BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G38465.1

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482856 jgi|Araly1|482856|fgenesh2_kg.4__1916__AT2G38465.1         518    2e-146


> Ahg482856 jgi|Araly1|482856|fgenesh2_kg.4__1916__AT2G38465.1
Length=404

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 356/391 (91%), Gaps = 11/391 (3%)
 Strand=Plus/Plus

Query  38   AAAGTGAGATATTTCCTAGTCTTGC-TTTCAAGTT--TCAAG----CAATCTA--TCTAT  88
            ||||||||||||||| ||| ||| | |||||||||   ||||    |  ||||  |||| 
Sbjct  16   AAAGTGAGATATTTCGTAGCCTTACTTTTCAAGTTACACAAGTATTCTTTCTATCTCTAC  75

Query  89   CTCGAAAAAGCAGCGATGCAAGACGCCGAGACATCACGACAGCCGGCGAAGTCTTTGTCC  148
            ||||||| |||| |||||||||| ||||||||||||| || |||| ||||||||||| | 
Sbjct  76   CTCGAAACAGCAACGATGCAAGAAGCCGAGACATCACAACGGCCGTCGAAGTCTTTGACG  135

Query  149  GATCGAGTGAAGACTAACTGTTTATCCATGGCAGTAACATGCCAGGAAGGGTTTAGCTAT  208
            |||||||||||||| ||||||||||||||||||||  | ||||||||||| |||||||||
Sbjct  136  GATCGAGTGAAGACGAACTGTTTATCCATGGCAGTCTCGTGCCAGGAAGGTTTTAGCTAT  195

Query  209  GTCAAAGCCTTTTTTGTTGGCCAGACAAAGAGATTGACGGCAAAGAACGAGAAGGAAGCT  268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  196  GTCAAAGCCTTTTTTGTTGGCCAGACAAAGAGATTGACGGCAAAGAACGAGAAGGAAGCT  255

Query  269  ACGGAGGCTCATCTAACGGAGACAAAAATGCAAGTTGACGCAACCGATGAAGCAGAGAAT  328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  256  ACGGAGGCTCATCTAACGGAGACAAAAATGCAAGTTGACGCAACCGATGAAGCAGAGAAT  315

Query  329  GCCAAGAAGAGACTTCATCAATCTTCTTAATGTTTCTTTATTAACATATAATAATGGAGT  388
            |||||||||||||||| |||||||||||| |||||||||||||||||||||||| | |||
Sbjct  316  GCCAAGAAGAGACTTCGTCAATCTTCTTAGTGTTTCTTTATTAACATATAATAA-G-AGT  373

Query  389  GTGTACTTTATTAAGCAAACACAAATATCTG  419
            || |||||||||||| |||||||||||||||
Sbjct  374  GTATACTTTATTAAGTAAACACAAATATCTG  404



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17704193296


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5