BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38510.1
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934600 jgi|Araly1|934600|scaffold_402588.1 2294 0.0
> Ahg934600 jgi|Araly1|934600|scaffold_402588.1
Length=1501
Score = 2294 bits (1242), Expect = 0.0
Identities = 1388/1461 (95%), Gaps = 0/1461 (0%)
Strand=Plus/Plus
Query 1 ATGCAGGTGGGAGAGGAGATGGCGTCACTCACAAAAATAGCTTGCCCGATTGTGATGACA 60
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 21 ATGCAGGTGGGAGAAGAGATGGCGTCACTCACAAAAATAGCTTGCCCGATCGTGATGACA 80
Query 61 TCACTCCTCATATTCTCAAGATCAATAATCTCAATGTGGTTCTTGAGTCATCTCGGAAAA 120
||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||
Sbjct 81 TCACTCCTCATATTCTCGCGATCAATAATCTCTATGTGGTTCTTGAGTCACCTGGGAAAA 140
Query 121 GTCGAACTCGCTGGTGGTGCACTCGCTATGGGCTTTGGAAACATCACTGGAGTCTCCGTA 180
|| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| ||
Sbjct 141 GTTGAACTCGCTGGTGGTGCACTCGCCATGGGCTTCGGAAACATCACCGGAGTCTCCATA 200
Query 181 CTTAAAGGCCTTTCCGTTGGTATGGACCCAATCTGTGGCCAAGCCTTCGGAGCCAAACGT 240
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 CTCAAAGGCCTTTCCGTTGGTATGGACCCAATCTGTGGCCAAGCCTTCGGAGCCAAACGC 260
Query 241 TGGACCGTACTTAGCCACACGTTTCAGAAAATGTTCTGTCTCTTAATTGTCGTCTCTGTT 300
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 261 TGGACTGTACTGAGCCACACGTTTCAGAAAATGTTCTGTCTCTTAATTGTCGTCTCTGCT 320
Query 301 CCAATCGCCGTTACGTGGCTCAACATCGAACCCATTTTCCTACGGTTGGGTCAGGACCCA 360
|||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 321 CCAATCGCCGTTGCGTGGCTCAACATCGAACCCATTTTCCTATGGTTAGGTCAGGACCCG 380
Query 361 GATATTACCAAGGTAGCCAAAACCTATATGCTCTTCTTCGTCCCTGAGCTCTTGGCTCAG 420
|||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 381 GATATTACCAAGGTCGCCAAAACCTACATGCTCTTCTTCGTCCCTGAGCTCCTGGCTCAA 440
Query 421 GCCATGCTCCATCCGCTTCGAACGTTCCTTAGAACGCAAGGCTTAACATCACCGCTCACG 480
||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||
Sbjct 441 GCCATGCTCCATCCGCTTCGAACATTCCTCAGAACGCAAGGCTTAACGTCACCGCTGACT 500
Query 481 ATATCTGCCATTGTATCCATTCTTCTTCATCCTCTCTTCAACTACGTCTTTGTCGTGCGT 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 501 ATATCTGCCATTGTATCCATTCTTCTTCATCCTCTCTTCAACTACGTCTTCGTCGTGCGT 560
Query 541 ATGCGTTTAGGCGTTAAGGGTGTGGCCATCGCAATGGCTTTCAACACTATGAATATCGAC 600
||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||| ||
Sbjct 561 ATGCGTTTAGGCGTTAAGGGTGTTGCAATCGCAATGGCTTTTAACACAATGAATATCAAC 620
Query 601 GTGGGACTGCTCGTTTATACGTGCTTCTCGGATTCTCTAATCAAACCGTGGGAAGGGCTC 660
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 621 GTTGGACTGCTCGTTTACACGTGCTTCTCGGATTCTCTAATCAAACCGTGGGAAGGGCTG 680
Query 661 GCTTTGCGGTCACTTTTCCGCGGCTGGTGGCCGCTGCTTTCTCTAGCCGCACCAAGCGCT 720
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 681 GCTTTGCGGTCGCTTTTCCGCGGCTGGTGGCCGCTGCTTTCACTAGCCGCACCAAGCGCC 740
Query 721 ATCTCGGTGTGTTTGGAGTATTGGTGGTATGAGATCATGCTTTTTCTTTGTGGGCTTCTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ATCTCGGTGTGTTTGGAGTATTGGTGGTATGAGATCATGCTTTTTCTTTGTGGGCTTCTT 800
Query 781 GGGAACCCTAAAGCAAGCGTGGCCGCCATGGGAATATTGATTCAGACCACCGGGATACTA 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 801 GGGAACCCTAAAGCAAGCGTGGCCGCCATGGGAATATTGATTCAGACCACGGGGATACTA 860
Query 841 TACGTAGTCCCGTTTGCTATTAGCAGCGCCATTGCAACCCGTGTAGGTCACGCTCTTGGA 900
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 861 TACGTAGTCCCGTTTGCTATAAGCAGCGCCATTGCAACCCGTGTAGGTCACGCACTTGGA 920
Query 901 GGCGGCCAACCAACACGGGCACAATGTACGACCGTGATTGGCTTGATACTCGCGGTAGCG 960
||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 921 GGCGGTCAACCCACACGGGCGCAATGTACGACCGTGATTGGTTTGATACTCGCGGTAGCG 980
Query 961 TACGGTTTAGCAGCTGCTGTTTTTGTGACCGCGCTTAGGTCGGTTTGGGGAAAGATGTTC 1020
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 981 TACGGTTTAGCAGCAGCTGTTTTTGTGACGGCGCTTAGGTCGGTTTGGGGAAAGATGTTC 1040
Query 1021 ACGGACGAACCGGAGATTCTCGGGCTTATTTCGGCTGCGCTTCCGATCTTGGGGCTTTGC 1080
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 1041 ACGGACGAACCGGAGATCCTTGGGCTTATTTCGGCCGCGCTTCCGATCTTGGGGCTTTGC 1100
Query 1081 GAGATTGGAAACTCGCCACAGACGGCTGCTTGCGGAGTCTTGACTGGGACGGCTAGGCCT 1140
||||| ||||||||||| ||||| || |||||||||||||||||||||||||| ||||||
Sbjct 1101 GAGATCGGAAACTCGCCGCAGACTGCCGCTTGCGGAGTCTTGACTGGGACGGCGAGGCCT 1160
Query 1141 AAAGATGGAGCACGCGTTAACCTATGCGCATTCTACATTGTGGGCTTGCCTGTGGCAGTT 1200
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 AAAGATGGAGCACGCGTCAACCTATGCGCATTCTACATTGTGGGCTTGCCTGTGGCAGTT 1220
Query 1201 ACGACCACGTTTGGGTTTAAGGTTGGGTTTCGTGGGCTATGGTTTGGACTGTTATCTGCG 1260
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 ACGACCACGTTTGGGTTCAAGGTTGGGTTTCGTGGGCTATGGTTTGGACTGTTATCTGCG 1280
Query 1261 CAGATGACGTGTTTGGTAATGATGCTTTATACGTTAATCCGTACGGACTGGTCTCATCAA 1320
||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 1281 CAGATGACGTGTTTGGTAATGCTGCTTTATACGTTAATCCGTACGGACTGGACCCATCAA 1340
Query 1321 GTGAAGCGGGCAGAGGAACTTACCTCCGCTGCAGCCGACAAAAGCCATTCGGAAGACGAA 1380
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 1341 GTGAAGCGGGCAGAGGAACTTACCTCCGCTGCAGCCGAAAAAAGTCATTCGGAAGAAGAA 1400
Query 1381 ACCGTCCATGCTGAAGTACAAGACGATGATGATGTGAGTAGCAATGATCTGGAGATTGGT 1440
|||||||||||||||||| |||| |||||||| | ||||||||||||||||||||||||
Sbjct 1401 ACCGTCCATGCTGAAGTAGGAGACAATGATGATATTAGTAGCAATGATCTGGAGATTGGT 1460
Query 1441 TTACTACAAAATACGAATTGA 1461
||||||||||| |||||||||
Sbjct 1461 TTACTACAAAACACGAATTGA 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54659501575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5