BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38500.1
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901770 jgi|Araly1|901770|Al_scaffold_0004_2420 1768 0.0
> Ahg901770 jgi|Araly1|901770|Al_scaffold_0004_2420
Length=1071
Score = 1768 bits (957), Expect = 0.0
Identities = 1035/1073 (96%), Gaps = 4/1073 (0%)
Strand=Plus/Plus
Query 68 ATGGCTCTGATGCGAACCAGGAGCCAGTTGAACGTATCTTCATTGACTCCACCACCTCCT 127
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCTCTGATGCGAACCAGGAGCCAATTGAACGTATCTTCATTGACTCCACCACCACCT 60
Query 128 CCTCCGTCTCCGATCCCTAGAGCCAGAGGCTCTCGTTGCGCTGCCAGCGAGATTCTCACC 187
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CCTCCGTCTCCAATCCCTAGAGCCAGAGGATCTCGTTGCGCTGCCAGCGAGATTCTCACC 120
Query 188 GAGATCATTGAGCGATCGATTCAGGTTCCTGAGCTCACGCTTCCGGAATCTCATTCTGGA 247
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGATCATTGAGCGATCGGTTCAGGTTCCTGAGCTCACGCTTCCGGAATCTCATTCTGGA 180
Query 248 GGTGAATCTTGCGGCTCACGTCATCTGATCCCGGCGGAGATTGATTTTAGGTTATTGGCG 307
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 GGTGAATCTTGCGGTTCACGTCATCTGATCCCGGCGGAGATTGATTTCCGGTTATTGGCG 240
Query 308 TCGAGGAGAGAAGGTTCGGTGGATCGGTTGGTGCGATCGGCGAGAGAGTTTGGGGCGTTT 367
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 TCGAGGAGAGAAGGTTCCGTGGATCGGTTGGTGCGATCGGCGAGAGAGTTTGGAGCGTTT 300
Query 368 CGTGTGAGTTATCATGGGATATCTGGGGAGGAGCTGAGGTCTCTTGTGAGGGAATCGGGT 427
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 CGTGTGAGTTATCATGGGATATCGGGGGAGGAGCTGAGGTCTCTTGTGAGGGAATCGGGT 360
Query 428 CGGGTTTTCGGAGTTTTGGAGGGAAGAGACACCGGGTTTCACCGGAGTGTTGTCGGAAAC 487
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 CGGGTTTTCGGAGTTTTGGAGGGAAGAGACACCGGCTTTCACCGGAGTGTTGTCGGAAAC 420
Query 488 AGAGACGAGATCGTGTGGGTACGGTCGTGGAAGGAGAGGATGGAATGGGCGCGCGAGTAT 547
|| ||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 421 AGGGACGAGATCGTGTGGGTACGGTCGTGGAAAGAGCGCATGGAATGGGCGCGCGAGTAT 480
Query 548 ATCGGACCGGAAAGATACCGCTGCTTCAGCCAAGAAATGGAGAATGTAGCTGATAAACTT 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCGGACCGGAAAGATACCGCTGCTTCAGCCAAGAAATGGAGAATGTAGCTGATAAACTT 540
Query 608 GAAGATATAGCGAGGAAACTAGGGCAAATAATGGTAGAGAACTCAAGAAGACCAAA-TGA 666
||||| |||||||||||||||||||| |||||||||||||||||||||| | |||| |||
Sbjct 541 GAAGAGATAGCGAGGAAACTAGGGCAGATAATGGTAGAGAACTCAAGAA-AACAAAGTGA 599
Query 667 TAAGAAGATACAAAGAGGAGAATCTGTGCTTAGCGTTTACAGGTACAATCATGAAAATGT 726
|||| ||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 600 CAAGAGGATACAAAGAGGAGAATCTGTACTCAGCGTTTACAGGTACAATCATGAAAACGT 659
Query 727 AACTGAGCAAAGCCCTCCTTTGCCCAAAGAGAGGACCGAAGAAATGCTTCATTATACACT 786
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 660 AACTGAGCAAAGCCCTCCTTTGCCGAAAGAGAGGACCGAAGAAATGCTTCATTACACATT 719
Query 787 CAGCCTTCACCTTCCGGCTAAGAACTGCGAGTTCCGCGTCAACTCAGGGAAAGGTCCACT 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CAGCCTTCACCTTCCGGCTAAGAACTGCGAGTTCCGCGTCAACTCAGGGAAAGGTCCACT 779
Query 847 TTCTTTCCATGCTGATCCCGACACTATCCTTGTCACTTTTGGTCGTCAGCTTGAGGAATG 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 780 TTCTTTCCATGCTGATCCCGACACTATCCTTGTCACTTTTGGTCGTCAGCTTGAGGATTG 839
Query 907 GAGTTTAGGAGAATTCAAATGTCGTCAAGGAGAAATCATCTATCATCCTGATGCATATGG 966
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 840 GAGTTTAGGAGAATTCAAATGTCGTCAAGGAGAAATCATCTATCATCCAGATGCGTATGG 899
Query 967 CTCGCCCACTTCCTTCTCCGTAGAGCTCAAGTGCATGTCTCTTTTCTTATCACACACTTC 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTCGCCCACTTCCTTCTCCGTAGAGCTCAAGTGCATGTCTCTTTTCTTATCACACACTTC 959
Query 1027 TATCGCAACAACCTCCAAAACATTCTCTTTAACCCATCAGATTTTCACTGCTTTCCTCCT 1086
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 960 TATCGCAACAACTTCCAAAACCTTCTCTTTAACCCATCAGATTTTCACTGCTTTCCTCCT 1019
Query 1087 ACtttttttCTTCCAATGTTTTTGGATTTATGGATCACGAA-TGGCCGCTTAG 1138
||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 1020 ACTTTTTTTCTTCCAATGTTTTTGGATTTATGGATCAA-AAGTGGCCCCTTAG 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50627233776
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5