BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G38450.1

Length=691
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg345628 jgi|Araly1|345628|fgenesh1_pg.C_scaffold_4001970           643    0.0  


> Ahg345628 jgi|Araly1|345628|fgenesh1_pg.C_scaffold_4001970
Length=420

 Score =  643 bits (348),  Expect = 0.0
 Identities = 394/415 (95%), Gaps = 7/415 (2%)
 Strand=Plus/Plus

Query  42   ATGGGAAAATCGATTCCCGTCAAAACAGGGCTAAGAGGAGCTTCCGCAGCAGTAGCTGGA  101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGAAAATCGATTCCCGTCAAAACAGGGCTAAGAGGAGCTTCCGCAGCAGTAGCTGGA  60

Query  102  TTCATCAAATCCTCAAAACCGATCCGACCCATTTC--C-TCCATGGACAGTTCCGACAAA  158
            |||||||||||||||||||||||||||||||||||  | |||||||||||| ||||||||
Sbjct  61   TTCATCAAATCCTCAAAACCGATCCGACCCATTTCTTCCTCCATGGACAGTCCCGACAAA  120

Query  159  GATTCATCATCCACCACCACCACCAGCGAAACTA-CACGACG-TTTCGTTCCGCTTTCAT  216
            ||||||||| ||||||||||||||| || ||||| | || || ||| ||||| ||||| |
Sbjct  121  GATTCATCAGCCACCACCACCACCACCGGAACTAGC-CGCCGCTTT-GTTCCTCTTTCCT  178

Query  217  CGGTGGTTTCTGATTGTGCGAAGCGGTGGTTTAAAGACACTCTTGAGGAAGCTAAAGCTG  276
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  179  CGGTGGTTTCTGATTGTGCGAAGCGGTGGTTCAAAGACACTCTTGAGGAAGCTAAAGCTG  238

Query  277  GGAACATCACTATGCAGGTTTTGTTAGGTCAGATGTATTACTCTGGGTATGGAGTCCCTA  336
            |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  239  GGAACATCACTATGCAGGTTTTGTTAGGTCAGATGTATTATTCTGGTTATGGAGTCCCTA  298

Query  337  AGGATGCTAGAAAGGGGAGACTTTGGATTACGAAAGCATCAAGAGTTCGTTCTTCAGTGT  396
            ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct  299  AGGATGCTAAAAAGGGGAGACTTTGGATTACGAAAGCATCAAGAGTTCGATCTTCAGTAT  358

Query  397  GGAAAGTGATAGATAAACGACCAGGTTACAACGCAAGTGATTCAGATTCAGAGTC  451
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  359  GGAAAGTGAAAGATAAACGACCAGGTTACAACGCAAGTGATTCAGATTCAGAGTC  413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25389862722


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5