BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38600.1
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321557 jgi|Araly1|321557|fgenesh1_pm.C_scaffold_4001614 1230 0.0
> Ahg321557 jgi|Araly1|321557|fgenesh1_pm.C_scaffold_4001614
Length=756
Score = 1230 bits (666), Expect = 0.0
Identities = 727/757 (96%), Gaps = 2/757 (0%)
Strand=Plus/Plus
Query 1 ATGGAAAAGTGTAGTAGAGAGACGTTGCTTTTCATTTTTATAACAATATCATCAGTGGCA 60
|||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1 ATGGAAAAGTGTAGGAGAGAGACGTTGCTTCTCATTTTCCTAACAATATCATCAGTGGCA 60
Query 61 ACCAGTACAAGTACATGGATGCCGATGGATGGAAATTATGGTGCTAGCTATTGCTTAAGC 120
| | | |||||| |||||||||||||||| |||||||||||| |||| ||||||||||||
Sbjct 61 AGCGGCACAAGTCCATGGATGCCGATGGACGGAAATTATGGTACTAGTTATTGCTTAAGC 120
Query 121 TGGAGACTAGCAGTAGAGACCAACAATGTACGTGCGTGGCGCATTGTTCCTCTGCAGTGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGAGACTAGCAGTAGAGACCAACAATGTACGTGCGTGGCGCATTGTTCCTCTGCAGTGT 180
Query 181 CTGCGTTACGTTGAGGTATATATGCTTGCTGGTCAGTATGACAGAGACGTCCAGTTGACT 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTGCATTACGTTGAGGTATATATGCTTGCTGGTCAGTATGACAGAGACGTCCAGTTGACT 240
Query 241 GTGGACCAAATCAAAG-TTTATCTCAATGAGATTATCCTTCCTGGTGATGGCATGGACGC 299
||||||||||| || | |||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 241 GTGGACCAAAT-AAGGGTTTATCTCAATGAGATAACCCTCCCTGGTGATGGCATGGACGC 299
Query 300 ATGGATCTTGGATGTTGATGATACTTGCTTCTCAAACGTCTTTTACTATCGGCTTAAGAG 359
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 300 ATGGATCTTGGATGTTGATGATACTTGCTTCTCAAATGTCTTTTACTATCGCCTTAAGAG 359
Query 360 ATATGGATGTGACCCTTATGATCCAACTGGATTTAGAACATGGGCGATGAAAGGAGAGTC 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 ATATGGATGTGACCCTTATGATCCAACCGGATTTAGAACATGGGCGATGAAAGGAGAGTC 419
Query 420 TCCAGCAATACAACCTGTTCTTGAATTGTTCTATAAACTGATAGAAACAGGCTTCAAAGT 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 420 TCCAGCAATACAACCTGTTCTTGAATTGTTCAATAAACTGATAGAAACAGGCTTCAAAGT 479
Query 480 TTTCCTAGTAACCGGAAGAGACGAAGAGACCCTTCGCCAGGCAACACTAGAGAATTTGCA 539
||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 480 TTTCCTAATAACCGGAAGAGACGAAGAGACCCTTCGTCAGGCAACAGTAGAGAATTTGCA 539
Query 540 TAACCAAGGATTCACTGGTTATGAAAGGCTGATTATGAGGACAGCGGATAACAAAAGACA 599
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 540 TAACCAAGGATTCACTGGTTATGAAAGGTTGATTATGAGGACAGCAGATAACAAAAGACA 599
Query 600 AAGCGCAACAACATACAAAACAAGAATCAGAAAGGAGATGATGGAAGAAGGTTACAGGAT 659
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 600 AAGCGCAACAACATACAAAACAAGAGTCAGAAAGGAAATGATGGAAGAAGGTTACAGGAT 659
Query 660 ATGGGGAAATGTAGGCGACCAATGGAGTGACTTACAAGGAGAATATTCAGGGGATCGTAC 719
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 660 ATGGGGAAATGTAGGCGACCAATGGAGTGACTTACAAGGAGAATATACAGGGGATCGTAC 719
Query 720 CTTCAAGATTCCTAATCCTATGTACTTCGTTCCCTAA 756
|||||||||||||||||||||||||||||||||||||
Sbjct 720 CTTCAAGATTCCTAATCCTATGTACTTCGTTCCCTAA 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27867852327
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5