BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38590.1
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934582 jgi|Araly1|934582|scaffold_402570.1 1033 0.0
Ahg345624 jgi|Araly1|345624|fgenesh1_pg.C_scaffold_4001966 553 1e-156
Ahg482868 jgi|Araly1|482868|fgenesh2_kg.4__1928__AT2G38590.1 551 5e-156
Ahg947570 jgi|Araly1|947570|scaffold_703799.1 353 1e-96
Ahg934583 jgi|Araly1|934583|scaffold_402571.1 294 9e-79
Ahg905807 jgi|Araly1|905807|Al_scaffold_0003_2935 246 3e-64
Ahg340580 jgi|Araly1|340580|fgenesh1_pg.C_scaffold_3000343 246 3e-64
Ahg345622 jgi|Araly1|345622|fgenesh1_pg.C_scaffold_4001964 137 2e-31
Ahg925199 jgi|Araly1|925199|scaffold_200760.1 75.0 1e-12
> Ahg934582 jgi|Araly1|934582|scaffold_402570.1
Length=1276
Score = 1033 bits (559), Expect = 0.0
Identities = 856/996 (86%), Gaps = 34/996 (3%)
Strand=Plus/Plus
Query 279 ATCTATAGCGTTTAAACGTCAACCTATTTTCCTTGATGAACAAGTCAAGATATCTCAAGT 338
||||||||||||||||||| |||||| ||||||||| |||||||||||| ||||||||||
Sbjct 269 ATCTATAGCGTTTAAACGTAAACCTAGTTTCCTTGAAGAACAAGTCAAGGTATCTCAAGT 328
Query 339 TTTTCACTGTGAAGGTTTATTGTTATGCTTCTTAAAAGAAGACGATAC-AAGGGTTGTCG 397
||||||||||| ||||||||| ||||| |||| | ||||| |||| || |||||| |
Sbjct 329 CTTTCACTGTGAGGGTTTATTGCTATGCATCTT--CA-AAGACAATACTAA-GGTTGTGG 384
Query 398 TTTGGAATCCGTATTGCGGACAAACAAGGTGGATCCAACTC-AGATATTCTCACCGTCC- 455
||||||||||||||||||| |||||||||||||| ||| | |||| |||||| |||||
Sbjct 385 TTTGGAATCCGTATTGCGGGGAAACAAGGTGGATCGAAC-CAAGATTTTCTCATCGTCCA 443
Query 456 A--CACAAAGACAGGTTCATTTACGCTCTAGGATACAAGGATAAGGAATCTCGTGGTAGC 513
| |||||||||| ||| ||||||||||||||||||||||||||| ||| ||||
Sbjct 444 AGGGGGTGGGACAGGTTCAGTTATGCTCTAGGATACAAGGATAAGGAATCTTGTGATAGC 503
Query 514 TTCCAATTATTGAGGTTTGTAGATTATTTCCTAG--GAGCACCCAAAAATCAATATTTTT 571
|| |||| |||||||| |||||||||| || | |||||| ||||||||| |||||
Sbjct 504 TTTAAATTCTTGAGGTTCATAGATTATTT-CT-GCTTTGCACCCGAAAATCAATTTTTTT 561
Query 572 GGTATGAAATTTACGATTTTAACTCTGATTCATGGACAACTCTTGATGTCACTCCACACT 631
|||||||||| || |||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 562 GGTATGAAATCTATGATTTTGACTCTGATTCATGGACAACTCTTGATGTCACTCCAAACT 621
Query 632 GGTGTATATACTGTT-G-TGACCGTGGTGTTTCTCTCAACGGAAACACTTACTGGTGTGC 689
|||||||| | |||| | | ||| |||| || ||||||| ||||||||||||||||||||
Sbjct 622 GGTGTATA-A-TGTTTGCTAACCTTGGTATTACTCTCAAAGGAAACACTTACTGGTGTGC 679
Query 690 TAAAGAAAGGAAAGCAGAAGACGATATTGTCGATCACATCATATCTTTTGATTTTACAAA 749
| |||||||| ||||||| ||||||| ||||||||| || | ||||||||||||||
Sbjct 680 TGGGGAAAGGAACTCAGAAGATGATATTGCCGATCACATAATCTGTTTTGATTTTACAAG 739
Query 750 CGAGAGATTTGGGCCGCTTTTGCCTTTGCCGTCTAAG-GTTATGGAACATGAATATGAA- 807
|||||||||||| |||||||| ||| ||||| ||| | || | ||| ||||| ||||||
Sbjct 740 CGAGAGATTTGGACCGCTTTTACCTCTGCCGACTA-GCGTCAGGGATCATGAGTATGAAT 798
Query 808 ATTGTAACTTTATCTTATGTTAAAGAAGAGAAGCTTGCAGCTTTATTTCAGCATTACGAA 867
|| || |||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 799 AT-GTGACTTTATCTTGTGTTAGGGAAGAGAAGCTTGCAGCTTTATTTCAGCACAACGAA 857
Query 868 GCAGATTGGAATGAGTTTGATATATGGATTACGACTAAGATTGATGCTGAAGTGGTGTCG 927
|| || | ||||| |||| ||||||||||| ||| ||||| |||| ||| ||||||||
Sbjct 858 TCAAATCCGTATGAGCTTGAGATATGGATTACAACTGAGATTAATGCCGAAATGGTGTCG 917
Query 928 TGGAGCATGTTCTTGA-GAATGGATACGGGACCTAGGATAGAGGTTCCACATATATGTGA 986
||||||| |||||||| || ||||||| |||||||||||||||||||||| |||||| ||
Sbjct 918 TGGAGCAAGTTCTTGATGA-TGGATACCGGACCTAGGATAGAGGTTCCACTTATATGGGA 976
Query 987 AGGTTTCTTCATTGATGAGGAGAAGA-AAGTCGCCATGGGTTTTGAAGAAGACTTC-GAT 1044
||||||||||||||| |||||||||| || ||||||||||||||| ||||| ||| | |
Sbjct 977 AGGTTTCTTCATTGACGAGGAGAAGAGAAA-CGCCATGGGTTTTGACGAAGAGTTCAG-T 1034
Query 1045 CGCAAAACATTTATCATCATTGGAGAAGCTGGATACGTAAGAAAATTGGATATCAAAGCA 1104
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 1035 CGTAAAACATTTATCATCATTGGAGAGGCTGGATACGTAAGAAAATTGGATATTG--G-A 1091
Query 1105 CATGTAGACAGAAAATGTCGGCCAACTGTGTGTTCTTATGTTCCAAGTTTGGTCCAAATC 1164
||||||| | | ||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 1092 ---GTAGACATAGATTGTCGACCAAAAGTGTGCTCTTATGTTCCAAGTTTGGTCCAAATC 1148
Query 1165 AAGAAACCTGCACGAGGCAAAAGGAAAAGACAAAGCAGCTTAGAAAAGCGTCTATTTGAT 1224
|||||||||||| |||| |||||||||||||||||||||||||||| | ||||||||||
Sbjct 1149 AAGAAACCTGCAGGAGGAAAAAGGAAAAGACAAAGCAGCTTAGAAACGGGTCTATTTGAG 1208
Query 1225 CAAAACATGTTGAGACTTGAAGCATTTAAAAAGCTA 1260
||||||||||||||||||||||||||| ||||||||
Sbjct 1209 CAAAACATGTTGAGACTTGAAGCATTTGAAAAGCTA 1244
Score = 357 bits (193), Expect = 1e-97
Identities = 244/267 (91%), Gaps = 9/267 (3%)
Strand=Plus/Plus
Query 1 ATGACGACGATGATCTCTAATCTTCCAAGGGTTTTGATAGAGGAGAttttttttAGGGTT 60
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 21 ATGACGACGATGATCTCTAATCTTCCAACGGTTTTGATAGAGGAGATTTTAATTAGGGTT 80
Query 61 CCTTTGAAATCTTTGAGAGCAGTGAGATTAACTTGCAAAAGTTGGAACACTCTATCCAAA 120
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 81 CCTTTGAAATCTTTGAGAGCAGTGAGATTAACTTGCAAAATTTGGAACACTCTATCCAAT 140
Query 121 AGTAGGAGCTTTAGGAAGTTGTACATTAGTAAA--AG----AGCAACAAGAGAAGAGGAG 174
|||||||||||| ||||||||||||| ||||| || ||||||||||||||||||
Sbjct 141 AGTAGGAGCTTTCTGAAGTTGTACATTGGTAAACCAGCAACAGCAACAAGAGAAGAGGAT 200
Query 175 TCCATGATGATCGCTATGATGAATTTCGATCTTTATTCAATGAGGGTCGTAGTTGACGAC 234
|| |||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 201 TCTATGATGGTCGCGATGATGAATTTTGATCTTTATTCAATGAGGGTCGTAGTTGACGAC 260
Query 235 GACGTTGATCCATCTAAAGCGTTTaaa 261
| |||||||||||| ||||||||||
Sbjct 261 G---TTGATCCATCTATAGCGTTTAAA 284
> Ahg345624 jgi|Araly1|345624|fgenesh1_pg.C_scaffold_4001966
Length=2085
Score = 553 bits (299), Expect = 1e-156
Identities = 786/1005 (78%), Gaps = 98/1005 (10%)
Strand=Plus/Plus
Query 279 ATCTATAGCGTTTAAACGTCAACCTATTTTCCTTGATGAAC-AAGTCAAG-ATATCTCA- 335
|||||||| | |||| |||||| || ||||||| | || ||||| || ||||| |
Sbjct 222 ATCTATAGAGCGTAAAGGTCAACTTAGTTTCCTT--T--ACAAAGTC-AGTGTATCT-AG 275
Query 336 AGTTTTTCACTGTGAAGGTTT-ATTGTTATGCTTCTTAAAAGAAGACGATACA-AGGGTT 393
| ||| |||| ||| ||||| ||| |||||| || | |||||| || | ||||||
Sbjct 276 AATTTACCACTATGAGGGTTTAATT-TTATGCAAATT--GA-AAGACGTTA-ATAGGGTT 330
Query 394 GTCGTTTGGAATCCGTA-TTGCGGACAAACAAGGTGGATCCAA-CTCAGATATTCTCACC 451
| ||||||||||| || ||| || |||||||||||||| ||| ||||| ||||||||||
Sbjct 331 ATGGTTTGGAATCCCTATTTG-GGGCAAACAAGGTGGAT-CAACCTCAGGTATTCTCACC 388
Query 452 GTC-CACAC--A--AAGACAGGTTCATTTACGCTCTAGGATACAAGGATAAGGAATCTCG 506
|| | || | | |||||| || ||| ||||| |||||| |||||||||||||| |
Sbjct 389 -TCATAAACGGATTCA-ACAGGTACAGTTATGCTCTCGGATACGAGGATAAGGAATCTTG 446
Query 507 TGGTAGC-TTCCAATTATTGAGGTTTGTAGATTATTTCCTAGGA-GCACCC-AAAAATCA 563
||||| || |||| ||||||||| |||||||||| || | |||||| ||| | ||
Sbjct 447 CCGTAGCGTT-AAATTGTTGAGGTTTTTAGATTATTT-CTTCCATGCACCCGAAACA-CA 503
Query 564 ATATTTTTGGTATGAAATTTACGATTTTAACTCTGATTCATGGACAACTCTTGATGTCAC 623
|| ||||||||||||||| ||||||||| | |||| || ||||| ||| |||||||||||
Sbjct 504 ATTTTTTTGGTATGAAATCTACGATTTTGATTCTGGTTTATGGAAAACCCTTGATGTCAC 563
Query 624 TCCACACTGGTGTATATACTGTTGTGA-CCGTGGTGTTTCTCTCAACGGAAACACTTACT 682
|||| ||||| ||||||| |||| | || | | |||||||| || || ||||||||||
Sbjct 564 TCCAAACTGGGGTATATATTGTT-CAAGCCCTAGCGTTTCTCTTAAGGGTAACACTTACT 622
Query 683 GGTGTGCTA-AAGAAAGGAAAGCAGAA-GACGATATTGTCGATCACATCATATCTTTTGA 740
||||||||| | |||||| ||||| | | || || ||||| || |||| ||||||
Sbjct 623 GGTGTGCTAGTA-AAAGGAGCTCAGAAGGTTG-TA-TG--GATCATATAATATGTTTTGA 677
Query 741 TTTTACAAACGAGAGATTTGGGCCGCTTTTGCCTTTGCCGTCTAAG-GTTATGGAACATG 799
||||||||| ||||| |||||||||||| | ||| |||||||| || |||| ||| | |
Sbjct 678 TTTTACAAAAGAGAGGTTTGGGCCGCTTCTACCTCTGCCGTCT-AGCGTTAGGGATCGTA 736
Query 800 AATATGAAAT-TGT-AACTTTATCTTATGTTAAAGAAGAGAAGCTTGCAGCTTTATTTCA 857
||||| | || ||| || |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 737 AATAT-ATATATGTGAA-TTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTATTCCA 794
Query 858 GCATTAC-GAAGCAGATTGGAA-TG-AGTTTGATATATGGATTACGACTAAGATTGATGC 914
|| | ||| || | | || | | ||||| ||||||||||||||||||||||| ||
Sbjct 795 GCGCC-CTGAATCATAC-G-AACTTTATTTTGAGATATGGATTACGACTAAGATTGAGGC 851
Query 915 TGAAGTGGTGTCGTGGAGCATGTTCTTGAGAATGGATACGGGACCTA-GGATAGAGGTTC 973
||| ||||||||||||||| |||||||||||| ||||||||||||| || || | ||||
Sbjct 852 CGAAATGGTGTCGTGGAGCAAGTTCTTGAGAATCGATACGGGACCTAAGG-TAAATGTTC 910
Query 974 CACATATATGTGAAGGTTTCTTCATTGATGAGGAGAAGAAAGTCGCCATGGGTTTT-G-A 1031
|| || | | |||||| ||||| ||||||||||||||| |||||||||| | |
Sbjct 911 CAG------GT-A-G-TTTCTTGATTGACGAGGAGAAGAAAGTCTTCATGGGTTTTTGTA 961
Query 1032 -AGA--A-------GACT-T--CGA-T--CGCAAAACATTTAT---CATCATTGGAGAAG 1072
||| | |||| | ||| | | ||||| |||||| |||||||||||| |
Sbjct 962 CAGACTATAACTCCGACTATGACGACTGTCCCAAAAAATTTATTAACATCATTGGAGAGG 1021
Query 1073 CTGGATACGTAA-GAAAATTGGATATCAAAGCACATGTAGAC-AGAAA--ATGTCGGCCA 1128
|||||||| ||| |||| |||||| || || || || | || | ||| || | ||| |
Sbjct 1022 CTGGATACTTAAAGAAA-TTGGATCTCGGAGTACCTGCATACCA-AAACCAT-T-GGCTA 1077
Query 1129 -ACTGTGTGTTCTTATGTTCCAAGTTTGGTCCAAATCAAGAAACCTGCACGAGGCAAAAG 1187
| |||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1078 GA-TGTGTGCTCTTATGTTCCAAGTTTGGTCCAGATCAAGAAACTTGCACGAGGCAAAAG 1136
Query 1188 GA-AAAGACAAAGCAGCTTAGAAAAGCGTCTATTTGATCAAAACA 1231
|| ||| |||| |||| |||||||||| || ||||||||| ||||
Sbjct 1137 GATAAA-ACAACGCAGTTTAGAAAAGCATCGATTTGATCAGAACA 1180
> Ahg482868 jgi|Araly1|482868|fgenesh2_kg.4__1928__AT2G38590.1
Length=973
Score = 551 bits (298), Expect = 5e-156
Identities = 371/403 (92%), Gaps = 17/403 (4%)
Strand=Plus/Plus
Query 1 ATGACGACGATGATCTCTAATCTTCCAAGGGTTTTGATAGAGGAGAttttttttAGGGTT 60
|||||||| ||||||||||||||||| | |||||||||||||||||||||| ||||||||
Sbjct 1 ATGACGACCATGATCTCTAATCTTCCGACGGTTTTGATAGAGGAGATTTTTGTTAGGGTT 60
Query 61 CCTTTGAAATCTTTGAGAGCAGTGAGATTAACTTGCAAAAGTTGGAACACTCTATCCAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTTTGAAATCTTTGAGAGCAGTGAGATTAACTTGCAAAAGTTGGAACACTCTATCCAAA 120
Query 121 AGTAGGAGCTTTAGGAAGTTGTACATTAGTAAAAGAGCAACAAGAGAAGAGGAGTCCATG 180
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 AGTAGGAGCTTTCTGAAGTTGTACATTAGTAAAACAGCAACAAGAGAAGAGGAGTCCATG 180
Query 181 ATGATCGCTATGATGAATTTCGATCTTTATTCAATGAGGGTCGTAGTTGACGACGACGTT 240
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 181 ATGATCGCTATGATGAATTTCGATCTTTATTTGATGAGGGTCGTAGTTGACGACG---TT 237
Query 241 GATCCATCTAAAGCGTTTaaaaa-aaaa-a----G--GAAT-AAAAAA---TCTATAGCG 288
||||||||||||||||||||||| |||| | | ||| |||||| |||||||||
Sbjct 238 GATCCATCTAAAGCGTTTAAAAAGAAAAGAAAAAGAAGAAAGAAAAAAGAATCTATAGCG 297
Query 289 TTTAAACGTCAACCTAT-TTTCCTTGATGAACAAGTCAAGATATCTCAAGTTTTTCACTG 347
||||||||| ||||| | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 298 TTTAAACGTAAACCT-TGTTTCCTTGATGAACAAGTCAAGATATCTCAAGTCTTTCACTG 356
Query 348 TGAAGGTTTATTGTTATGCTTCTTAAAAGAAGACGATACAAGG 390
||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct 357 TGAGGGTTTATTGTTATGCATCTTGAAAGAAGACGATACAAGG 399
Score = 291 bits (157), Expect = 1e-77
Identities = 255/296 (86%), Gaps = 31/296 (10%)
Strand=Plus/Plus
Query 642 CTGTTGTGACCGTGGTGTTTCTCTCAACGGAAACACTTACTGGTGTGCTAAAGAAAGGAA 701
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 437 CTGTGGTGACTGTGGTGTTTCTCTCAACGGAAACACTTACTGGTGTGCTAAAAAAAGGAA 496
Query 702 AGCAGAAGACGATATTGTCGATCACATCATATCTTTTGATTTTACAA-ACGAGAGATTTG 760
||||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||||
Sbjct 497 CGCAGAAGACGATATTGTCGATAACATCATATGTTTTGATTTTACAAGA-GAGAGATTTG 555
Query 761 GGCCGCTTTTGCCTTTGCCGTCTAAGGTTATGGAACATGAATATGAAATTGTAACTTTAT 820
|||||||||||||||||||||||| | | | | | | |||| | | |
Sbjct 556 GGCCGCTTTTGCCTTTGCCGTCTA-GCCT-T--A---T-A-TATG-----G-A--T---- 594
Query 821 CTTATGTTAAAGAAGAGAAGCTT-GCAGCTTTATTTCAGCATTACGAAGCAGATTGGAAT 879
| ||| ||||| || | |||| |||||||||||||||||||||||| |||||||||||
Sbjct 595 C--ATG--AAAGA-GA-A-GCTTTGCAGCTTTATTTCAGCATTACGAATCAGATTGGAAT 647
Query 880 GAGTTTGATATATGGATTACGACTAAGATTGATGCTGAAGTGGTGTCGTGGAGCAT 935
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 648 GAGTTTGATATATGGATTACGACTAAGATTGATGCTGAAATGGTGTCGTGGAGCAT 703
Score = 206 bits (111), Expect = 4e-52
Identities = 129/137 (94%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 1152 TTTGGTCCAAATCAAGAAACCTGCACGAGGCAAAAGGAAAAGACAAAGCAGCTTAGAAAA 1211
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 840 TTTGGTCCAAATCAAGAAACCTGCACGAGGGAAAAGGAAAAGACAAAGCAGCTTTGAAAA 899
Query 1212 GCGTCTATTTGATCAAAACATGTTGAGACTTGAAGCATTTAAAAAGCTAGGCGGCTACTT 1271
|||||||||||| ||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 900 GCGTCTATTTGACCAAAACATGTTGAGACTTGAAGCATTTAAAAAGCTAGACT--T-CTT 956
Query 1272 CTAGAAGCAATATGCAG 1288
|||||||||||||||||
Sbjct 957 CTAGAAGCAATATGCAG 973
Score = 154 bits (83), Expect = 2e-36
Identities = 101/110 (92%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 970 GTTCCACATATATGTGAAGGTTTCTTCATTGATGAGGAGAAGAAAGTCGCCATGGGTTTT 1029
|||||||||||||| || |||||||||||||| |||||||||||| | ||||||||||||
Sbjct 706 GTTCCACATATATGCGACGGTTTCTTCATTGACGAGGAGAAGAAAATTGCCATGGGTTTT 765
Query 1030 GAAGAAGACTTCGATCGCAAAACATTTATCATCATTGGAGAAGCTGGATA 1079
|||||||| ||| |||||||||||||||||||||||||||| | ||||||
Sbjct 766 GAAGAAGAGTTCTATCGCAAAACATTTATCATCATTGGAGAGGATGGATA 815
> Ahg947570 jgi|Araly1|947570|scaffold_703799.1
Length=1097
Score = 353 bits (191), Expect = 1e-96
Identities = 518/665 (78%), Gaps = 65/665 (10%)
Strand=Plus/Plus
Query 573 GTATGAAATTTACGATTTTAACTCTGA-TTCATGGACAACTCTTGATGTCACTCCACACT 631
||||||||| ||||||||| ||||| | || |||||||||||||||||||||||||||||
Sbjct 464 GTATGAAATCTACGATTTTGACTCT-AGTTTATGGACAACTCTTGATGTCACTCCACACT 522
Query 632 GGTGTATATAC-TGTTGTGA-CCGTGGTGTTTCTCTCAACGGAAACACTTACTGGTGTGC 689
|||| |||| | || | | | | ||| |||||||| || ||||||||||||||| |||
Sbjct 523 GGTGGATAT-CTTGCTCT-AGCTATGGCGTTTCTCTTAAGGGAAACACTTACTGGCCTGC 580
Query 690 TAAAGAAAGGAAAGCAGAAGACGATAT-TGTCGATCACATCATATCTTTTGATTTTACAA 748
| ||||| ||| | | | | | | |||||||||| || | |||||||||||| |
Sbjct 581 --GA-AAAGG--AGCTCACG-TGGTCTCT-TCGATCACATAATCTGTTTTGATTTTAC-A 632
Query 749 ACGAGAGA-TTT-GGGCCGCTTTTGCCTTTGCCGTCTAAG-GTTATGGAACATGAATATG 805
| |||||| ||| ||||||||| | |||||||||| | | | || ||| | || ||||
Sbjct 633 A-GAGAGAGTTTCGGGCCGCTTCTACCTTTGCCGT-TTGGCGCTACGGATCGTGGATAT- 689
Query 806 AAAT-TGTAACTTTATCTTATGTTAAAGAAGAGAAGCTTGCAGCTTTATTTCAGCA-T-- 861
|| ||| |||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 690 CCATATGTGACTTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTATTTCAGCAATAC 749
Query 862 TACG-A-A--GCAGAT-TGGA-ATGAGTTTGATATATGGATTACGACTAAGATTGATGCT 915
||| | | ||| || || | ||||| |||||||||||||||||||||||||||| |||
Sbjct 750 TACTCATACTGCAAATGTGAATATGAGATTGATATATGGATTACGACTAAGATTGAAGCT 809
Query 916 GAAGTGGTGTCGTGGAGCATGTTCTTGAGAATGGATACGGGACCTAGGATAGAGGTTCCA 975
||| ||||||||||||||| ||||||||||||| ||||| ||||| ||| | | |||
Sbjct 810 GAAATGGTGTCGTGGAGCAAGTTCTTGAGAATGAATACGAAACCTAATATATA--T-CCA 866
Query 976 CATATATGTGAAGGTTTCTTCATTGATGAGGAGAAGAAAGTCGCCATGGGTTTTGA-AGA 1034
|| ||| | || || |||||| |||||||||||| | |||| || |||| |||
Sbjct 867 -AT-TAT-T-----TTCCT-CATTGACGAGGAGAAGAAAATTTTCATGAGTCTTGATAGA 917
Query 1035 AGACTTCGATCGCAAAACATTTATCATCATTGG-AGAAGCTGGATACGTAAGAAAATTGG 1093
|| || || ||| |||||| | | || | ||| | || | ||| | | ||||
Sbjct 918 -GAATT---TCCCAAGACATTTCTTAACACCGCTAGA-GA-GG---C-TAA-ATACTTGG 966
Query 1094 ATATCAAAGCACATGTAGACAGA-AA-A-TGTCGGCCAACTGTGTGTTCTTATGTTCCAA 1150
|| ||| || | | | ||| | || | ||||||||| ||||||| |||||||||||||
Sbjct 967 ATCTCAGAGTA--TCT-GACGGCCAATACTGTCGGCCACCTGTGTGCTCTTATGTTCCAA 1023
Query 1151 GTTTGGTCCAAATCAAGAAACCTGCAC-GAGGCAAAAGGAA-AAGACAAAGCAGCTTAGA 1208
||||||||||||||||||||||| ||| |||||||||||| || |||||| || |||||
Sbjct 1024 GTTTGGTCCAAATCAAGAAACCTACACTGAGGCAAAAGGATGAA-ACAAAGTAGTTTAGA 1082
Query 1209 AAAGC 1213
| |||
Sbjct 1083 AGAGC 1087
Score = 207 bits (112), Expect = 1e-52
Identities = 209/254 (82%), Gaps = 13/254 (5%)
Strand=Plus/Plus
Query 1 ATGACGACGATGATCTCTAATCTTCCAAGGGTTTTGATAGAGGAGAttttttttAGGGTT 60
|||||| ||||||| || | ||||||||| | |||||||| |||||| ||| |||||||
Sbjct 21 ATGACGTCGATGATATCCAGTCTTCCAAGAGAGTTGATAGAAGAGATTATTTCTAGGGTT 80
Query 61 CCTTTGAAATCTTTGAGAGCAGTGAGATTAACTTGCAAAAGTTGGAACACTCTATCCAAA 120
|| |||| |||| ||| | |||||||||||||||||||||||||||||| | ||||||||
Sbjct 81 CCCTTGAGATCTATGAAATCAGTGAGATTAACTTGCAAAAGTTGGAACAATTTATCCAAA 140
Query 121 AGT-AGGAGCTTTAGGAAGTTGTACATT-AGTAAAAG-AGCAACAAGAGAAGAGGAGTCC 177
||| || | ||||| |||| || ||||| | |||| | |||||||||||||||| | | |
Sbjct 141 AGTGAG-ATCTTTACGAAGATGCACATTGA-TAAA-GCAGCAACAAGAGAAGAGAA-TAC 196
Query 178 -ATGATGATCGCTATGATGAATTTCGATCTTTATTCAATGAGGGTCG-TAGTTGACGACG 235
||||||||| | |||||| | ||||||||||| |||||| ||| | || | ||||
Sbjct 197 TATGATGATCTCGATGATGCCTCACGATCTTTATTTAATGAGCGTCACT-GT-G--GACG 252
Query 236 ACGTTGATCCATCT 249
||||||||||||||
Sbjct 253 ACGTTGATCCATCT 266
> Ahg934583 jgi|Araly1|934583|scaffold_402571.1
Length=1244
Score = 294 bits (159), Expect = 9e-79
Identities = 356/444 (80%), Gaps = 42/444 (9%)
Strand=Plus/Plus
Query 838 AAGCTTGCAGCTTTATTTCAGCATTACGAAGCAGAT-TGGA-A-TGAGTTTGATATATGG 894
||| |||||||||||||||| || | | | | || | || | ||||||||| ||||||
Sbjct 769 AAGATTGCAGCTTTATTTCACCACCATG-A-TAAATAT-GATACTGAGTTTGAGATATGG 825
Query 895 ATTACGACTAAGATTGATGCT-GAAGTGGTGTCGTGGAGCATGTTCTTGAGAATGGATAC 953
||||| ||||||||||| | | ||| ||||| ||||||||| ||||||||||||||||||
Sbjct 826 ATTACAACTAAGATTGA-GGTCGAAATGGTGACGTGGAGCAAGTTCTTGAGAATGGATAC 884
Query 954 GGGACCTAGGATAGAGGTTCCACATATATGTGAAGGTTTCTTCATTGATGAGGAGAAGAA 1013
|||||||| ||||| | || | | | | | | ||||||||||||||| ||||||||
Sbjct 885 GGGACCTAAGATAG-GTTTTC-C--AGA--T--A-CTTTCTTCATTGATGAAGAGAAGAA 935
Query 1014 AGTCGCCATGGGTT-TTG-A-AGA--A-GACT-T--CGATC---GCAAAACATTTA-T-- 1058
|||| ||||| || | | | | | | |||| | ||||| || || ||||| |
Sbjct 936 AGTCTTCATGGATTGTGGTACACACTATGACTCTGACGATCATTACAGAAGATTTATTGA 995
Query 1059 CATCATTGGAGAAGCTGGATACGTAAGAAAATTGGATATC-AAAGCACATGTAGACAGAA 1117
||| |||||||| ||||||||| |||||||||||||| | || || || ||||| ||
Sbjct 996 CATAATTGGAGAGGCTGGATACCTAAGAAAATTGGAT-CCTGGAGTACCTGCAGACA-AA 1053
Query 1118 AA-TGTCGGCC-AACTGTGTGTTCTTATGTTCCAAGTTTG-GTCCAAATCAAGAAACCTG 1174
|| ||| |||| | |||||| |||||||||||||||||| | ||||||||| |||||||
Sbjct 1054 AATTGTAGGCCTGA-TGTGTGCTCTTATGTTCCAAGTTTGAG-CCAAATCAAAAAACCTG 1111
Query 1175 CACGAGGCAAAAGGAAAAG-ACAAAGCAGCTTAGAAAAGCGTCTATTTGATCAAAACATG 1233
|||||||||||||| | || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1112 CACGAGGCAAAAGG-ATAGAACAAAGCAGTTTAGAAAAGCGTCTATTTGATCAAAACATG 1170
Query 1234 TTGAGACTTGAAGCATTTAAAAAG 1257
|||||||||| ||| || |||||
Sbjct 1171 TTGAGACTTGCTGCAGTTGAAAAG 1194
Score = 213 bits (115), Expect = 3e-54
Identities = 213/257 (83%), Gaps = 20/257 (8%)
Strand=Plus/Plus
Query 1 ATGACGACGATGATCT-CTAATCTTCCAAGGGTTTTGATAGAGGAGAttttttttAGGGT 59
|||||||||||||||| | ||||||||||||| |||||||||||||||| ||| ||||||
Sbjct 22 ATGACGACGATGATCTAC-AATCTTCCAAGGGATTTGATAGAGGAGATTATTTCTAGGGT 80
Query 60 TCCTTTGAAA-TCTTTGAGAGCAGTGAGATTAACTTGCAAAAGTTGGAAC-ACTCTATCC 117
||| |||||| || ||| ||||||||||||||||||||||||||||||| | | |||||
Sbjct 81 TCCCTTGAAATTC-ATGAAAGCAGTGAGATTAACTTGCAAAAGTTGGAACGATT-TATCC 138
Query 118 AAAAGT-AGGAGCTTTAGGAAGTTGTACATTAGTAAAAGAGCAACAAGAGAAGAGGAGTC 176
|||||| || |||||| |||| || ||||| ||||| |||||||| ||| ||||||
Sbjct 139 AAAAGTGAG-AGCTTTTCGAAGATGCACATTGGTAAAT---CAACAAGAAAAGGGGAGTC 194
Query 177 CATGATGATCGCTATGATGAATT-TCGATCTTTAT-TCAATGAG-GGTCGTAGTTGACGA 233
||||||||||| |||||| | | |||||||| | |||||| || || || |||
Sbjct 195 TATGATGATCGCCATGATGCCTCATA-ATCTTTATCT-AATGAGTGGG-GTCGT---CGA 248
Query 234 CGACGTTGATCCATCTA 250
||| |||||||||||||
Sbjct 249 CGATGTTGATCCATCTA 265
> Ahg905807 jgi|Araly1|905807|Al_scaffold_0003_2935
Length=903
Score = 246 bits (133), Expect = 3e-64
Identities = 512/683 (75%), Gaps = 73/683 (11%)
Strand=Plus/Plus
Query 382 GATACAAGGGTTGTCGTTTGGAATCCGTATTGCGGACAAACAAGGTGGATCCAA-CTCAG 440
||||| ||| |||| ||||||||||||||||| || ||||||||||||||| || || ||
Sbjct 256 GATACTAGGCTTGTGGTTTGGAATCCGTATTGGGGGCAAACAAGGTGGATCGAACCT-AG 314
Query 441 ATATTCTCACCGTCC--A-CACA-AAGACAGGTTCATTTACGCTCTAGGATACAAGGATA 496
||||||||||| || | | | || ||||||| ||||||||| |||||| |||||
Sbjct 315 ATATTCTCACC-ACCTAATCGGATGTGAAAGGTTCACTTACGCTCTTGGATACGTGGATA 373
Query 497 AGGAA-TCTCGTGGTAGCTTCCAATTATTGAGGTTTGTAGATTATT--TCCTAGGAGCAC 553
| || ||| || ||||| | |||||||||||||| ||||| ||| | ||| | | |
Sbjct 374 A-TAAGTCTTGTCGTAGCCACAAATTATTGAGGTTTATAGATGATTACTTCTATG-G-A- 429
Query 554 CCAAAAATCAATATT-TTTGGTATGAAATTTACGATTTTAACTCTGATTCATGGACAACT 612
|| | | | || ||||||||||| |||||||| | |||| || |||| | |||
Sbjct 430 CC-----TGAGT-TTGAATGGTATGAAATCTACGATTTCGAGTCTGGTTTATGGGCGACT 483
Query 613 CTTGATGTCACTCCACACTGGTGTATATACTG-TTG-T-GACCGTGGTGTTTCTCTCAAC 669
|||||||||||||||||||||||||||| | | ||| | | || ||| ||||||| ||
Sbjct 484 CTTGATGTCACTCCACACTGGTGTATAT-C-GCTTGGTAG-CCATGGAATTTCTCTTAAG 540
Query 670 GGAAACACTTACTGGTGTGCTA--AA--GAAAGGAAAGC-A-GAA--GACGATAT-TG-T 719
||||||||||| ||| |||||| || |||| | | || | | | ||| |||| || |
Sbjct 541 GGAAACACTTATTGGAGTGCTATTAAAAGAAACGCACGCCACGGATTGACCATATCTGAT 600
Query 720 C--GATCACATCATATCTTTTGATTTTACAA-ACGAGAGATTTGGGCCGCTTTTGCCTTT 776
| || ||||| || | |||||||||||||| | ||||||||||| |||||| ||||| |
Sbjct 601 CATGACCACATAATCTGTTTTGATTTTACAAGA-GAGAGATTTGGACCGCTTCTGCCTCT 659
Query 777 GCCGTCTAAG-GTT-ATGGAACATGAATATGAAATTGTAACTTTATCTTATGTTAAAGAA 834
|||| |||| ||| | | | ||| |||| | | | |||| | || ||||| ||||
Sbjct 660 ACCGT-TAAGCGTTGA-GTATTATGGTTATG---T-G-A-CTTTGTTTTGTGTTAGAGAA 711
Query 835 GAGAAGCTTGCAGCTTTATTTCAGCATTACGAAGCAGATTGGAATG-A-----GTTTGAT 888
||||||||||| |||||| || || || || | | ||||||| | |||| ||
Sbjct 712 GAGAAGCTTGCGGCTTTA---CAACAAAAC-AACC-G-TTGGAATCCATATAAGTTTAAT 765
Query 889 ATATGGATTACGACTAAGATTGATGC-TGAAGTGGTGTCGTGGAGCATGTTCTTGAGAAT 947
||||||||||| ||||| ||||| || |||| |||||||||||||| ||||||| | |
Sbjct 766 ATATGGATTACAACTAATATTGA-GCATGAACAGGTGTCGTGGAGCAAATTCTTGACAGT 824
Query 948 GGATACGGGACCTAGGATAGAGGTTCCACATATATGTGAAGGTTTCTTCATTGATGAGGA 1007
|||| |||| || | | | || ||| | ||| || | ||| ||||||||||||||
Sbjct 825 AGATATGGGAACT-GAA-ACTCCATCTACA-A-ATGAGA-GTTTT-TTCATTGATGAGGA 878
Query 1008 GAAGAAAGTCGCCATGGGTTTTG 1030
|| ||| | |||||| |||||
Sbjct 879 AAA-AAATT-GCCATGCTTTTTG 899
> Ahg340580 jgi|Araly1|340580|fgenesh1_pg.C_scaffold_3000343
Length=870
Score = 246 bits (133), Expect = 3e-64
Identities = 376/487 (77%), Gaps = 42/487 (9%)
Strand=Plus/Plus
Query 562 CAATATTTT-TGGTATGAAATTTACGATTTTAACTCTGATTCATGGACAACTCTTGATGT 620
||| ||||| || |||||||| ||||||||| |||||| || ||||| |||||||||||
Sbjct 292 CAA-ATTTTATGTTATGAAATCTACGATTTTGACTCTGTTTTGTGGACGACTCTTGATGT 350
Query 621 CACTCCACACTGGTGTATA-TACTG-TT-GTGACCGT-G-GTGTTTCTCTCAACGGAAAC 675
||||||||| ||| | ||| ||| | || || ||||| | || |||| || | ||||||
Sbjct 351 CACTCCACATTGGCGGATAGTACCGTTTGGTAACCGTAGCGT-TTTC-CTTGAGGGAAAC 408
Query 676 ACTTACTGGTGTGCTAAAGAAAGGAAAGCAGAA---GAC-G--A-TATTG--TC---GAT 723
||||||| |||||| ||||||||| ||||| ||| | | || | | |||
Sbjct 409 ACTTACTATTGTGCTTCAGAAAGGAACTCAGAAGTGGACGGACACCATGGACACAAAGAT 468
Query 724 CACATCATATCTTTTGATTTTACAAACGAGAGATTTGGGCCGCTTTTGCCTTTGCCGTCT 783
||||| || | |||||||| |||||| ||||||||||| |||||| | ||| |||||| |
Sbjct 469 CACATAATCTGTTTTGATTATACAAAAGAGAGATTTGGACCGCTTCTACCTCTGCCGT-T 527
Query 784 AAGGTTATGGAACATGAATATGAAAT-TGTAACTTTATCTTATGTTAAAGAAGAGAAGCT 842
| | || ||| ||| | | ||| |||||||||| ||||| ||||||||||||
Sbjct 528 TA-GCGCCGG-GTATG---ATG-ACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCT 581
Query 843 TGCAGCTTTA-TTTCAGCATTACGAAGCAGATTGGA-ATGAGTTTGATATATGGATTACG 900
||| |||||| || | |||| |||||| | | | | |||||||||| |||||||| |||
Sbjct 582 TGCGGCTTTACTTAC-GCATAACGAAGTA-AATCTATATGAGTTTGACATATGGATCACG 639
Query 901 ACTAAGATTGATGCTGAAGTGGTGTCGTGGAGCATGTTCTTGAGAATGGATACGGGACCT 960
|||||||||||||| ||| | | ||||||| || |||||||| | ||||| || |||
Sbjct 640 ACTAAGATTGATGCCGAAAAGATATCGTGGAACAAGTTCTTGACAGTGGATTCGCAACC- 698
Query 961 AGGATAGAGGTTCC-ACATATATGTGAAGGTTTCTTCATTGATGAGGAGAAGAAAGTCGC 1019
| | | | |||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 699 A-G--ACA--TTCCGA-ATATATGTG-GGGTTTCTTCATTGATGAGGAGAAGAAAGTCAT 751
Query 1020 CATGGGT 1026
|||||||
Sbjct 752 CATGGGT 758
> Ahg345622 jgi|Araly1|345622|fgenesh1_pg.C_scaffold_4001964
Length=1383
Score = 137 bits (74), Expect = 2e-31
Identities = 198/253 (78%), Gaps = 27/253 (11%)
Strand=Plus/Plus
Query 1 ATGACGACGATGATCTCTAATCTTCCAAGGGTTTTGATAGAGGAGAttttttttAGG-GT 59
|||||||| |||||||| |||||||||| || |||||| ||||| ||| ||| ||| |
Sbjct 1 ATGACGACAATGATCTCCAATCTTCCAAAGGATTTGATCGAGGAAATTCTTTCGAGGCTT 60
Query 60 TCCTTTGAAATCTTTGAGAGCAGTGAGATTAACTTGCAAAAGTTGGAACACTCTATCCAA 119
||| | ||||||| ||| |||||||||||||||||||||||||||||||| | |||||||
Sbjct 61 TCC-TGGAAATCTATGAAAGCAGTGAGATTAACTTGCAAAAGTTGGAACAATTTATCCAA 119
Query 120 AAGTAGGAGCTTTAGGAAGTTGTACATTAGTAAAAGAGCAACAAGAGAAG-AGGAGTCCA 178
|||| | || | | ||||||| ||||| |||||||||||| | |||| |
Sbjct 120 AAGT-G-AG----A-----T-GTACATTGGTAAAT---CAACAAGAGAAGGAC-AGTCTA 163
Query 179 TGATGATCGCTATGATGAATTTCGATCTTTAT-TCAATGAGGGTCGTAGTTGACGACGAC 237
|||||||||| |||||| | | |||||||| | |||||| | | || || ||||
Sbjct 164 TGATGATCGCGATGATGCCTCACAATCTTTATCT-AATGAGC-T-GC-GT---CGTCGAC 216
Query 238 GTTGATCCATCTA 250
|||||||||||||
Sbjct 217 GTTGATCCATCTA 229
> Ahg925199 jgi|Araly1|925199|scaffold_200760.1
Length=1195
Score = 75.0 bits (40), Expect = 1e-12
Identities = 56/64 (88%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 577 GAAATTTACGATTTTAACTCTGATTCATGGACAACTCTTGATGTCACTCCACACTGGTGT 636
||||| ||||| || |||||| ||||||||| |||||||||||||||||||||||||
Sbjct 570 GAAATCTACGAATTAAACTCTAATTCATGGAGGGTTCTTGATGTCACTCCACACTGGTGT 629
Query 637 ATAT 640
||||
Sbjct 630 ATAT 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48149244171
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5