BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38580.1
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345641 jgi|Araly1|345641|fgenesh1_pg.C_scaffold_4001983 1690 0.0
Ahg901742 jgi|Araly1|901742|Al_scaffold_0004_2392 172 6e-42
Ahg901740 jgi|Araly1|901740|Al_scaffold_0004_2390 172 6e-42
Ahg934561 jgi|Araly1|934561|scaffold_402549.1 167 3e-40
> Ahg345641 jgi|Araly1|345641|fgenesh1_pg.C_scaffold_4001983
Length=1530
Score = 1690 bits (915), Expect = 0.0
Identities = 1148/1256 (91%), Gaps = 34/1256 (3%)
Strand=Plus/Plus
Query 310 GAAGATGATTCTGGTGTTGAGAACAAGTCTCAGGGAAGTGAGGTGCTGTTGGAAGAAACA 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGATGATTCTGGTGTTGAGAACAAGTCTCAGGGAAGTGAGGTGCTGTTGGAAGAAACA 360
Query 370 ATTAAACAGTTACGTGAGGAAAATGGTTCCTACCTTCAGAAAGAGGC-TGGTTTT-GAAG 427
|| |||||||||||||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 361 ATCAAACAGTTACGTGAGGAAAATGGTTCCTACCTTCAGAAAGAGGCAT--TTTTAGAAG 418
Query 428 AAAATG-TTAGACGC-TTGGAAACC-GAGAATGAAGCTCACATTCAGAAA-GAGGCATTG 483
||| | || | || || |||| | ||||||||||||||||| || ||| |||||| ||
Sbjct 419 AAAG-GCTT-GT-GCATTTGAAAACAGAGAATGAAGCTCACATACA-AAATGAGGCACTG 474
Query 484 TTAGAAGAAAGGCT-TGTACATTTGAAAACAGAGAATGAAGCTCACGTACATAATGAGGC 542
|| ||||||| ||| | | ||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 475 TTGGAAGAAAAGCTCT-TGCATTTGAGAACAGAGAATGAAGCTCACACACAAAATGAGGC 533
Query 543 ACTGTTAGAAGGAAAGCTCTTGCATTTGAGAACAGAGAATGAAGATCACATACAGAATGA 602
| ||||||||| ||||||||| |||||||||||||||||||||| ||||||||| |||||
Sbjct 534 ATTGTTAGAAGAAAAGCTCTTACATTTGAGAACAGAGAATGAAGCTCACATACAAAATGA 593
Query 603 GGCACTGTTAGAAGAAAAGCTCTTGCATTTGAGAACAGAGAATGAAGCTCACATACAAAA 662
||||| ||| ||||||| |||||| ||||||||||| || ||||||||||||| ||||||
Sbjct 594 GGCACGGTTGGAAGAAAGGCTCTTACATTTGAGAACTGAAAATGAAGCTCACAAACAAAA 653
Query 663 TGAGGCACTGTTGGAAGAAAGGCTCTTACATTTTAGAACTGAAAAT-GAAGCTCACAAAC 721
|| | | | | | ||| | | | | | | || | || || | | | | |
Sbjct 654 CGAAG-A-TCATCTA-GAA-G--T-TGG-AGGTCAAAA-T-AACATTGTATTT-ATG--C 700
Query 722 AAAACGAAGAAAAGTTGGAGGAAAGACTTGTGCAGTATAAAAACAAGAACGACATGCTTC 781
| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 AG---GAA-AA--GTTGGAGGAAAGACTTGTGCAGTATAAAAACAAGAACGACATGCTTC 754
Query 782 TTCGTGAAATGTCTAGCACAGAAGCCCAGATGAGACAATTGCTAGATGAAAGATCTACCT 841
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 TTCGCGAAATGTCTAGTACAGAAGCCCAGATGAGACAATTGCTAGATGAAAGATCTACCT 814
Query 842 TCACTCAGAAAGAGGCGAGTCTAGAAAAGAAAGTTCAACAACTTCAACACGATGAAGAAT 901
| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 815 TTACTCAGAAAGAGGCGAGTCTAGAAAAGAAAGTTCAACAACATCAACATGATGAAGAAT 874
Query 902 CCTTGGTGGCTGAGGAGAAGTCATCCAGAGAAATGATATCTAGCCTTAACAATGAAATTG 961
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 875 CCTTCGTGGCTGAGGAGAAGTCATCCAGAGAAATGATATCTAGCCTGAACAATGAAATTG 934
Query 962 CAAGGCTGCGAGCACAGGTTACGGAGTTGGAAAAATCTAAGAGTAATCTTCTAGAGCAGA 1021
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 935 CAAGGCTACGAGCACAGGTTACGGAGTTGGAAGAATCTAAGAGTAATCTTCTAGAGCAGA 994
Query 1022 ATCAGAGTCTTAAGGAAACTATATCCAATCTTCAAGTCCAGCATGAAAACCATGATAGTA 1081
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 995 ATCAGAGTCTTAAGGAAACTGTATCCAGTCTTCAAGTCCAGCATGAAAACCATGATAGTA 1054
Query 1082 ACGCAAAGGGTGCTTCTGAGGAAGAATTAAACTCACAGATTGAAGCAGCTTGTACTCTAG 1141
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1055 ACGCAAAGGGTGCTTCTGAGGAAGAATTAAACTCTCAGATTGAAGCAGCTTGTACTCTAG 1114
Query 1142 TTGAAAAGCTTATCACTGAAAATGCTGATCTAGTTGAAAAGGTGAACGAATTGTGTATTA 1201
| |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 1115 TGGAAAAGCTTATCACTGAAAATGCTGAACTTGTTGAAAAGGTGAACGAGCTGTGTATTA 1174
Query 1202 AGCTAAACCAATCACAGCATGCTTCCCCTGAGAGCCTAGCAATTGAAGTAGAGAAATCTG 1261
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1175 AGCTAAACCAGTCGCAGCATGCTTCCCCTGAGAGCCTAGCAATTGAAGTAGAGAAGTCTG 1234
Query 1262 AATCCTTAGAAGAAATACCCATACACGACGAGTTGATTAGAATTGATAACTCTAGGGACA 1321
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1235 AATCCTTAGAAGAAATACCCATACACGACGAGTTGATTAGAATTGATAACTCTAAGGACA 1294
Query 1322 TGGATACTGCATCAATAAAGAGAAACTTTTCAGAAGGTGAAATAGAAGAAACGGTGCCGC 1381
|||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1295 TGGATACTGCATTGATAAAGAGAAACTTGTCAGAAGGCGAAATAGAAGAAACGGTGCCGC 1354
Query 1382 TCTCTCTGAACGCGAATGGGGAAGTAGACGTGGAATCACAGGTTGCAGTAGCTGGAGAAG 1441
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1355 TCTCTCTGAACGCGAATGGGGAAGTAGACGTGGAATCACAGGTTGTAGTAGCTGGAGAAG 1414
Query 1442 ACGAAATAAATGCTGGTGTGCCTCTGGCGGACGCTCCACTTATCGGTGCTCCATTCAGGC 1501
||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1415 ACGAAGTAATTGCTGGTGTGCCTCTGGCGGACGCTCCACTTATCGGTGCTCCCTTCAGGC 1474
Query 1502 TCGTCTCGTTTGTAGCAAGATACGTGAGTGGTGCAGATTTGGCGGCAAAGAAATAG 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 TCGTCTCGTTTGTAGCAAGATACGTGAGTGGTGCAGATTTGGCGGCAAAGAAATAG 1530
Score = 418 bits (226), Expect = 7e-116
Identities = 252/265 (95%), Gaps = 0/265 (0%)
Strand=Plus/Plus
Query 467 TTCAGAAAGAGGCATTGTTAGAAGAAAGGCTTGTACATTTGAAAACAGAGAATGAAGCTC 526
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 395 TTCAGAAAGAGGCATTTTTAGAAGAAAGGCTTGTGCATTTGAAAACAGAGAATGAAGCTC 454
Query 527 ACGTACATAATGAGGCACTGTTAGAAGGAAAGCTCTTGCATTTGAGAACAGAGAATGAAG 586
|| |||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 455 ACATACAAAATGAGGCACTGTTGGAAGAAAAGCTCTTGCATTTGAGAACAGAGAATGAAG 514
Query 587 ATCACATACAGAATGAGGCACTGTTAGAAGAAAAGCTCTTGCATTTGAGAACAGAGAATG 646
||||| ||| ||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 515 CTCACACACAAAATGAGGCATTGTTAGAAGAAAAGCTCTTACATTTGAGAACAGAGAATG 574
Query 647 AAGCTCACATACAAAATGAGGCACTGTTGGAAGAAAGGCTCTTACATTTTAGAACTGAAA 706
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 575 AAGCTCACATACAAAATGAGGCACGGTTGGAAGAAAGGCTCTTACATTTGAGAACTGAAA 634
Query 707 ATGAAGCTCACAAACAAAACGAAGA 731
|||||||||||||||||||||||||
Sbjct 635 ATGAAGCTCACAAACAAAACGAAGA 659
Score = 316 bits (171), Expect = 3e-85
Identities = 192/202 (95%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 109 ATGgaagacgacaagaagaagaagagaaacaagaaaaagaagaataagcagaaTAATAAA 168
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGGAAGACGACAAGAAGAAGAAGAGAAACAAGAAAAAGAAGAATAAGCTGAATAATAAA 60
Query 169 CGTGTTGACGACGCTTTAGCTTCTGGTGCAACGACCTCCG-TCGATGAAAATCATATCGG 227
||||||||||||||| ||||||| ||||||||||||| || | |||||||||||||||||
Sbjct 61 CGTGTTGACGACGCTATAGCTTCCGGTGCAACGACCTTCGCT-GATGAAAATCATATCGG 119
Query 228 AGATGGTGACGTTCCTCAAATTAGCGGAGGTCCAGATGCCGATGAGTCGCAATCATCTCA 287
|||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 120 AGATGGTGACGTTCCTCAAATTAGCGAACGTCCAGATGTCGATGAGTCGCAATCATCTCA 179
Query 288 TCAGATCGATGTCGTCGCAACT 309
||||||| ||||||||||||||
Sbjct 180 TCAGATCAATGTCGTCGCAACT 201
Score = 254 bits (137), Expect = 2e-66
Identities = 187/211 (89%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 538 GAGGCACTGTTAGAAGGAAA-GCTCT-TGCATTTGAGAACAGAGAATGAAGATCACATAC 595
|||||| | |||||| |||| ||| | ||||||||| |||||||||||||| ||||||||
Sbjct 403 GAGGCATTTTTAGAA-GAAAGGCT-TGTGCATTTGAAAACAGAGAATGAAGCTCACATAC 460
Query 596 AGAATGAGGCACTGTTAGAAGAAAAGCTCTTGCATTTGAGAACAGAGAATGAAGCTCACA 655
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 AAAATGAGGCACTGTTGGAAGAAAAGCTCTTGCATTTGAGAACAGAGAATGAAGCTCACA 520
Query 656 TACAAAATGAGGCACTGTTGGAAGAAAGGCTCTTACATTTTAGAACTGAAAATGAAGCTC 715
||||||||||||| |||| ||||||| |||||||||||| ||||| || ||||||||||
Sbjct 521 CACAAAATGAGGCATTGTTAGAAGAAAAGCTCTTACATTTGAGAACAGAGAATGAAGCTC 580
Query 716 ACAAACAAAACGAAGAAAAGTTGGAGGAAAG 746
||| |||||| || | | |||||| |||||
Sbjct 581 ACATACAAAATGAGGCACGGTTGGAAGAAAG 611
Score = 171 bits (92), Expect = 2e-41
Identities = 119/132 (90%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 595 CAGAATGAGGCACTGTTAGAAGAAAAGCTCT-TGCATTTGAGAACAGAGAATGAAGCTCA 653
||||| |||||| | |||||||||| ||| | ||||||||| ||||||||||||||||||
Sbjct 397 CAGAAAGAGGCATTTTTAGAAGAAAGGCT-TGTGCATTTGAAAACAGAGAATGAAGCTCA 455
Query 654 CATACAAAATGAGGCACTGTTGGAAGAAAGGCTCTTACATTTTAGAACTGAAAATGAAGC 713
||||||||||||||||||||||||||||| |||||| ||||| ||||| || ||||||||
Sbjct 456 CATACAAAATGAGGCACTGTTGGAAGAAAAGCTCTTGCATTTGAGAACAGAGAATGAAGC 515
Query 714 TCACAAACAAAA 725
||||| ||||||
Sbjct 516 TCACACACAAAA 527
> Ahg901742 jgi|Araly1|901742|Al_scaffold_0004_2392
Length=282
Score = 172 bits (93), Expect = 6e-42
Identities = 103/108 (95%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 205 TCCGTCGATGAAAATCATATCGGAGATGGTGACGTTCCTCAAATTAGCGGAGGTCCAGAT 264
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 22 TCCGCCGATGAAAATCATATCGGAGATGGTGACGTTCCTCCAATTACCGGAGGTCCAGAT 81
Query 265 GCCGATGAGTCGCAATCATCTCATCAGATCGATGTCGTCGCAACTGAA 312
| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 82 GTCGATGAGTCGCAATCATCTCATCAGATCAATGTCGTCGCAACTGAA 129
> Ahg901740 jgi|Araly1|901740|Al_scaffold_0004_2390
Length=282
Score = 172 bits (93), Expect = 6e-42
Identities = 103/108 (95%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 205 TCCGTCGATGAAAATCATATCGGAGATGGTGACGTTCCTCAAATTAGCGGAGGTCCAGAT 264
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 22 TCCGCCGATGAAAATCATATCGGAGATGGTGACGTTCCTCCAATTACCGGAGGTCCAGAT 81
Query 265 GCCGATGAGTCGCAATCATCTCATCAGATCGATGTCGTCGCAACTGAA 312
| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 82 GTCGATGAGTCGCAATCATCTCATCAGATCAATGTCGTCGCAACTGAA 129
> Ahg934561 jgi|Araly1|934561|scaffold_402549.1
Length=216
Score = 167 bits (90), Expect = 3e-40
Identities = 100/105 (95%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 205 TCCGTCGATGAAAATCATATCGGAGATGGTGACGTTCCTCAAATTAGCGGAGGTCCAGAT 264
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 46 TCCGCCGATGAAAATCATATCGGAGATGGTGACGTTCCTCCAATTACCGGAGGTCCAGAT 105
Query 265 GCCGATGAGTCGCAATCATCTCATCAGATCGATGTCGTCGCAACT 309
| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 106 GTCGATGAGTCGCAATCATCTCATCAGATCAATGTCGTCGCAACT 150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66581748260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5