BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38550.1
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482864 jgi|Araly1|482864|fgenesh2_kg.4__1924__AT2G38550.1 1794 0.0
> Ahg482864 jgi|Araly1|482864|fgenesh2_kg.4__1924__AT2G38550.1
Length=1286
Score = 1794 bits (971), Expect = 0.0
Identities = 1202/1306 (92%), Gaps = 46/1306 (4%)
Strand=Plus/Plus
Query 87 GAATCCCTAAGCTTAAAGTCTCTATTATTCTCTAATCTCTTCTTCGCCGACGACTTCTCT 146
||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 1 GAATCCCTAAGCTCAAAGTATCTCTCATTCTCTAATCTCTTCTTCGCCGACGACTTCTCT 60
Query 147 CACCAAGGCGACGTTTTGATCAGGCGATGATGAGTATCCCAATGGAGTTAATGTCTATCA 206
||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 61 CACCAAGGCGACGTTTTGATCAGGC---GATGAGTATCCCAATGGAGTTGATGTCCATCA 117
Query 207 GAAACCCTAATTCCACCTTGCTCTATAGAGCTCACTCTCGTCCGCCTGTGAAGCTCTGTG 266
||||||||||||| || |||||||| |||||||| ||||||||||| ||| | | |
Sbjct 118 GAAACCCTAATTCGACTTTGCTCTACAGAGCTCATTCTCGTCCGCCGGTG-A---C---G 170
Query 267 CTCCACCTCGTTCTCTCCTCCCTAGCCGACGCCATTTCAGTGCTCCTCGAGCTGTTGTTT 326
||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 171 --CCACCACGTACTCTCCTCCCTAGCCGACGCCATTTTAGTGCTCCTCGAGCTGTTGTTT 228
Query 327 CGTATCCAGGAATACGTTTCGGCTTTACCTCGCC-----G----GAAGTCTTGCTTAATC 377
||| | |||| ||||||||||||||| |||||| | ||||||||||||||||
Sbjct 229 CGTGTACAGGGCTACGTTTCGGCTTTAGCTCGCCTTATTGTCCAGAAGTCTTGCTTAATC 288
Query 378 GATCCGTCGTTGCTTTCGCTGCATCCCACGAGGATTCGGGAGAATCAGGTGTTGAGGTGG 437
||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||
Sbjct 289 GATCCGTCGTTGCTTTCGCTGCATCTCACGAGGATTTGGAAGAATCAGGTGTTGAGGTGG 348
Query 438 GGAAGGAGAAGAGTGATATAGATGTTGAAGATGATACATCTAAGGAAGCATGGAAACAAA 497
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GAAAGGAGAAGAGTGATATAGATGTTGAAGATGATACATCTAAGGAAGCATGGAAACAAA 408
Query 498 CTCTTGAGTCTTTTAAAGAGCAGGTATCAAAGATGCAGAGTGTGTCATCGGAGGCATACT 557
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 409 CTCTTGAGTCTTTTAAAGAGCAGGTATCAAAGATGCAGAGCGTGTCATCGGAGGCATACT 468
Query 558 CCGTTAACTCCCAAAAGGCGATGACGGTCTTGAAAGAAACTTCTGAACAACTTAGGATTC 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 CCGTTAACTCCCAAAAGGCGATGACGGTCTTGAAAGAAACTTCTGAACAACTTAGGATTC 528
Query 618 AAGCGGAAAAGGCGAAAGAAGAGTTGGGTACTAAAGCGAAAGTGGTTAGTGAAGAGGGTA 677
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 529 AAGCGGAAAAGGCGAAAGAAGAGTTGGGTACTAAAGCTAAAGTGGTTGGTGAAGAGGGTA 588
Query 678 GAGAATATATTTTGAAAGCAGCAGAAGAATCTCCATCAGATGTGAAAGAGATTGTTGAAG 737
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 589 GAGAATATATTTTGAAAGCAGCAGAAGAATCACCATCAGATGTGAAAGAGATCGTTGAAG 648
Query 738 CATTTGCCTCCACTGAGGATCTGAAAAATGTGTCCCGAGCGAATGATTTTCATGTTGGAA 797
|||| ||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 649 CATTCGCCGCCAGTGAGGATCTGAAAGATGTGTCCCGAGCGAATGATTTTCATGTTGGAA 708
Query 798 TACCTTATGGTCTACTCTTGCTTGTGGGTGGTTTTATTAACTTCATGGTATCGGGAAGCA 857
|||| |||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 709 TACCCTATGGTCTACTCCTGCTTGTCGGTGGTTTTATCAACTTTATGGTATCGGGAAGCA 768
Query 858 TTCCGGCCATCAGGTTTGGAGTCATTCTTGGTGGAGCCCTTTTTGCACTGAGCCTGGCAA 917
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 769 TTCCAGCCATCAGGTTTGGAGTCATTCTTGGTGGAGCTCTTTTTGCACTGAGCCTGGCAA 828
Query 918 GTCTAAAGTCTCATAGGAAAGGAGAGTCATCTACAAAGTTCTTAAAAGGACAGATGGCTA 977
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 829 GTCTAAAGTCTCATAGGAAAGGAGAGTCATCTACTAAGTTCTTAAAAGGACAGATGGCTA 888
Query 978 TAGTGGCAATCATATTTTTGAGAGAGTTGCGGTTGCTACTGTCTCAGAAATCGACGTTCC 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TAGTGGCAATCATATTTTTGAGAGAGTTGCGGTTGCTACTGTCTCAGAAATCGACGTTCC 948
Query 1038 TAGGtttttttACCACCCTTACAAGTGGTGGTGTGCTAGG-GTTTTACTTGTACAAGATG 1096
|||||||||||||||||||||| |||||||||||| | || |||||||||||||||||||
Sbjct 949 TAGGTTTTTTTACCACCCTTACGAGTGGTGGTGTGTT-GGCGTTTTACTTGTACAAGATG 1007
Query 1097 GTGGTCAAGAGAGAAAAGGGACCAACCTTAGAAGATGGCGGAGAAGATGAATCAAGCGAT 1156
|||| |||||||| |||||||| || |||||||||||| ||||||||||||||| |||||
Sbjct 1008 GTGGGCAAGAGAGGAAAGGGACAAAACTTAGAAGATGGAGGAGAAGATGAATCAGGCGAT 1067
Query 1157 GGGTTTGTAAGAAGTGAAGGATAAAGAAAAATGGGGTAAGAGGAAGAAGTGTTGTCGTCA 1216
||| ||||||||||||||||||| |||||||||| |||||| |||| ||||||| ||||
Sbjct 1068 GGGGTTGTAAGAAGTGAAGGATAGAGAAAAATGG--TAAGAGAAAGATGTGTTGTTGTCA 1125
Query 1217 ACATCAGCA---TCATATATGCCAAACTCTTTTGATATCTCTTTTTAAGTTGTGTACAAT 1273
||||||||| |||||||| ||||||||||||||| |||||||| | ||||||||||||
Sbjct 1126 ACATCAGCAGCATCATATAT-CCAAACTCTTTTGATGTCTCTTTT-A-GTTGTGTACAAT 1182
Query 1274 TTTTGCGATCAATC--CTTCTAATTTCCGTTGTATTT-G----G--ATTAGTGAGTCGTT 1324
||||| |||||||| ||||||||||||||||||||| | | ||||||||||| ||
Sbjct 1183 TTTTGAGATCAATCAGCTTCTAATTTCCGTTGTATTTTGATTAGTGATTAGTGAGTCATT 1242
Query 1325 T-AT--TAATATCAACAAACCAA-TAAAAACGAGAATTTTATTTTG 1366
| | ||||||||||||| || ||||| ||||||||||||||||
Sbjct 1243 TTACGATAATATCAACAAA--AAGTAAAAGCGAGAATTTTATTTTG 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51122831697
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5