BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38460.1
Length=1877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901763 jgi|Araly1|901763|Al_scaffold_0004_2413 2462 0.0
Ahg487136 jgi|Araly1|487136|fgenesh2_kg.6__270__AT5G03570.1 1234 0.0
> Ahg901763 jgi|Araly1|901763|Al_scaffold_0004_2413
Length=1578
Score = 2462 bits (1333), Expect = 0.0
Identities = 1502/1583 (95%), Gaps = 13/1583 (1%)
Strand=Plus/Plus
Query 56 ATGGAGAATGAGACAGAATTGAGGGTTGTTCATC-AG--GAAG---AACAACAACGCGAA 109
||||||||||||||||||||||||| |||||||| || |||| |||||||||| |||
Sbjct 1 ATGGAGAATGAGACAGAATTGAGGGATGTTCATCAAGAAGAAGAACAACAACAACGTGAA 60
Query 110 GAAGGAGAAGATGAATCACAGCCACAAAACCCACCACCAGCCTTACGACGTCGTTTCGTG 169
||||||||||| ||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 61 GAAGGAGAAGAAGAAGCACAGCCACAAAACCCACCA-C--CCTTACGACGTCGTTTCGTG 117
Query 170 ATATATCTTTACGTTGGATATTTTCTTGCAAGATGGAGTGCCAGAACATGGGAATTCTCT 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ATATATCTTTACGTTGGATATTTTCTTGCAAGATGGAGTGCCAGAACATGGGAATTCTCT 177
Query 230 GTTGCATTGTATATGATCCACTTGTGGCCAAACTCTCTGCTTCTCGCTGCCATTTATGGT 289
||||| |||||||||||||||| ||||||||||||||||||||| || || |||||||||
Sbjct 178 GTTGCTTTGTATATGATCCACTGGTGGCCAAACTCTCTGCTTCTAGCCGCGATTTATGGT 237
Query 290 GCTATAGAATCTGGTTCTACTGCAATCTTTGGTCCCATTGTGGGGCAATGGGTCGAGGGA 349
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 238 GCTATAGAATCTGGTTCTACTGCAATTTTTGGTCCCATTGTGGGGCAATGGGTCGAGGGA 297
Query 350 ATGGACTACGTTAAAGTTCTTAGACTCTGGCTCCTGTTCCAGAACCTCTCCTACACTATT 409
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATGGACTATGTTAAAGTTCTCAGACTCTGGCTCCTGTTCCAGAACCTCTCCTACACTATT 357
Query 410 GCTGGTGGTGCAGTCATCAAGTTGTTGCTAGTTTCTGATCTTAAGTCCCGGAATCTCCCG 469
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 358 GCTGGTGGTGCAGTCATCAAGTTGTTGCTAGTTTCCGATCTTAAGTCCCGGAATCTCGCG 417
Query 470 GTGTTTGCAATCTTGATTGTGTTAACGAATCTTGCTGGCGCCATTGGAGTTCTTTCGACT 529
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 418 GTGTTTGCAATCTTGGTTGTGTTAACGAATGTTGCTGGCGCCATTGGAGTTCTTTCGACT 477
Query 530 CTTGCTGGCACCATTCTGATCGAACGAGACTGGGCTGTGGTTATGTCTGAAGGTCATCCA 589
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 478 CTTGCTGGCACCATTCTGATCGAACGAGACTGGGCTGTGGTTATGTCAGAAGGTCATCCA 537
Query 590 CCAGCAGTATTGACAAAAATGAATTCTGTCATTAGAGGCATTGATTTGAGCTCCAAGCTA 649
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 538 CCAGCAGTATTGACAAGAATGAATTCTGTCATTAGGGGCATTGATTTGAGCTCCAAGTTA 597
Query 650 CTGTCTCCAGTCATTACTGGTCTGATCATCAGTTTTGTCTCACTTAAGGCTTCAGCGATC 709
| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 598 TTTTCTCCAGTCATCACTGGTCTGATCATCAGTTTTGTCTCACTTAAGGCGTCAGCGATA 657
Query 710 ACTTTTGCAGCTTGGGCTACTATAACAGCTTGGGTTGAATATTGGCTCTTCATTTCTGTG 769
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 658 ACTTTTGCAGCTTGGGCCACTATAACAGCTTGGGTTGAATATTGGCTCTTCATTTCAGTT 717
Query 770 TATAGCGGTGTTCCTGCAATAACACGAAGCAATGAGAGACGGATCTTGCGTTCCCGGACA 829
||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 718 TATAGTGGTGTTCCTGCGATAGCACGAAGCAATGAGAGACGGATCTTGCGTTCCCGGACA 777
Query 830 AAGCAAGTAGAAGGAAGAGATGCACCTGTTTCTGTTTCTATTGTTCCGGGAACAGAGGAG 889
|||||||||||||||| |||||||||||||||||| |||| || ||||||||||||||||
Sbjct 778 AAGCAAGTAGAAGGAACAGATGCACCTGTTTCTGTATCTAATGCTCCGGGAACAGAGGAG 837
Query 890 GGTTATACTGGAAACCCTCCGTCTAGAACCGGAATCTTGG-TGATACTGGATAGAATGTC 948
||| |||||||| ||| |||| ||||||||||||| || ||| || ||||| | ||
Sbjct 838 AGTTCTACTGGAACCCCACCGTGTAGAACCGGAATC-CGGAAGATTCTTAATAGAGTATC 896
Query 949 CAAGTCCTCTTTTGTTGGCGCATGGAGAATTTATTTCAATCAAGAAGTTGTCCTCCCCGG 1008
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 897 CAAGTCCTCTTTTGTTGGCGCATGGAGAATATATTTCAATCAAGAAGTTGTACTCCCCGG 956
Query 1009 GGTTTCTCTAGCTCTCTTGTTCTTCACCGTCCTCAGCTTTGGAACATTGATGACGGCTAC 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GGTTTCTCTAGCTCTCTTGTTCTTCACCGTCCTCAGCTTTGGAACATTGATGACGGCTAC 1016
Query 1069 ATTGCAGTGGGAAGGTATACCTACATATATCATCGGTATAGGCAGGGGAATAAGTGCAAC 1128
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 ATTGCAGTGGGAAGGGATACCTACATATATCATCGGTATAGGCAGGGGAATAAGTGCAAC 1076
Query 1129 GGTTGGACTAGCGGCTACATTAGTGTATCCGCTAATGCAATCGCGTCTCTCAACTCTGAG 1188
|||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 1077 GGTTGGACTAACGGCTACATTAGTGTATCCGCTAATGCAATCCCGTCTGTCAACGCTGAG 1136
Query 1189 AACCGGCCTCTGGTCCTTCTGGTCTCAGTGGAGCTGCCTTTTGGTCTGCGTTGGATCGAT 1248
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AACCGGTCTCTGGTCCTTCTGGTCTCAGTGGAGCTGCCTTTTGGTCTGCGTTGGATCGAT 1196
Query 1249 TTGGGTTAAAAAGGATAAAATAGCATCTTACATGCTAATGGCTGGAGTTGCTGCTTCAAG 1308
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 ATGGGTTAAAAAGGATAAAATAGCATCTTACATGCTAATGGCTGGAGTTGCTGCTTCAAG 1256
Query 1309 GCTTGGCTTGTGGATGTTTGATCTTGCCGTCATCCAACAAATGCAGGATCTTGTTTCAGA 1368
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1257 GCTTGGCTTGTGGATGTTTGATCTTTCCGTCATCCAACAAATGCAGGATCTTGTTTCAGA 1316
Query 1369 ATCCGACCGTTGTGTGGTTGGAGGTGTTCAGAACTCACTGCAATCGGCTCTTGACTTGAT 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 ATCCGACCGTTGTGTGGTTGGAGGTGTTCAGAACTCACTGCAATCGGCTCTTGACTTGAT 1376
Query 1429 GGCATATCTTTTAGGTATCATTGTCTCCAATCCAAAGGATTTTTGGATATTGACGTTGAT 1488
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1377 GGCATATCTATTAGGTATCATTGTCTCCAATCCAAAGGATTTCTGGATATTGACGTTGAT 1436
Query 1489 CTCATTCTCCACAGTATCGTTGGCAGGAATGCTCTATACAATTCACCTCTACCGCATAAG 1548
|||||||||||| || ||||| ||||||||||||||||||||||| |||||||| || ||
Sbjct 1437 CTCATTCTCCACTGTGTCGTTAGCAGGAATGCTCTATACAATTCATCTCTACCGGATTAG 1496
Query 1549 AAACCATATTTTTCATCTT-GAGAAGATTCCTTTGTTGAACAAATGTATATTCAAGTTGC 1607
|||||| |||||||| ||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1497 AAACCACATTTTTCA-CTTTGAGAAGATTCCTTTGTTGAACAAATGTTTATTCAAGTTGC 1555
Query 1608 TCCCTTCTCGTGGAAACGTGTAA 1630
||||||||||||||||| |||||
Sbjct 1556 TCCCTTCTCGTGGAAACATGTAA 1578
> Ahg487136 jgi|Araly1|487136|fgenesh2_kg.6__270__AT5G03570.1
Length=1572
Score = 1234 bits (668), Expect = 0.0
Identities = 1183/1428 (83%), Gaps = 50/1428 (4%)
Strand=Plus/Plus
Query 188 TATTTTCTTGCAAGATGGAGTGCCAGAACATGGGAATTCTCTGTTGCAT-TGTATATGAT 246
||||||||||| ||||| | || ||||| ||||||||||||||||| | ||||||||||
Sbjct 150 TATTTTCTTGCTCGATGGGGAGCAAGAACTTGGGAATTCTCTGTTGC-TCTGTATATGAT 208
Query 247 CCACTTGTGGCCAAACTCTCTGCTTCTCGCTGCCATTTATGGTGCTATAGAATCTGGTTC 306
|| | ||||||||||||||| ||||| |||| || || |||| | ||||||| |||||
Sbjct 209 TTACCTCTGGCCAAACTCTCTGTTTCTCACTGCAATGTACGGTGTTGTAGAATCCGGTTC 268
Query 307 TACTGCAATCTTTGGTCCCATTGTGGGGC-AATGGGTCGAGGGAATGGA-CTACGTTAAA 364
| | || || |||||||||||||| || | ||| | | || ||||| || ||| ||||||
Sbjct 269 TGCCGCTATTTTTGGTCCCATTGTAGGCCAAAT-GATTGATGGAAT-GAGCTATGTTAAA 326
Query 365 GTTCTTAGACTCTGGCTCCTGT-TC-CAGAACCTCTCCTACACTATTGCTGGTGGTGCAG 422
||||||||||||||||| ||| | || |||||||||| || | |||| ||||||||||
Sbjct 327 GTTCTTAGACTCTGGCT--TGTAACTCAAAACCTCTCCTTCATTGTTGCGGGTGGTGCAG 384
Query 423 TCATCAAGTTG-TTGCTAGTTTCTGATCTTAAGTCCCGGAATCTCCCGGTGTTT-GCAAT 480
|| | ||| || |||||| ||||||||| ||| | ||| |||| || ||| |||||
Sbjct 385 TCGTTGCTTTGCTT-CTAGTTCCTGATCTTAGGTCTCATAATTTCCCTGT-TTTCGCAAT 442
Query 481 CTTGATTGTGTTAACGAATCTTGCTGGCGCCATTGGAGTTCTTTCGACTCTTGCTGGCAC 540
||| | ||||| || ||| || |||||||||||||||| || || |||||||| |||||
Sbjct 443 ATTGGTCGTGTTGACTAATGTTTCTGGCGCCATTGGAGTACTCTCTACTCTTGCAGGCAC 502
Query 541 CATTCTGATCGAACGAGACTGGGCTGTGGTTATGTCTGAAGGTCATCCACCAGCAGTATT 600
|||| |||||||||||||||||| |||||||||||| ||||||||| ||||| |||| ||
Sbjct 503 CATTTTGATCGAACGAGACTGGGTTGTGGTTATGTCGGAAGGTCATTCACCAACAGTTTT 562
Query 601 GACAAAAATGAATTCTGTCATTAGAGGCATTGATTTGAGCTCCAAGCTACTGTCTCCAGT 660
|||| |||||| ||||| || ||||||||||| |||||||| |||||||||||||| ||
Sbjct 563 AACAAGAATGAACTCTGTTATCAGAGGCATTGACTTGAGCTCGAAGCTACTGTCTCCGGT 622
Query 661 CATTACTGGTCTGATCATCAGTTTTGTCTCACTTAAGGCTTCAGCGATCACTTTTGCAGC 720
|| |||||| ||||||| || ||||| || ||||| || ||||| || || ||||||||
Sbjct 623 TATAACTGGTTTGATCATTAGCTTTGTATCTCTTAAAGCATCAGCTATAACATTTGCAGC 682
Query 721 TTGGGCTACTATAACAGCT-TGGGTTGAATATTGGCTCTTCATTTCTGTGTATAGCGGTG 779
||||||||||||||| | | |||||||| ||||||||||| || |||||||||| |||||
Sbjct 683 TTGGGCTACTATAACCG-TGTGGGTTGAGTATTGGCTCTTTATCTCTGTGTATAACGGTG 741
Query 780 TTCCTGCAATAACACGAAGCAATGAGAGACGGATCTT--GCGTTCCCGGACAA-AGCAAG 836
||||||| ||| | |||| |||||||| ||| || | ||| | ||| |||||
Sbjct 742 TTCCTGCGATAGTTCAAAGCGATGAGAGAAGGAGATTAAG-GTTGTC--TCAATCGCAAG 798
Query 837 TAGAAG-GA-AGAGA-TGCACCT-G--TTTCTGTTTCTATTGTTCCGGGAACAGAGGAGG 890
|||| || ||| | |||| || | ||| |||| || || || | | | |||||||
Sbjct 799 GGGAAGAGACAGATAGTGCATCTAGTTTTTATGTTCCTCTT-TTACACG-A-AGAGGAGT 855
Query 891 GTTATACTGGAAACCCTCCGTCTAGAACCGGAATC-TTGGTGATACTGGATAGAATGTCC 949
||||| ||||| | | ||||| ||||||| || | ||| || || ||||| ||
Sbjct 856 CTTATA--GGAAA-TCGCAAAGTAGAAGCGGAATCTTTAG-GATTCTTGAGAGAATCTCT 911
Query 950 AAGTCCTCTTTTGTTGGCGCATGGA-GAATTTATTTCAATCAAGAAG-TTGTCCTCCCCG 1007
|||| ||||||||| ||||||||| ||| |||| ||||||||| || |||| ||||| |
Sbjct 912 GAGTCTTCTTTTGTTAGCGCATGGAGGAA-TTATCTCAATCAAG-AGATTGTGCTCCCTG 969
Query 1008 GGGTTTCTCTAGCTCTCTTGTTCTTCACCGTCCTCAGCTTTGGAACATTGATGACGGCTA 1067
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 970 GAGTTGCTCTAGCTCTCTTGTTCTTCACCGTCCTCAGCTTTGGAACATTGATGACGGCGA 1029
Query 1068 CATTGCAGTGGGAAGGTATACCTACATATATCATCGGTATAGGCAGGGGAATAAGTGCAA 1127
||||| ||||| |||| |||||||| |||||||| ||||||||||| ||||| ||||||
Sbjct 1030 CATTGGAGTGGAAAGGGATACCTACTTATATCATTGGTATAGGCAGAGGAATCAGTGCAG 1089
Query 1128 CG-GTTGGACTAGCGGCTACA-TTAGTGTATCCGCTAATGCAATCGCGTCTCTCAACTCT 1185
| ||||||||||| ||||| || |||| || || |||||||| ||| ||||| ||||
Sbjct 1090 -GTGTTGGACTAGCTGCTACCGTTT-TGTACCCTCTCATGCAATCCCGTATCTCACCTCT 1147
Query 1186 GAGAACCGGCCTCTGGTCCTTCTGGTCTCAGTGGAGCTGCCTTTTGGTCTGCGTTGGATC 1245
|||||||| ||||||||||| ||||||||||||| ||| |||||||| || ||||||||
Sbjct 1148 CAGAACCGGACTCTGGTCCTTTTGGTCTCAGTGGACCTGTCTTTTGGTGTGTGTTGGATC 1207
Query 1246 GATTTGGGTTAAAAAGGATAAAATAGCATCTTACATGCTAATGGCTGGAGTTGCTGCTTC 1305
||||||||| | ||||| ||||||||||| |||||||| |||||||| |||||||||||
Sbjct 1208 AATTTGGGTTGAGAAGGAGAAAATAGCATCATACATGCTCATGGCTGGTGTTGCTGCTTC 1267
Query 1306 AAGGCTTGGCTTGTGGATGTTTGATCTTGCCGTCATCCAACAAATGCAGGATCTTGTTTC 1365
|||||||| ||||||||||| |||||||| || |||||||||||||||||||||||| |
Sbjct 1268 TAGGCTTGGTTTGTGGATGTTCGATCTTGCGGTAATCCAACAAATGCAGGATCTTGTTCC 1327
Query 1366 AGAATCCGACCGTTGTGTGGTTGGAGGTGTTCAGAACTCACTGCAATCGGCTCTTGACTT 1425
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||
Sbjct 1328 GGAATCCGACCGTTGTGTGGTTGGAGGTGTTCAGAACTCATTGCAAGCGGCTCTTGCCTT 1387
Query 1426 GATGGCATA-TCTTTTAGGTATCATTGTCTCCAATCCAAAGGATTTTTGGATATTGACGT 1484
|||||| || |||||| ||||||||||| || ||||| |||||||||||||| |||||||
Sbjct 1388 GATGGC-TAATCTTTTGGGTATCATTGTATCTAATCCTAAGGATTTTTGGATGTTGACGT 1446
Query 1485 TGATCTCATTCTCC-ACAGTATCGTTGGCAGGAATGCTCTATACAATTCACCTCTACCGC 1543
|||||||||| | | || || ||||| || |||||||||||||| ||||||||||||||
Sbjct 1447 TGATCTCATT-TGCTACGGTTTCGTTTGCCGGAATGCTCTATACGATTCACCTCTACCGT 1505
Query 1544 ATAAGAAACCATATTTTTCATCTTG-AGAAGATTCCTTTGTTGAACAA 1590
|| |||| ||| | ||||| |||| |||||||||| || ||||||||
Sbjct 1506 ATTCGAAAACATCTATTTCA-CTTGGAGAAGATTCCCTTATTGAACAA 1552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70505043495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5