BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G38570.1 Length=1298 Score E Sequences producing significant alignments: (Bits) Value Ahg482866 jgi|Araly1|482866|fgenesh2_kg.4__1926__AT2G38570.1 1005 0.0 Ahg345604 jgi|Araly1|345604|fgenesh1_pg.C_scaffold_4001946 243 3e-63 Ahg934561 jgi|Araly1|934561|scaffold_402549.1 75.0 1e-12 > Ahg482866 jgi|Araly1|482866|fgenesh2_kg.4__1926__AT2G38570.1 Length=996 Score = 1005 bits (544), Expect = 0.0 Identities = 868/1017 (85%), Gaps = 51/1017 (5%) Strand=Plus/Plus Query 147 ATGTGCAATTGCTCATCTTCCTTC-T-TCTGTT-CTCTTCCAGTTCTCAATGCTCGATTG 203 |||||||||||||||||||||||| | || || ||||||| || |||||||||||| || Sbjct 1 ATGTGCAATTGCTCATCTTCCTTCGTCTCCCTTGCTCTTCCCGTCCTCAATGCTCGACTG 60 Query 204 GTGAAACCCAATTCAG-AAACTTGTCGATGGAGGCTCAAACGGATTCAGCATTCAATCCT 262 |||||||||||||||| ||| |||| |||||||||||| ||||||||| ||||| ||| | Sbjct 61 GTGAAACCCAATTCAGTAAA-TTGTAGATGGAGGCTCAGACGGATTCAACATTCGATCTT 119 Query 263 CAATTGCTTTTGGATTGATTCGAAAAACTCTCCCTTT--CTCGGGCAATTCAG-TTTTAT 319 ||||||| ||||| || | || | | ||| ||| || || | ||| | Sbjct 120 AAATTGCTCTTGGA-GGA-GAGCTCAA-TGTTATTTTGATTCGAATAACTCTGCCTTTCT 176 Query 320 AGAGAAACCGAG--AGACAATTTCATCTGTTGCTTGAGTTC-T--TCACTATCTAATGAA 374 | | || |||| | | || || ||| ||| |||||||| | |||||| |||||||| Sbjct 177 CGGGCAATCGAGCAATAGAA--TCGTCTTTTGTTTGAGTTCATCATCACTACCTAATGAA 234 Query 375 GAAGATGTAGTGCATCAAACTGTGGGGAGTGATAGTGTAGAATTACCTGGAGAAAGTGAT 434 |||||||||||||||||||| |||| |||||||||| ||| ||||||||||||||| || Sbjct 235 GAAGATGTAGTGCATCAAACAGTGGAAAGTGATAGTGCAGAGTTACCTGGAGAAAGTTAT 294 Query 435 TTGGTTCGACTAGTAGGTGATAATGATCTGAGC-ATTACGGGTTCGCGAGGATTCAAGCA 493 ||| ||||||||||||||||||||||||| | | | || || || ||||||||| || Sbjct 295 TTGATTCGACTAGTAGGTGATAATGATCTTA-CTAACACTGGCTCTAAAGGATTCAAACA 353 Query 494 GTCGACGACAAGATCGAATCTTGTTGCTAAGCAAGTTGTTAGTATACAATCAGCTTTGAG 553 | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 354 GACGACGACAAGATCGAATCTTGTTGCTAAGCAAGTTATTAGTATACAATCAGCTCTGAG 413 Query 554 TTTAGGATTTATCTCTCAGCTTTGGGTTGACACTACTTCTTGGTTGGTTTTGGTGGTTGA 613 |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 414 TTTAGGATTTATCTCTCAGCTTTGGGTTGACACTTCTTCCTGGTTGGTTTTGGTGGTTGA 473 Query 614 TGTTAAACCAAGCTTGCTATCTGGAGAATCTGAGAGATTTCTGCTCACAGACATTGTCCG 673 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 474 TGTTAAACCAAGCTTGTTATCTGGAGAATCTGAGAGATTTCTGCTCAAAGACATTGTCCG 533 Query 674 GG---TG-GGTG-AT-G-TTGTCCT-TGTTGATAATGAGACTGTC--TTGGATACTG-AA 722 || || || | | || |||| |||||| || | | | || ||||| | || Sbjct 534 GGTACTGCTATGTTTGGTTTCTCCTATGTTGA-AA-GTG-GTTTCATTTGGA-AATGTGT 589 Query 723 TT-C-AAGATGGTT-GGACTT-GA--AACACTGGTAGGTTACAGAGTAGTTACACCAGGA 776 || | | || || || || | || | | | ||||||||||||| ||||||||| Sbjct 590 TTACTTACAT-CTTAGGGTTTATATTAAGA-T-CTCTGTTACAGAGTAGTGACACCAGGA 646 Query 777 GGGAGAAACATTGGAAAGGTTCGAGGTTACTCATTCAACATTAACTCGGGAATAGTTGAA 836 || |||||||||| || |||||||||||| |||||||||||||||||||||||| Sbjct 647 CGGCGAAACATTGG-AA------AGGTTACTCATTTAACATTAACTCGGGAATAGTTGAA 699 Query 837 TCGCTTGAGCTCGATTCCTTCGGGGTAACTATTATACCATCAAGCCTGGTGAGTACATAC 896 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 700 TCGCTTGAGCTCGATTCCTTCGGGGTAACTATCATACCATCAAGCCTGGTGAGTACATAC 759 Query 897 AGATTAGATGTCGAGGATATAATCGAGGTCTTACAAGATATAGTTGTGGTTCAAGAAGAT 956 ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 760 AGATTAGGTGTCGAGGACATAATCGAGGTCTTACAAGATATAGTTGTGGTTCACGAAGAT 819 Query 957 GCAGCTTCTAGAAAACAGAGGTTGACTAAGGGACTCTGGGATGCTCAGTTTGATAGTGAA 1016 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 820 GCAGCTTCTAGAAAACAGAGGTTGACTAAGGGACTCTGGGATGGTCAGTTTGATAGTGAA 879 Query 1017 TACCCTGATGTTGAAGATCTTGAAAGTTCATCTGATAGAAGACGGCGAAGGAGAAACAAT 1076 ||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 880 TACTCTGATGTTGAAGAGCTTGAAAGTTCATCTGATAGGAGACGGCGAAGGAGAAACAAT 939 Query 1077 CGATCCAACCGAAAAAAGAGAGATTTGGATGATGAAGAATGGGACATATTCCGCTAG 1133 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 940 AGATCCAACCGAAAGAAGAGAGATTTGGATGATGACGAATGGGACATATTCCGCTAG 996 > Ahg345604 jgi|Araly1|345604|fgenesh1_pg.C_scaffold_4001946 Length=3081 Score = 243 bits (131), Expect = 3e-63 Identities = 215/254 (85%), Gaps = 11/254 (4%) Strand=Plus/Plus Query 343 TCTGTTGCTTGAGTTC-T--TCACTATCTAATGAAGAAGATGTAGTGCATCAAACTGTGG 399 ||| ||| |||||||| | |||||| |||||||||||||||||||||||||||| |||| Sbjct 1673 TCTTTTGTTTGAGTTCATCATCACTACCTAATGAAGAAGATGTAGTGCATCAAACAGTGG 1732 Query 400 GGAGTGATAGTGTAGAATTACCTGGAGAAAGTGATTTGGTTCGACTAGTAGGTGATAATG 459 ||||||||| ||||||||||||||||| ||||||| ||||| |||| |||||||||| Sbjct 1733 AAAGTGATAGTCCAGAATTACCTGGAGAAAATGATTTGATTCGAGTAGTTGGTGATAATG 1792 Query 460 ATCTGAGCATTACGGGTTCGCGAGGATTCAAGCAGTCGACGACAAGATCGAATCTTGTTG 519 ||||||| | || || ||| ||| ||||| ||| |||||||||||||||||||||||| Sbjct 1793 ATCTGAGTAACACTGGCTCGAAAGGTTTCAAACAGACGACGACAAGATCGAATCTTGTTG 1852 Query 520 CTAAGCAAGTTGTTAGTATACAATCAGCTTTG-AGTTTAGGATTTATCTCTCAGCTTTGG 578 |||| |||||| ||||||| ||||||||| || | | |||||||| |||||| | || Sbjct 1853 CTAAACAAGTTTTTAGTATGCAATCAGCTCTGCA-TCTAGGATTTGTCTCTC-G----GG 1906 Query 579 GTTGACACTACTTC 592 ||||||||||||| Sbjct 1907 -TTGACACTACTTC 1919 > Ahg934561 jgi|Araly1|934561|scaffold_402549.1 Length=216 Score = 75.0 bits (40), Expect = 1e-12 Identities = 57/64 (89%), Gaps = 5/64 (8%) Strand=Plus/Minus Query 140 TTT-AGAAATGTGCAATTGCTCATCTTCCTTCTTCTGT-TCTCTTCC-AGTTCTCAATGC 196 ||| ||| |||||||||||||||||||||||||||| | |||||||| | | |||||||| Sbjct 212 TTTAAGATATGTGCAATTGCTCATCTTCCTTCTTCT-TCTCTCTTCCCA-TCCTCAATGC 155 Query 197 TCGA 200 |||| Sbjct 154 TCGA 151 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48530473341 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5