BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38470.1
Length=1902
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482857 jgi|Araly1|482857|fgenesh2_kg.4__1917__AT2G38470.1 2728 0.0
> Ahg482857 jgi|Araly1|482857|fgenesh2_kg.4__1917__AT2G38470.1
Length=1844
Score = 2728 bits (1477), Expect = 0.0
Identities = 1761/1888 (93%), Gaps = 59/1888 (3%)
Strand=Plus/Plus
Query 22 CCATCACTTCTCTCATTTTCTTCTTCTCCAAGCCC-C--C--C--TC-CTTTCTATATAT 73
|||||||||||||| |||||||||||| ||||||| | | | | ||||||||| ||
Sbjct 1 CCATCACTTCTCTCGTTTTCTTCTTCTTCAAGCCCTCTTCTTCAAACACTTTCTATAAAT 60
Query 74 ATCTGAAATTGGTCTTTTATAAAACAAACTTCCATTTTTCGTATGGCTG---CTTCTTTT 130
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 ATCTGAAATTGGTCTTTCATAAAACAAACTTCCATTTTTCGTATGGCTGCTTCTTCTTTT 120
Query 131 CTTACAATGGACAATAGCAGAACCAGACAAAACATGAATGGTTCTGC---TAATTGGTCA 187
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 CTTACAATGGACAATAGCAGAACCAGACAAAACATGAATGGTTCTGCTAATAATTGGTCA 180
Query 188 CAACAATCCGGAAGAACATCTACTTCCTCTTTGGAAGATCTTGAGATACCAAAGTTCAGA 247
|||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 181 CAACAATCCGGAAGAACATCAACTTCATCTTTGGAAGATCTTGAGATCCCAAAGTTCAGA 240
Query 248 tcttttgctccttcttcaatctctatctctccttctcttgtctctccttccacttgtttc 307
||||||||| | |||| ||| | | |||| | ||||||||||||||||||||
Sbjct 241 TCTTTTGCT-C--CTTC-ATC-C-A--------TCTC-TATCTCTCCTTCCACTTGTTTC 285
Query 308 agtccctctctttttctcGATTCCCCTGCTTTTGTCTCCTCCTCTGCTAACGTTCTAGCT 367
||||||||| |||| |||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 286 AGTCCCTCTGTTTTCCTCGATTCCCCTGCTTTTGTCTCCCCCTCTGCTAACGTTCTTGCT 345
Query 368 TCTCCAACCACAGGAGCTTTAATCACAAACGTAACTAACCAGAAAGGTATAAATGAAGGA 427
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 346 TCTCCAACCACAGGAGCTTTAATCACAAACGGAAGTAACCAGAAAGGTATAAATGAAGGA 405
Query 428 GACAAGAGCAACAACAACAACTTTAACTTATTCGATTTCTCATTCCACACACAATCATCA 487
|| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 406 GAGAAGAGCAACAACAACAACATTAACTTCTTCGATTTCTCATTCCACACACAATCATCA 465
Query 488 GGAGTTTCTGCTCCGACCacaactacaactacaactacaactacaacaacaacaaacaGT 547
|||||||||||||| | || | |||||||| | ||||| || |||||||||||||||
Sbjct 466 GGAGTTTCTGCTCC-A--AC--C-ACAACTAC-A--ACAACAACGACAACAACAAACAGT 516
Query 548 TCTATCTTTCAATCTCAGGAACAACAGAAGAAGAACCAGTCAGAACAATGGAGCCAAACC 607
|||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 517 TCTATCTTTCAACCTCAGGAACAACAGAAGAAGAACCAGTCAGAGCAATGGAACCAAACC 576
Query 608 GAGACTCGTCCAAACAATCAAGCTGTATCTTACAATGGAAGAGAGCAAAGGAAAGGAGAG 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 GAGACTCGTCCAAACAATCAAGCTGTATCTTACAATGGAAGAGAGCAAAGGAAAGGAGAG 636
Query 668 GATGGTTACAATTGGAGAAAGTACGGACAAAAACAGGTGAAAGGAAGTGAGAATCCTCGG 727
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 637 GATGGTTACAATTGGAGAAAGTACGGACAGAAACAGGTGAAAGGAAGTGAGAATCCTCGG 696
Query 728 AGTTACTATAAGTGTACTTTCCCTAATTGTCCAACGAAGAAGAAAGTGGAGAGATCTTTG 787
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 697 AGTTACTATAAGTGTACTTTCCCAAATTGTCCAACGAAGAAGAAAGTGGAGAGATCTTTG 756
Query 788 GAAGGTCAGATCACAGAGATTGTGTATAAAGGAAGCCACAACCATCCTAAACCTCAGTCT 847
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 757 GAAGGTCAGATCACAGAGATTGTGTATAAAGGAAGCCATAACCATCCTAAACCTCAGTCT 816
Query 848 ACTAGAAGATCTTCTTCGTCTTCTTCGACTTTTCATTCAGCTGTGTACAATGCCAGTTTG 907
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 817 ACTAGAAGATCTTCTTCGTCTTCTTCAACTTTTCATTCAGCTGTGTACAATGCCAGTTTG 876
Query 908 GATCATAATCGTCAAGCTTCTTCTGATCAGCCTAATTCCAATAATAGCTTTCATCAGTCT 967
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 877 GATCATAACCGTCAAGCTTCTTCTGATCAACCTAATTCCAATAATAGCTTTCATCAGTCT 936
Query 968 GATTCCTTTGGGATGCAACAAGAGGATAATACTACTTCTGATTCTGTTGGTGACGATGAG 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 GATTCCTTTGGGATGCAACAAGAGGATAATACTACTTCTGATTCTGTTGGTGACGATGAG 996
Query 1028 TTCGAACAAGGCTCATCGATTGTCAGCAGAGACGAAGAAGATTGTGGGAGTGAACCTGAA 1087
|| ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 997 TTTGAACAAGGCTCCTCGGTTGTCAGCAGAGAAGAAGAAGATTGTGGGAGTGAACCTGAA 1056
Query 1088 GCAAAGAGATGGAAAGGGGACAATGAAACAAATGGTGGGAATGGTGGTGGAAGCAAGACA 1147
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 1057 GCAAAGAGATGGAAAGGAGATAATGAAACAAATGGTGGGAATGGTGGCGGAAGCAAGACA 1116
Query 1148 GTGAGAGAGCCGAGAATCGTAGTGCAGACAACGAGTGATATTGACATTCTTGACGACGGT 1207
||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 1117 GTGAGAGAGCCAAGAATTGTCGTGCAGACAACGAGTGATATCGACATTCTTGACGACGGT 1176
Query 1208 TACAGATGGAGAAAATACGGCCAGAAAGTCGTTAAGGGAAACCCAAATCCAAGAAGCTAC 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TACAGATGGAGAAAATACGGCCAGAAAGTCGTTAAGGGAAACCCAAATCCAAGAAGCTAC 1236
Query 1268 TACAAGTGCACAACCATCGGTTGTCCAGTGAGGAAACATGTGGAGAGAGCATCACACGAC 1327
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1237 TACAAGTGCACAACCATCGGTTGTCCAGTGAGGAAACATGTTGAGAGAGCATCACACGAT 1296
Query 1328 ATGAGAGCAGTAATCACAACCTACGAAGGGAAACACAACCACGATGTTCCTGCAGCTCGT 1387
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 ATGAGAGCGGTAATCACAACCTACGAAGGGAAACACAACCACGATGTTCCTGCAGCTCGT 1356
Query 1388 GGTAGCGGTTACGCCACAAACAGAGCACCACAGGATTCGTCTTCAGTCCCGATTAGACCA 1447
||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 1357 GGTAGCGGTTATGCCACAAACAGAGCCCCACAGGATTCTTCTTCAGTCCCAATTAGACCA 1416
Query 1448 GCTGCTATTGCTGGTCACTCCAACTACACTACTTCTTCTCAAGCACCATATACACTTCAG 1507
|||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct 1417 GCTGCTATTGCTGGTCACTCCAACTACACTGCTTCTTCTCAAGCACCATATACGCTCCAG 1476
Query 1508 ATGCTGCACAACAACAACACTAATACCGGGCCTTTTGGTTACGCCATGaacaacaataac 1567
|||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||
Sbjct 1477 ATGCTGCACAACAACAACACTAATTCCGGGGCTTTTGGTTACGCTATGAACAACAATAAC 1536
Query 1568 aacaacagcaaccttcaaacgcaacaaaacTTTGTTGGTGGTGGATTCTCTAGAGCAAAG 1627
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1537 AACAACAGCAACCTTCAAACGCAACAAAACTTTGTTGGTGGTGGGTTTTCTAGAGCAAAG 1596
Query 1628 GAAGAACCAAACGAGGAGACCTCATTTTTCGATTCGTTTATGCCCTGAAGAAAAAAGGAA 1687
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1597 GAAGAACCAAACGAGGAGACCTCGTTTTTCGATTCGTTTTTGCCCTGAAGAAAAAAGGAA 1656
Query 1688 CCAGTTGTTCCTTTTTTATGTTCCTTTTGTACATTTCTGCCACCAAAGGATTTTACTACT 1747
| | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 TC--T-GTT----------GTTCCTTTTGTACATTTCTGCCACCAAAGGATTTTACTACT 1703
Query 1748 TACTAGTTATCCTGCAGGATAGTAAGTCAGACTTCTATAGTCCATAGAGAAAttttttca 1807
||||||| |||||||||||||||| || ||||| ||||||||||||||| ||||||||
Sbjct 1704 TACTAGTGATCCTGCAGGATAGTA-GTAAGACT---ATAGTCCATAGAGAA-TTTTTTCA 1758
Query 1808 tttgttttttCACACGCCTGTAATATGTTTAATGTTTGTACTTT-GTACCATAGAACTAG 1866
||||||||||||||||||||||||||||||||||||||||| | | || ||||| |
Sbjct 1759 TTTGTTTTTTCACACGCCTGTAATATGTTTAATGTTTGTACCATAGAAC--TAGAAAAAA 1816
Query 1867 AACACGGAATAAAACCAATCAATTTTCA 1894
|| || ||||||||||||||||||||||
Sbjct 1817 AAAACTGAATAAAACCAATCAATTTTCA 1844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71457299620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5