BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38480.1
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321547 jgi|Araly1|321547|fgenesh1_pm.C_scaffold_4001604 898 0.0
> Ahg321547 jgi|Araly1|321547|fgenesh1_pm.C_scaffold_4001604
Length=567
Score = 898 bits (486), Expect = 0.0
Identities = 542/569 (95%), Gaps = 4/569 (1%)
Strand=Plus/Plus
Query 104 ATGACGAATCCCGA-TAACATGAAACCGGTTGAAGCTACTGACGTGGA-ATCTGCGGCGG 161
|||||||||||||| |||| ||| |||||||||| |||||||||||| | |||||||||
Sbjct 1 ATGACGAATCCCGACAAACA-GAAGCCGGTTGAAGTTACTGACGTGGAGA-CTGCGGCGG 58
Query 162 AGAAGACGTCGGAGCCGACGCCGGCATCTGGAACGTCGACGATTACTCAGAGATGGAAAA 221
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 59 AGAAGACGTCGGAGCCGACGCCGGCGTCTGGAACGTCGACGATTACTCAGAGATGGAAAA 118
Query 222 GAGAGGATTTGATAAAGAAAGCATCTCCGATTACGAGAGGAATCTGTCTTTTGTTCTCTC 281
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 119 GAGAGGATTTGATAAAGAAAGCATCTCCGATTACGAGAGGAATTTGTCTATTGTTCTCTC 178
Query 282 TTATTGCTTTCTTAATTATGGTCTCTAATAAACATGGTTACGGTAGAAACTTCAATGACT 341
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 179 TTATTGCTTTCTTAATTATGGTCTCTAATAAACATGGTTACGGTAGAAACTTCAATGAGT 238
Query 342 ACGAAGAGTACAGATATGTATTGGCGATTTCGATTATTTCAACATTATACACTGCGTGGC 401
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 239 ACGAAGAGTACAGATATGTATTGGCGATATCGATTATTTCAACATTATACACTGCGTGGC 298
Query 402 AAACATTTGCACATTTCTCAAAAAGGGAAATTTTCGATCGCCGGACTTCTATTTTGGTCG 461
||||||||||||||||||||||||||||| |||||||||||||||| || | ||||||||
Sbjct 299 AAACATTTGCACATTTCTCAAAAAGGGAATTTTTCGATCGCCGGACATCAACTTTGGTCG 358
Query 462 ATTTCTCCGGCGACCAGATTGTGGCGTATTTGCTTATATCAGCTGCATCATCTGCAATTC 521
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 359 ATTTCTCCGGCGACCAGATTGTAGCGTATTTGCTCATATCAGCTGCATCTTCTGCAATTC 418
Query 522 CATTGACAAACATATTCAGAGAAGGTCAAGATAACATTTTCACTGATTCTGCTGCTTCTG 581
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CATTGACAAACAGATTCAGAGAAGGTCAAGATAACATTTTCACTGATTCTGCTGCTTCTG 478
Query 582 CTATAAGTATGGCTATCTTCGCATTCATTGCTTTAGCTCTCTCTGCTCTCTTCTCCGGTT 641
|||| || |||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 479 CTATCAGCATGGCTATCTTCGCATTCGTCGCGTTAGCTCTCTCTGCTCTCTTCTCCGGTT 538
Query 642 ACAAACTCTCCACTCATTCTTTTATCTGA 670
|||||||||||||||||||||| || |||
Sbjct 539 ACAAACTCTCCACTCATTCTTTCATTTGA 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32938200288
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5