BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38560.1
Length=1677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482865 jgi|Araly1|482865|fgenesh2_kg.4__1925__AT2G38560.1 2405 0.0
Ahg934563 jgi|Araly1|934563|scaffold_402551.1 542 4e-153
Ahg952169 jgi|Araly1|952169|scaffold_43300001.1 531 8e-150
Ahg345604 jgi|Araly1|345604|fgenesh1_pg.C_scaffold_4001946 296 3e-79
> Ahg482865 jgi|Araly1|482865|fgenesh2_kg.4__1925__AT2G38560.1
Length=1561
Score = 2405 bits (1302), Expect = 0.0
Identities = 1481/1567 (95%), Gaps = 13/1567 (1%)
Strand=Plus/Plus
Query 13 CTATCTTCTTCGTCGTGACTCAAACGAGGTTCCGCCGATTATAATCC-TTCTCTCCATAC 71
||||||| ||||||| |||||||||||||||||||||||||| |||| || ||||||| |
Sbjct 1 CTATCTTGTTCGTCGCGACTCAAACGAGGTTCCGCCGATTATTATCCTTTTTCTCCATTC 60
Query 72 TTGAGAGATTTTGTTGGATTGTTCTTTGTTCTGAGTCGCCTTGGATCTATCGGTGTTGGT 131
||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||
Sbjct 61 TTGAGAGATTTTGTTGGATTGTT-TTTGTTCTGAGTCGTCTTGGATCTGTCGGTGTTGGC 119
Query 132 GCTTTGTTTTTTGAGCTAGGGA-TTGTCGGAACGATGGAGAGTGATTTGATTGATTTGTT 190
|||||||| || |||||||||| ||| || |||||||| |||||||||||||| |||||
Sbjct 120 GCTTTGTTCTTGGAGCTAGGGATTTG-AGGGACGATGGAAAGTGATTTGATTGAATTGTT 178
Query 191 CGAGGGAGCTAAGAAGGCAGCCGATGCGGCGGCTCTTGACGGTGTTACCTCTTCAGGTCC 250
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 179 CGAGGGAGCTAAGAAGGCAGCCGATGCGGCGGCTCTCGACGGTGTTGCCTCTTCAGGTCC 238
Query 251 TGAGGTTTCTCAATGTATCGATGCCCTTAAACAGCTCAAGAAGTTTCCTGTCACATACGA 310
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 239 GGAGGTTTCTCAATGTCTCGATGCCCTTAAACAACTCAAGAAGTTTCCTGTCACATACGA 298
Query 311 TACCCTCGTTGCGACTCAGGTGGGAAAGAAGCTGAGGTCTCTTGCAAAACATCCTGTTGA 370
||| || |||||||||||||||||||| ||||||||||||||||||||||| ||| ||||
Sbjct 299 TACGCTTGTTGCGACTCAGGTGGGAAAAAAGCTGAGGTCTCTTGCAAAACACCCTATTGA 358
Query 371 AGATATCAAAAGCGTAGCTACTGATCTGCTTGAGATATGGAAGAAAGTTGTCATTGAAGA 430
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 GGAGATCAAAAGCGTAGCTACTGATTTGCTTGAGATATGGAAGAAAGTTGTCATTGAAGA 418
Query 431 GACAGCCAAAGCTAAGAAAACCGAAGGCACTAACGGTTGTAAAGAGGCTAAGGTGAATAA 490
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 419 GACAGCCAAGGCTAAGAAAACTGAAGGCACTAACGGTTGTAAAGAGGCTAAGGTGAATAA 478
Query 491 GATGGATGTTGAGAAGCCTTCAAATCCTGCTCCTGTTAAAGTTCAGAAACTTCAGAGGGG 550
|||||||||||| |||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 479 GATGGATGTTGATAAGCCTTCAAATCCCGCGCCTGTTAAAGTCCAGAAACTTCAGAGGGG 538
Query 551 TGATTCGGCTAAGAGTATCAAGGTTGAGAGAAAGGAACCTGACAATAAAGTTGTTACCGG 610
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 539 TGATTCGGCTAAGAGTATCAAGGTTGAGAGAAAGGAACCAGACAATAAAGGCGTTACCGG 598
Query 611 TGTCAAGATAGAGAGAAAGGTACCTGACATCAAAGTCACCAATGGAACCAAGATAGATTA 670
|||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||||||
Sbjct 599 TGTCAAGATAGAGAGAAAGGAACCAGACAACAAAGTCACTAATGGAACCAAGATAGATTA 658
Query 671 TCGTGGTCAGGCTGTGAAAGATGAAAAGGTCTCAAAGGACAACCAATCAAGTATGAAAGC 730
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCGTGGTCAGGCTGTTAAGGATGAAAAGGTCTCAAAGGACAACCAATCAAGTATGAAAGC 718
Query 731 TCCAGCTAAAGCAGCTAATGCTCCTCCAAAACTAACTGCAATGCTCAAATGCAATGATCC 790
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TCCAGCTAAGGCACCTAATGCTCCTCCAAAACTAACTGCAATGCTCAAATGCAATGATCC 778
Query 791 TGTGCGTGACAAAATCCGTGAGTTGCTTGTGGAGGCGTTGTGCAGGGTTGCTGGAGAAGC 850
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 779 TGTGCGTGACAAAATCCGTGAGTTGCTTGTAGATGCGTTGTGCAGGGTTGCTGGAGAAGC 838
Query 851 TGATGACTATGAGAGAGAGTCAGTAAATGCTAGTGATCCTTTACGTGTTGCTGTCTCAGT 910
|||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct 839 TGATGACTATGAGAGAAAGTCAGTAAATGCTAGTGATCCACTCCGTGTTGCTGTCTCAGT 898
Query 911 GGAATCACTGATGTTTGAGAAATTGGGTCGCTCAACTGGAGCTCAGAAGCTTAAGTACAG 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GGAATCACTGATGTTTGAGAAATTGGGTCGCTCAACTGGAGCTCAGAAGCTTAAGTACAG 958
Query 971 ATCTATAATGTTCAACCTGAGGGATAGTAACAACCCGGACTTAAGAAGGAGGGTTCTCAC 1030
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 959 ATCTATAATGTTCAACCTGAGGGACGGTAACAACCCGGACTTAAGAAGGAGGGTTCTCAC 1018
Query 1031 TGGGGAGATTTCACCAGAGAAACTCATAACATTGTCTGCCGAAGATATGGCAAGTGACAA 1090
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 1019 CGGGGAGATTTCACCAGAGAAACTCATCACATTGTCTGCTGAAGAAATGGCAAGCGACAA 1078
Query 1091 GAGGAAACAAGAGAACAACCAGATCAAAGAGAAAGCCCTGTTTGATTGTGAGCGTGGTCT 1150
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1079 GAGGAAACAAGAGAACAATCAGATAAAAGAGAAAGCCCTGTTTGATTGCGAGCGTGGTCT 1138
Query 1151 TGCTGCAAAAGCATCTACCGACCAGTTCAAGTGCGGGCGGTGTGGTCAGCGCAAATGCAC 1210
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1139 TGCAGCAAAAGCATCTACCGACCAGTTCAAGTGCGGGCGGTGTGGTCAACGCAAATGCAC 1198
Query 1211 CTACTATCAGATGCAAACAAGAAGTGCTGATGAGCCAATGACGACTTATGTTACATGTGT 1270
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1199 CTACTATCAGATGCAAACAAGAAGTGCTGATGAGCCAATGACGACCTATGTTACATGTGT 1258
Query 1271 TAACTGTGACAACCACTGGAAGTTCTGTTGAGGAGATCTCTGTGT--CTTT-TATTTCAT 1327
||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||
Sbjct 1259 TAACTGTGACAACCACTGGAAGTTCTGTTAAGGAGATCTCTGTGTGTCTTTGTATTTCAT 1318
Query 1328 GAGACCATGTTAAGACATAGAGGCTCTGATTGATTAATCAGGAGCTTCGTGTCCATTTGC 1387
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1319 GAGACCATGTTAAGACATAGAGGCTCTGATTGATTAATCAGGAGCTTCATGTCCATTTGC 1378
Query 1388 TAGCAGCATTCC-TAGAATGCTCTGGCTCCGATGTTTGTTT-AAGGATATCATTCAATGT 1445
|| |||||| | ||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 1379 ---CATCATTCCGT-GAATGTTCCGGCTCCGATGTTTGTTTTAAGGATATCATTCAATGT 1434
Query 1446 CTTAGAGATTAGTAAGTAGGGGTATTTACTAATTTAGGTGTTTGTAGTTCTTATTTCTTT 1505
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1435 CTTAGAGATTAGTAAGTAGGGGTATTTACTAATTTAGGTGTTTGTAGCTCTTATTTCTTT 1494
Query 1506 TGCTTCTCTTCTTCCAAACTGTCAACTCAACTTTCTTGCAGATTTTACCAAATTTTGAAG 1565
|| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1495 TGATTCTCTTCTTCCAAACTGTCAACTCAACTTTCCTGCAGATTTTACCAAGTTTTGAAG 1554
Query 1566 ttttttt 1572
||| |||
Sbjct 1555 TTTATTT 1561
> Ahg934563 jgi|Araly1|934563|scaffold_402551.1
Length=364
Score = 542 bits (293), Expect = 4e-153
Identities = 323/338 (96%), Gaps = 0/338 (0%)
Strand=Plus/Plus
Query 978 ATGTTCAACCTGAGGGATAGTAACAACCCGGACTTAAGAAGGAGGGTTCTCACTGGGGAG 1037
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 21 ATGTTCAACCTGAGGGACGGTAACAACCCGGACTTAAGAAGGAGGGTTCTCACCGGGGAG 80
Query 1038 ATTTCACCAGAGAAACTCATAACATTGTCTGCCGAAGATATGGCAAGTGACAAGAGGAAA 1097
|||||||| ||||||||||| ||||||||||| ||||| |||||||| ||||||||||||
Sbjct 81 ATTTCACCGGAGAAACTCATCACATTGTCTGCTGAAGAAATGGCAAGCGACAAGAGGAAA 140
Query 1098 CAAGAGAACAACCAGATCAAAGAGAAAGCCCTGTTTGATTGTGAGCGTGGTCTTGCTGCA 1157
||||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 141 CAAGAGAACAATCAAATCAAAGAGAAAGCCCTGTTTGATTGCGAGCGTGGTCTTGCAGCA 200
Query 1158 AAAGCATCTACCGACCAGTTCAAGTGCGGGCGGTGTGGTCAGCGCAAATGCACCTACTAT 1217
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 201 AAAGCATCTACCGACCAGTTCAAGTGCGGGCGGTGTGGTCAACGCAAATGCACCTACTAT 260
Query 1218 CAGATGCAAACAAGAAGTGCTGATGAGCCAATGACGACTTATGTTACATGTGTTAACTGT 1277
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 261 CAGATGCAAACAAGAAGTGCTGATGAGCCAATGACGACCTATGTTACATGTGTTAACTGT 320
Query 1278 GACAACCACTGGAAGTTCTGTTGAGGAGATCTCTGTGT 1315
|||||||||||||||||||||| |||||||||||||||
Sbjct 321 GACAACCACTGGAAGTTCTGTTAAGGAGATCTCTGTGT 358
> Ahg952169 jgi|Araly1|952169|scaffold_43300001.1
Length=364
Score = 531 bits (287), Expect = 8e-150
Identities = 321/338 (95%), Gaps = 0/338 (0%)
Strand=Plus/Plus
Query 978 ATGTTCAACCTGAGGGATAGTAACAACCCGGACTTAAGAAGGAGGGTTCTCACTGGGGAG 1037
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 21 ATGTTCAACCTGAGGGACGGTAACAACCCGGACTTAAGAAGGAGGGTTCTCACCGGGGAG 80
Query 1038 ATTTCACCAGAGAAACTCATAACATTGTCTGCCGAAGATATGGCAAGTGACAAGAGGAAA 1097
|||||||| ||||||||||| ||||||||||| ||||| |||||||| ||||||||||||
Sbjct 81 ATTTCACCGGAGAAACTCATCACATTGTCTGCTGAAGAAATGGCAAGCGACAAGAGGAAA 140
Query 1098 CAAGAGAACAACCAGATCAAAGAGAAAGCCCTGTTTGATTGTGAGCGTGGTCTTGCTGCA 1157
||||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 141 CAAGAGAACAATCATATCAAAGAGAAAGCCCTGTTTGATTGCGAGCGTGGTCTTGCAGCA 200
Query 1158 AAAGCATCTACCGACCAGTTCAAGTGCGGGCGGTGTGGTCAGCGCAAATGCACCTACTAT 1217
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 201 AAAGCATCTACCGAACAGTTCAAGTGCGGGCGGTGTGGTCAACGCAAATGCACCTACTAT 260
Query 1218 CAGATGCAAACAAGAAGTGCTGATGAGCCAATGACGACTTATGTTACATGTGTTAACTGT 1277
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 261 CAGATGCAAACAAGAAGTGCTGATGAGCCAATGACGACCTATGTTACATGTGTTAACTGT 320
Query 1278 GACAACCACTGGAAGTTCTGTTGAGGAGATCTCTGTGT 1315
|||||||||||||||||||||| ||||||||| |||||
Sbjct 321 GACAACCACTGGAAGTTCTGTTAAGGAGATCTTTGTGT 358
> Ahg345604 jgi|Araly1|345604|fgenesh1_pg.C_scaffold_4001946
Length=3081
Score = 296 bits (160), Expect = 3e-79
Identities = 176/183 (96%), Gaps = 3/183 (2%)
Strand=Plus/Minus
Query 1173 CAGTTCAAGTGCGGGCGGTGTGGTCAGCGCAAATGCACCTACTATCAGATGCAAACAAGA 1232
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2103 CAGTTCAAGTGCGGGCGGTGTGGTCAACGCAAATGCACCTACTATCAGATGCAAACAAGA 2044
Query 1233 AGTGCTGATGAGCCAATGACGACTTATGTTACATGTGTTAACTGTGACAACCACTGGAAG 1292
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2043 AGTGTTGATGAGCCAATGACGACCTATGTTACATGTGTTAACTGTGACAACCACTGGAAG 1984
Query 1293 TTCTGTTGAGGAGATCTCTGTGT--CTTT-TATTTCATGAGACCATGTTAAGACATAGAG 1349
||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1983 TTCTGTTAAGGAGATCTCTGTGTGTCTTTGTATTTCATGAGACCATGTTAAGACATAGAG 1924
Query 1350 GCT 1352
|||
Sbjct 1923 GCT 1921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62886994495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5