 309
||||||||||| ||||| || ||| ||||||| ||||||| |||||||||||||||| ||
Sbjct 175 TCAAATGGAATCGAGGATGA-GTTTCCTTCGTTTGTTAAGCTTGTGCCCTTGTCCTCTGA 233
Query 310 TTCTGTCGAGTGTAGAAAAGGAGAAAAGCCTTCAATACTGATGAACAACAATGTCCAAAA 369
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TTCTGTCGAGTGCAGAAAAGGAGAAAAGCCTTCAATACTGATGAACAACAATGTCCAAAA 293
Query 370 TG-T---G--AATATGAATATTGGAGAGAGGA-AGGATGAGAGAACTCAGTGGCTATTAG 422
|| | | |||||||||||||||| ||| | || ||||||||||||||||||||||||
Sbjct 294 TGATTTAGTGAATATGAATATTGGAGGGAGCATAG-ATGAGAGAACTCAGTGGCTATTAG 352
Query 423 TAGCTGAGAAGGTT-ATGGAGGATCTTGTGTTGGCATATGAGCGAGTTAAGACTGAAATG 481
|||||||||||||| | |||||||||| |||||||||||||||||| |||||||||||||
Sbjct 353 TAGCTGAGAAGGTTGA-GGAGGATCTTTTGTTGGCATATGAGCGAGCTAAGACTGAAATG 411
Query 482 AAGGAGCATCATCATGTATCGAGACTGGTTGCTCGGTTTGGTAAAATTTTCTTCTATGGG 541
||||||||||||||||| |||| |||||||||||| |||||||||||||||||| |||
Sbjct 412 GGGGAGCATCATCATGTATTGAGATTGGTTGCTCGGTCTGGTAAAATTTTCTTCTACGGG 471
Query 542 AGTCAAGCTGGTCCTGTGGCTGAATGTTCACTAAAAAACTTGAATAAGATGTTCTCTACT 601
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 472 AGTCAAGCTGGTCCTGTGGCTGAATGTTCACTAAATAACTTGAATAAGATGTTCTCTACG 531
Query 602 GATCTCCCAATGTCTTACTTACAACACATAAAATCTAATGTTGTACCAAGCCATGGATTC 661
||| ||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 532 GATGTCCCAATGTCTAACTTACAACACATCAAATCTAAGGTTGTACCAAGCCATGGATTC 591
Query 662 TCTATTGATAAGGAGAAGGAAACATACACTGTGAAGG 698
|||||||| ||| ||||||||||||||||||||||
Sbjct 592 GCTATTGATCTGGAAAAGGAAACATACACTGTGAAGG 628
Score = 590 bits (319), Expect = 1e-167
Identities = 419/467 (90%), Gaps = 8/467 (2%)
Strand=Plus/Plus
Query 785 CTTAATCCTGTAAGGCATTTGGTTGTTGATGTGTCATGCATTGATAAGAATCTCGACATG 844
|||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||
Sbjct 634 CTTAATCCTGTAAGGCATATGGTTGTTGATGTGTCATGCATCGATAAGAATCTTGACATG 693
Query 845 AGACTAACGCTCACCGCTAAGAGGGAAATAACGTA-TCTCAGTGATAAAGAGATAGGTGA 903
||||| | |||| | || || ||| |||| ||| | ||| | || ||||||| | | |
Sbjct 694 AGACTGATGCTCGCTGCCAAAAGGAAAATGACG-ACTCTTACAGAGAAAGAGACAAGCAA 752
Query 904 CATTAAAGCGCTATTGGAATCAGCAACTGTTGATCCAAATGTAAAAGGCGGTTTAAGGTG 963
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 753 CATTAAAGCGCTATTGGATTCAGCAACTGTTGATCCGAACGTAAAAGGCGGTTTAAGGTG 812
Query 964 GCCGTTTGGTAAAGCTTTATCTGAAGATGGATACAAAGAATTTGAAGTTTGTCACGTTAG 1023
||| ||||||||||||| |||||| |||||||||| || |||||||||||||||||||||
Sbjct 813 GCCATTTGGTAAAGCTTCATCTGAGGATGGATACAGAGTATTTGAAGTTTGTCACGTTAG 872
Query 1024 AGCTACTATCTACAAAAATAAAACTCTAAGGCTTAGGGTAAGAGAGACTGATAGATTCAA 1083
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 873 AGCTACTATCTACAAAAATCAAACTCTAAGGCTTAGGGTAAGAGAGACTGATAGATTCAA 932
Query 1084 TGAGACGACTGGAACAGGGGAAACCAAGAGGGAGGTGAGTTTGACGCTTAAAGACATCGA 1143
||||| || |||||||||||||| |||||||||||||| | ||| ||||||||| | |
Sbjct 933 TGAGAGGATTGGAACAGGGGAAATCAAGAGGGAGGTGACTCTGATACTTAAAGACCTA-A 991
Query 1144 CACTAAAA-T-ACAGGAGCAGAACACTGAGAGGGGTTG-TGTTTTGGAGATGCTACGAGA 1200
|||| || | ||||||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct 992 -ACTATAAGTTACAGGAGCAGAACGCTGAGAGGGGT-GATGTTTTGGAGATGCTACGAGA 1049
Query 1201 TGCTCTTGGAACTATATGGGACTTCTTGCATTGCGATGCCTATCTTA 1247
| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 TACTCTTGGAACTATATGGGACTTCTTGCATTGCGATGCCTATCTTA 1096
> Ahg345623 jgi|Araly1|345623|fgenesh1_pg.C_scaffold_4001965
Length=690
Score = 597 bits (323), Expect = 6e-170
Identities = 389/421 (92%), Gaps = 4/421 (1%)
Strand=Plus/Plus
Query 830 AAGAATCTCGACATGAGACTAACGCTCA-CCGCTAAGAGGGAAATAACGTATCTCAGTGA 888
||| |||||||||||||||| | ||| | ||||||||||| |||||||||||||||| ||
Sbjct 268 AAGGATCTCGACATGAGACTGATGCT-AGCCGCTAAGAGGAAAATAACGTATCTCAGCGA 326
Query 889 TAAAGAGATAGGTGACATTAAAGCGCTATTGGAATCAGCAACTGTTGATCCAAATGTAAA 948
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 327 GAAAGAGATAGGTGACATTAAAGCGCTATTGGAATCAGCGACTGTTGATCCAAATGTAAA 386
Query 949 AGGCGGTTTAAGGTGGCCGTTTGGTAAAGCTTTATCTGAAGATGGATACAAAGAATTTGA 1008
||||||||||| |||||||||||||||||||||| || |||||||||||| |||||||||
Sbjct 387 AGGCGGTTTAAAGTGGCCGTTTGGTAAAGCTTTAACTAAAGATGGATACAGAGAATTTGA 446
Query 1009 AGTTTGTCACGTTAGAGCTACTATCTACAAAAATAAAACTCTAAGGCTTAGGGTAAGAGA 1068
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 447 AGTTTGTCACGTTAGAGCTACTATCTACAAAAACAAAACTCTAAGGCTTAGGGTTAGAGA 506
Query 1069 GACTGATAGATTCAATGAGACGACTGGAACAGGGGAAACCAAGAGGGAGGTGAGTTTGAC 1128
|||||||||||||||||||| || |||||||||||||| |||||||||||||||| ||||
Sbjct 507 GACTGATAGATTCAATGAGAGGAGTGGAACAGGGGAAATCAAGAGGGAGGTGAGTCTGAC 566
Query 1129 GCTTAAAGACATCGACACTAAAATACAGGAGCAGAACACTGA-GAGGGGTTGTGTTTTGG 1187
||||||||||||||||||||| ||||||| ||||||| || ||||| ||||||| |||
Sbjct 567 GCTTAAAGACATCGACACTAAGTTACAGGAACAGAACA-TGGTGAGGGCTTGTGTTGTGG 625
Query 1188 AGATGCTACGAGATGCTCTTGGAACTATATGGGACTTCTTGCATTGCGATGCCTATCTTA 1247
| ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| |||
Sbjct 626 AAATGCTTCGAGATGCTCTTGGAACCATATGGGACTTCTTGCATTGCGATGCATATATTA 685
Query 1248 C 1248
|
Sbjct 686 C 686
Score = 161 bits (87), Expect = 9e-39
Identities = 154/184 (84%), Gaps = 13/184 (7%)
Strand=Plus/Plus
Query 71 ATGTCTTATATTCCACCACATAAGAGGCATTCGAAGGATCCGACAAAG-CCTA-CCCCTG 128
|||||||||||||| ||||||||| | |||| | | ||||| | || || | ||||||
Sbjct 1 ATGTCTTATATTCCTCCACATAAGCGACATTTG-A--ATCCGGC-TAGACC-AGCCCCTG 55
Query 129 TTCCAGATTCTCTTGTTACAAAATTCAAGAAGAACCTTGACTTTAAGAGTAGCACTAGCA 188
|||||||||||||| || | | ||||||||| ||||| || || ||||||| | | |
Sbjct 56 TTCCAGATTCTCTTATTCCCACATTCAAGAAAAACCTCGAATTCAAGAGTA--A--A--A 109
Query 189 GTGTTAAACGCAACAAGATTATCTATTCAGGAGATTCCATTTCCAAATGGTTTCTTGTTG 248
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 ATGATAAACGCAACAATATTATCTATTCAGGAGATTCCATTTCCAAATGGTTTCTTGTTG 169
Query 249 GTTC 252
||||
Sbjct 170 GTTC 173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5