BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G38480.1 Length=889 Score E Sequences producing significant alignments: (Bits) Value Ahg321547 jgi|Araly1|321547|fgenesh1_pm.C_scaffold_4001604 898 0.0 > Ahg321547 jgi|Araly1|321547|fgenesh1_pm.C_scaffold_4001604 Length=567 Score = 898 bits (486), Expect = 0.0 Identities = 542/569 (95%), Gaps = 4/569 (1%) Strand=Plus/Plus Query 104 ATGACGAATCCCGA-TAACATGAAACCGGTTGAAGCTACTGACGTGGA-ATCTGCGGCGG 161 |||||||||||||| |||| ||| |||||||||| |||||||||||| | ||||||||| Sbjct 1 ATGACGAATCCCGACAAACA-GAAGCCGGTTGAAGTTACTGACGTGGAGA-CTGCGGCGG 58 Query 162 AGAAGACGTCGGAGCCGACGCCGGCATCTGGAACGTCGACGATTACTCAGAGATGGAAAA 221 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 59 AGAAGACGTCGGAGCCGACGCCGGCGTCTGGAACGTCGACGATTACTCAGAGATGGAAAA 118 Query 222 GAGAGGATTTGATAAAGAAAGCATCTCCGATTACGAGAGGAATCTGTCTTTTGTTCTCTC 281 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 119 GAGAGGATTTGATAAAGAAAGCATCTCCGATTACGAGAGGAATTTGTCTATTGTTCTCTC 178 Query 282 TTATTGCTTTCTTAATTATGGTCTCTAATAAACATGGTTACGGTAGAAACTTCAATGACT 341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 179 TTATTGCTTTCTTAATTATGGTCTCTAATAAACATGGTTACGGTAGAAACTTCAATGAGT 238 Query 342 ACGAAGAGTACAGATATGTATTGGCGATTTCGATTATTTCAACATTATACACTGCGTGGC 401 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 239 ACGAAGAGTACAGATATGTATTGGCGATATCGATTATTTCAACATTATACACTGCGTGGC 298 Query 402 AAACATTTGCACATTTCTCAAAAAGGGAAATTTTCGATCGCCGGACTTCTATTTTGGTCG 461 ||||||||||||||||||||||||||||| |||||||||||||||| || | |||||||| Sbjct 299 AAACATTTGCACATTTCTCAAAAAGGGAATTTTTCGATCGCCGGACATCAACTTTGGTCG 358 Query 462 ATTTCTCCGGCGACCAGATTGTGGCGTATTTGCTTATATCAGCTGCATCATCTGCAATTC 521 |||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct 359 ATTTCTCCGGCGACCAGATTGTAGCGTATTTGCTCATATCAGCTGCATCTTCTGCAATTC 418 Query 522 CATTGACAAACATATTCAGAGAAGGTCAAGATAACATTTTCACTGATTCTGCTGCTTCTG 581 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 CATTGACAAACAGATTCAGAGAAGGTCAAGATAACATTTTCACTGATTCTGCTGCTTCTG 478 Query 582 CTATAAGTATGGCTATCTTCGCATTCATTGCTTTAGCTCTCTCTGCTCTCTTCTCCGGTT 641 |||| || |||||||||||||||||| | || |||||||||||||||||||||||||||| Sbjct 479 CTATCAGCATGGCTATCTTCGCATTCGTCGCGTTAGCTCTCTCTGCTCTCTTCTCCGGTT 538 Query 642 ACAAACTCTCCACTCATTCTTTTATCTGA 670 |||||||||||||||||||||| || ||| Sbjct 539 ACAAACTCTCCACTCATTCTTTCATTTGA 567 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32938200288 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5