BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38490.1
Length=1795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482859 jgi|Araly1|482859|fgenesh2_kg.4__1919__AT2G38490.1 2466 0.0
> Ahg482859 jgi|Araly1|482859|fgenesh2_kg.4__1919__AT2G38490.1
Length=1689
Score = 2466 bits (1335), Expect = 0.0
Identities = 1563/1672 (93%), Gaps = 20/1672 (1%)
Strand=Plus/Plus
Query 46 Ctgttt-t-tttgctctgttttttttgtttgtttgttAATGGCCGAAGACTCTAATTCTT 103
|||||| | ||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct 30 CTGTTTCTATTTGCTCTG--TTTTTT-TTTGTTGGTTAATGGCCGAAGACTCTAATTCTT 86
Query 104 CCGAATCAATCATTGTTAACGTCACCGGAGATGATAATAAGTCGGCTTTGTTCGGTAAGT 163
|||| |||||||| ||||| |||| ||||||||||||||||||||| |||||||||||||
Sbjct 87 CCGATTCAATCATCGTTAATGTCATCGGAGATGATAATAAGTCGGCGTTGTTCGGTAAGT 146
Query 164 ACGATCTCGGTAAGCTCCTCGGTAGCGGCGCGTTTGCCAAAGTCTACCAAGCGGAGGATC 223
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 ACGACCTCGGAAAGCTCCTCGGTAGCGGCGCGTTTGCCAAAGTCTACCAAGCGGAGGATC 206
Query 224 TTCAAAACGGCGGCGAAAGCGTTGCGATCAAAGTCGTACaaaaaaaaCGTTTGAAAGACG 283
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 TCCAAAACGGTGGAGAAAGCGTTGCGATCAAAGTCGTACAAAAAAAACGTTTGAAAGACG 266
Query 284 GTTTAACGGCGCACGTTAAGAGAGAAATATCTGTCATGCGCCGCCTCCGTCATCCTCATA 343
||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||
Sbjct 267 GTTTAACGGCGCACGTTAAGAGAGAGATCTCTGTCATGCGCCGTCTTCGTCATCCTCATA 326
Query 344 TCGTGCTCCTCTCCGAAGTCCTCGCCACAAAGACGAAGATCTACTTCGTCATGGAGCTAG 403
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 327 TCGTGCTCCTCTCCGAAGTCCTCGCCACCAAGACGAAGATCTATTTCGTCATGGAGCTAG 386
Query 404 CCAAAGGTGGTGAGCTCTTCTCAAGAGTCACCAGCAACCGTTTCACAGAGAGTCTTAGCC 463
||||||| || ||||| ||||| |||||||| |||||||||||||| |||||||| ||||
Sbjct 387 CCAAAGGCGGCGAGCTTTTCTCCAGAGTCACTAGCAACCGTTTCACGGAGAGTCTCAGCC 446
Query 464 GGAAATATTTCCGGCAATTGATCTCCGCCGTGAGATACTGCCACGCAAGAGGAGTTTTCC 523
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 447 GGAAATATTTCCGGCAGTTGATCTCCGCCGTGAGATACTGCCACGCAAGAGGAGTTTTTC 506
Query 524 ACCGTGATTTGAAGCCGGAGAATCTCCTCCTCGACGAGAATCGAGATCTGAAGGTTTCAG 583
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 ACCGTGATTTGAAACCGGAGAATCTCCTCCTCGACGAGAATCGAGATCTGAAGGTTTCAG 566
Query 584 ACTTCGGTCTCAGTGCGATGAAGGAGCAGATCCACCCCGACGGAATGCTACATACGCTCT 643
||||||||||||||||||||||||| ||||| | |||||||| |||||||| ||||| |
Sbjct 567 ACTTCGGTCTCAGTGCGATGAAGGAACAGATTCGTCCCGACGGGATGCTACACACGCTTT 626
Query 644 GTGGAACTCCGGCTTACGTAGCACCGGAGCTTCTTTTGAAGAAAGGCTACGACGGTTCTA 703
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 627 GTGGAACTCCGGCTTACGTTGCACCGGAGCTTCTTTTGAAGAAAGGCTACGACGGTTCTA 686
Query 704 AAGCTGATATTTGGTCATGCGGCGTCGTTTTGTTTCTTCTCAACGCAGGCTACTTGCCGT 763
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 687 AAGCTGATATTTGGTCATGCGGCGTCGTTTTGTTCCTTCTCAACGCCGGTTACTTGCCGT 746
Query 764 TTCGTGATCCAAACATCATGGGACTCTACCGGAAAATCCACAAGGCTCAATACAAGTTAC 823
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 747 TTCGTGATCCAAACATCATGGGACTATACCGGAAAATCCACAAGGCTCAATACAAGTTAC 806
Query 824 CGGATTGGACATCTTCAGATCTGCGGAAACTCCTCCGCCGTCTCTTGGAGCCAAATCCGG 883
|||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 807 CGGATTGGACATCTTCAGATCTACGGAAACTCCTCCGCCGTCTCTTGGAGCCTAACCCGG 866
Query 884 AACTGCGAATCACCGTGGAGGAGATTCTAAAGGATCCGTGGTTCAATCATGGAGTAGATC 943
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 AACTGCGGATCACCGTCGAGGAGATTCTAAAGGATCCGTGGTTCAATCATGGAGTAGATC 926
Query 944 CAAGCGAAATCATCGGAATCCAAGCCGATGATTACGATCTGGAAGAAAACGGTAAAATTC 1003
||||||||| |||||||||||||||||| ||||||||||| || |||||||| || |||
Sbjct 927 CAAGCGAAACCATCGGAATCCAAGCCGACGATTACGATCTAGAGGAAAACGGGAAGATTT 986
Query 1004 TAAACGCGTTCGATTTGATTTCTTCGGCGTCGAGCTCGAATCTCTCCGGTTTGTTTGGAA 1063
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 987 TAAACGCCTTCGATTTGATTTCGTCGGCGTCGAGCTCGAATCTCTCCGGTTTGTTTGGAA 1046
Query 1064 ATTTCGTGACGCCGGATCATTGCGACCAGTTTGTATCCGATGAGAGTACGGCCGTTATTA 1123
||||||||||||||||||||||||||||||| || ||||||||||||||||| | ||||
Sbjct 1047 ATTTCGTGACGCCGGATCATTGCGACCAGTTCGTCTCCGATGAGAGTACGGCGGAGATTA 1106
Query 1124 TGAGGAAGGTCGAGGAAGTTGCGAAGCAGTTAAATTTGAGAATCGCGAAGAAGAAGGAGA 1183
||||||||||||||||||||| ||||||||| ||| || |||||||||||||||||||||
Sbjct 1107 TGAGGAAGGTCGAGGAAGTTGTGAAGCAGTTGAATCTGCGAATCGCGAAGAAGAAGGAGA 1166
Query 1184 GAGCGATAAAGCTTGAAGGTCCACATGGAGTAGCTAATGTCGTCGTTAAAGTTCGCCGGC 1243
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1167 GAGCGATCAAGCTTGAAGGTCCACATGGAGTAGCTAATGTCGTCGTTAAAGTTCGTCGGC 1226
Query 1244 TAACAAATGAACTAGTGATGGTGGAGATGAAGAACAAGCAAAGAGACGTGGGCTTGGTTT 1303
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1227 TAACAAAAGAACTAGTGATGGTGGAGATGAAGAACAAGCAGAGAGACGTGGGCTTGGTTT 1286
Query 1304 GGGCCGATGCTCTTAGACAAAAGTTACGTCGTTTGATTAACCAACCGGTTTATAAAGTTC 1363
|||||||||||||||| ||||| ||||||||||||||||||||||||||| || ||||
Sbjct 1287 GGGCCGATGCTCTTAGGCAAAAACTACGTCGTTTGATTAACCAACCGGTTTTTAGGGTTC 1346
Query 1364 CTGACAAACCGTAAAACGGTTTCAACACTAAACCAACAATCCGTGCGTTTTACTTTTAGA 1423
|||||||||||||||| |||||| |||| ||||||||||||||||||||||||| ||
Sbjct 1347 CTGACAAACCGTAAAATGGTTTCCACACAAAACCAACAATCCGTGCGTTTTACTCG--GA 1404
Query 1424 ATTTT-CAACGTACTACACTCGGGATCGAGACGCATTGTGGTTAACCGGTTCGGTTTACA 1482
||||| ||||||| | || ||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1405 ATTTTTCAACGTAATCCATTCGCGATCGAGACGCATT-TGGTTAACCGGTTCGGTTTACA 1463
Query 1483 TTGGAGCAGGGAGAGTAATGGGACGATCCGCCTCTTTGTATATAAAAATGACAAGAAGAA 1542
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 TGGGAGCAGAGAGAGTAATGGGACGATCCGCCTCTTTGTATATAAAAATGACAAGAAGAA 1523
Query 1543 AGaaaaaaaCAAACCGGGATTCAATTATTTTTGTTTATTTATTTTCGGAGTATAATTTAA 1602
| ||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1524 A-AAAAA--CAAACCGGGATTCAATT-TTTTTGTTTATTT-TTTTCGGAGTATAATTTAA 1578
Query 1603 ACACAAAAATTATTTGCTTTATTCATCGGAGAGAATTTGAATAAAACTCTGATTTGAACT 1662
|||||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||||
Sbjct 1579 ACACAAAA-TTATTTGCTTTATTCATCGCAGAGAAATTGAATAAAACTCTGATCTGAACT 1637
Query 1663 TTGTAGCCTTT-T----ATGTGTGACCGTGTGTGTTTGCAAACTTGGGCCTT 1709
|||||| ||| | ||||||||| |||||||||||||||||||||||||
Sbjct 1638 TTGTAGTTTTTATGTGTATGTGTGACTGTGTGTGTTTGCAAACTTGGGCCTT 1689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67381643405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5