BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38570.1
Length=1298
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482866 jgi|Araly1|482866|fgenesh2_kg.4__1926__AT2G38570.1 1005 0.0
Ahg345604 jgi|Araly1|345604|fgenesh1_pg.C_scaffold_4001946 243 3e-63
Ahg934561 jgi|Araly1|934561|scaffold_402549.1 75.0 1e-12
> Ahg482866 jgi|Araly1|482866|fgenesh2_kg.4__1926__AT2G38570.1
Length=996
Score = 1005 bits (544), Expect = 0.0
Identities = 868/1017 (85%), Gaps = 51/1017 (5%)
Strand=Plus/Plus
Query 147 ATGTGCAATTGCTCATCTTCCTTC-T-TCTGTT-CTCTTCCAGTTCTCAATGCTCGATTG 203
|||||||||||||||||||||||| | || || ||||||| || |||||||||||| ||
Sbjct 1 ATGTGCAATTGCTCATCTTCCTTCGTCTCCCTTGCTCTTCCCGTCCTCAATGCTCGACTG 60
Query 204 GTGAAACCCAATTCAG-AAACTTGTCGATGGAGGCTCAAACGGATTCAGCATTCAATCCT 262
|||||||||||||||| ||| |||| |||||||||||| ||||||||| ||||| ||| |
Sbjct 61 GTGAAACCCAATTCAGTAAA-TTGTAGATGGAGGCTCAGACGGATTCAACATTCGATCTT 119
Query 263 CAATTGCTTTTGGATTGATTCGAAAAACTCTCCCTTT--CTCGGGCAATTCAG-TTTTAT 319
||||||| ||||| || | || | | ||| ||| || || | ||| |
Sbjct 120 AAATTGCTCTTGGA-GGA-GAGCTCAA-TGTTATTTTGATTCGAATAACTCTGCCTTTCT 176
Query 320 AGAGAAACCGAG--AGACAATTTCATCTGTTGCTTGAGTTC-T--TCACTATCTAATGAA 374
| | || |||| | | || || ||| ||| |||||||| | |||||| ||||||||
Sbjct 177 CGGGCAATCGAGCAATAGAA--TCGTCTTTTGTTTGAGTTCATCATCACTACCTAATGAA 234
Query 375 GAAGATGTAGTGCATCAAACTGTGGGGAGTGATAGTGTAGAATTACCTGGAGAAAGTGAT 434
|||||||||||||||||||| |||| |||||||||| ||| ||||||||||||||| ||
Sbjct 235 GAAGATGTAGTGCATCAAACAGTGGAAAGTGATAGTGCAGAGTTACCTGGAGAAAGTTAT 294
Query 435 TTGGTTCGACTAGTAGGTGATAATGATCTGAGC-ATTACGGGTTCGCGAGGATTCAAGCA 493
||| ||||||||||||||||||||||||| | | | || || || ||||||||| ||
Sbjct 295 TTGATTCGACTAGTAGGTGATAATGATCTTA-CTAACACTGGCTCTAAAGGATTCAAACA 353
Query 494 GTCGACGACAAGATCGAATCTTGTTGCTAAGCAAGTTGTTAGTATACAATCAGCTTTGAG 553
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 354 GACGACGACAAGATCGAATCTTGTTGCTAAGCAAGTTATTAGTATACAATCAGCTCTGAG 413
Query 554 TTTAGGATTTATCTCTCAGCTTTGGGTTGACACTACTTCTTGGTTGGTTTTGGTGGTTGA 613
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 414 TTTAGGATTTATCTCTCAGCTTTGGGTTGACACTTCTTCCTGGTTGGTTTTGGTGGTTGA 473
Query 614 TGTTAAACCAAGCTTGCTATCTGGAGAATCTGAGAGATTTCTGCTCACAGACATTGTCCG 673
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 474 TGTTAAACCAAGCTTGTTATCTGGAGAATCTGAGAGATTTCTGCTCAAAGACATTGTCCG 533
Query 674 GG---TG-GGTG-AT-G-TTGTCCT-TGTTGATAATGAGACTGTC--TTGGATACTG-AA 722
|| || || | | || |||| |||||| || | | | || ||||| | ||
Sbjct 534 GGTACTGCTATGTTTGGTTTCTCCTATGTTGA-AA-GTG-GTTTCATTTGGA-AATGTGT 589
Query 723 TT-C-AAGATGGTT-GGACTT-GA--AACACTGGTAGGTTACAGAGTAGTTACACCAGGA 776
|| | | || || || || | || | | | ||||||||||||| |||||||||
Sbjct 590 TTACTTACAT-CTTAGGGTTTATATTAAGA-T-CTCTGTTACAGAGTAGTGACACCAGGA 646
Query 777 GGGAGAAACATTGGAAAGGTTCGAGGTTACTCATTCAACATTAACTCGGGAATAGTTGAA 836
|| |||||||||| || |||||||||||| ||||||||||||||||||||||||
Sbjct 647 CGGCGAAACATTGG-AA------AGGTTACTCATTTAACATTAACTCGGGAATAGTTGAA 699
Query 837 TCGCTTGAGCTCGATTCCTTCGGGGTAACTATTATACCATCAAGCCTGGTGAGTACATAC 896
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 700 TCGCTTGAGCTCGATTCCTTCGGGGTAACTATCATACCATCAAGCCTGGTGAGTACATAC 759
Query 897 AGATTAGATGTCGAGGATATAATCGAGGTCTTACAAGATATAGTTGTGGTTCAAGAAGAT 956
||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 760 AGATTAGGTGTCGAGGACATAATCGAGGTCTTACAAGATATAGTTGTGGTTCACGAAGAT 819
Query 957 GCAGCTTCTAGAAAACAGAGGTTGACTAAGGGACTCTGGGATGCTCAGTTTGATAGTGAA 1016
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 820 GCAGCTTCTAGAAAACAGAGGTTGACTAAGGGACTCTGGGATGGTCAGTTTGATAGTGAA 879
Query 1017 TACCCTGATGTTGAAGATCTTGAAAGTTCATCTGATAGAAGACGGCGAAGGAGAAACAAT 1076
||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 880 TACTCTGATGTTGAAGAGCTTGAAAGTTCATCTGATAGGAGACGGCGAAGGAGAAACAAT 939
Query 1077 CGATCCAACCGAAAAAAGAGAGATTTGGATGATGAAGAATGGGACATATTCCGCTAG 1133
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 940 AGATCCAACCGAAAGAAGAGAGATTTGGATGATGACGAATGGGACATATTCCGCTAG 996
> Ahg345604 jgi|Araly1|345604|fgenesh1_pg.C_scaffold_4001946
Length=3081
Score = 243 bits (131), Expect = 3e-63
Identities = 215/254 (85%), Gaps = 11/254 (4%)
Strand=Plus/Plus
Query 343 TCTGTTGCTTGAGTTC-T--TCACTATCTAATGAAGAAGATGTAGTGCATCAAACTGTGG 399
||| ||| |||||||| | |||||| |||||||||||||||||||||||||||| ||||
Sbjct 1673 TCTTTTGTTTGAGTTCATCATCACTACCTAATGAAGAAGATGTAGTGCATCAAACAGTGG 1732
Query 400 GGAGTGATAGTGTAGAATTACCTGGAGAAAGTGATTTGGTTCGACTAGTAGGTGATAATG 459
||||||||| ||||||||||||||||| ||||||| ||||| |||| ||||||||||
Sbjct 1733 AAAGTGATAGTCCAGAATTACCTGGAGAAAATGATTTGATTCGAGTAGTTGGTGATAATG 1792
Query 460 ATCTGAGCATTACGGGTTCGCGAGGATTCAAGCAGTCGACGACAAGATCGAATCTTGTTG 519
||||||| | || || ||| ||| ||||| ||| ||||||||||||||||||||||||
Sbjct 1793 ATCTGAGTAACACTGGCTCGAAAGGTTTCAAACAGACGACGACAAGATCGAATCTTGTTG 1852
Query 520 CTAAGCAAGTTGTTAGTATACAATCAGCTTTG-AGTTTAGGATTTATCTCTCAGCTTTGG 578
|||| |||||| ||||||| ||||||||| || | | |||||||| |||||| | ||
Sbjct 1853 CTAAACAAGTTTTTAGTATGCAATCAGCTCTGCA-TCTAGGATTTGTCTCTC-G----GG 1906
Query 579 GTTGACACTACTTC 592
|||||||||||||
Sbjct 1907 -TTGACACTACTTC 1919
> Ahg934561 jgi|Araly1|934561|scaffold_402549.1
Length=216
Score = 75.0 bits (40), Expect = 1e-12
Identities = 57/64 (89%), Gaps = 5/64 (8%)
Strand=Plus/Minus
Query 140 TTT-AGAAATGTGCAATTGCTCATCTTCCTTCTTCTGT-TCTCTTCC-AGTTCTCAATGC 196
||| ||| |||||||||||||||||||||||||||| | |||||||| | | ||||||||
Sbjct 212 TTTAAGATATGTGCAATTGCTCATCTTCCTTCTTCT-TCTCTCTTCCCA-TCCTCAATGC 155
Query 197 TCGA 200
||||
Sbjct 154 TCGA 151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48530473341
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5