BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38610.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482870 jgi|Araly1|482870|fgenesh2_kg.4__1930__AT2G38610.2 2102 0.0
> Ahg482870 jgi|Araly1|482870|fgenesh2_kg.4__1930__AT2G38610.2
Length=1402
Score = 2102 bits (1138), Expect = 0.0
Identities = 1242/1291 (96%), Gaps = 11/1291 (1%)
Strand=Plus/Plus
Query 149 ACCCATGTCTGGTTTATACAATAACTCATCTTACTTCTCTCCTGCTCGAGCTGCTTCTCC 208
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 119 ACCCATGTCTGGTTTATACAACAACTCCTCTTACTTCTCTCCTGCTCGAGCTGCTTCTCC 178
Query 209 TCAGATTAGAAGCACTCCTGAGATCGACAGCTCTCAGTACTTGACGGAGCTTCTCGCTGA 268
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 179 TCAGATTAGAAGCACTCCTGAGATCGACAGTTCTCAGTACTTGACGGAGCTTCTCGCTGA 238
Query 269 ACATCAAAAGCTTACTCCTTTTATGCAGGTCCTACCCATATGTAGCCGTCTATTGAATCA 328
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 239 ACATCAAAAGCTTACTCCTTTTATGCAGGTCCTACCTATATGTAGCCGTCTATTGAATCA 298
Query 329 AGAGATGTTCAGGGTCTCTGGAATGATGTCTAACCAAGGATTTGGTGATTTTGATAGACT 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AGAGATGTTCAGGGTCTCTGGAATGATGTCTAACCAAGGATTTGGTGATTTTGATAGACT 358
Query 389 TCGACACAGAAGTCCCAGCCCTATGGCTTCTTCTAATCTTATGTCTAATGTCTCTAATAC 448
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 359 TCGACATAGAAGTCCCAGCCCTATGGCTTCTTCTAATCTTATGTCTAATGTTTCTAATAC 418
Query 449 CGGGTTAGGAGGCTGGAACGGCCTCTCTCAGGAGAGACTTAGTGGAACACCTGGAATGAC 508
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CGGGTTAGGTGGCTGGAACGGCCTCTCTCAGGAGAGACTTAGTGGAACACCTGGAATGAC 478
Query 509 AATGGATTGGCAAGGTGCACCTGGAAGCCCCAGTTCATACACCGTCAAAAGGATATTGCG 568
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 479 AATGGATTGGCAAGGTGCTCCTGGAAGCCCCAGTTCATACACTGTCAAAAGGATATTGCG 538
Query 569 TCTGGAGATTCCTGTAGATAACTATCCTAATTTCAATTTTGTTGGACGACTTCTCGGCCC 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCTGGAGATTCCTGTAGATAACTATCCTAATTTCAATTTTGTTGGACGACTTCTCGGCCC 598
Query 629 TAGAGGCAACTCGTTAAAACGCGTTGAAGCTACCACCGGTTGCCGAGTATTCATCAGAGG 688
|||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 599 TAGAGGCAACTCATTAAAACGTGTTGAAGCTACCACGGGTTGCCGTGTATTCATCAGAGG 658
Query 689 GAAAGGGTCAATCAAGGATCCCGAAAAGGAAGATAAATTAAGGGGAAGACCTGGCTATGA 748
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 659 GAAAGGGTCAATCAAGGATCCCGAAAAGGAAGATAAACTAAGGGGAAGACCGGGCTATGA 718
Query 749 ACACTTGAATGAGCAGCTTCACATCTTAATAGAGGCAGATCTTCCAGCTAGTATTGTGGA 808
|||| |||||||||| || ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 719 ACACCTGAATGAGCAACTCCACATCTTAATAGAGGCAGATCTTCCAGCAAGTATCGTGGA 778
Query 809 GATACGTCTGCGACAAGCTCAAGAAATTATAGAAGAGTTACTAAAGCCTGTGGACGAGTC 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 779 GATACGTCTGCGACAAGCTCAAGAAATTATAGAAGAGTTACTAAAGCCTGTGGACGAATC 838
Query 869 GCAAGATTTCATAAAGAGACAGCAGCTGAGGGAACTGGCATTGCTAAACTCGAACAACCT 928
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 839 GCAAGATTTCATAAAGAGACAGCAGCTGAGGGAACTAGCATTGCTAAACTCGAACAACCT 898
Query 929 GAGGGAAGAGAGTCCGGGGCCAAGCGGAGGTGGAAGCGTTTCGCCTTTCAATTCAAGTGG 988
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 899 GAGGGAAGAGAGTCCCGGGCCAAGTGGCGGTGGAAGCGTTTCGCCTTTCAATTCAAGTGG 958
Query 989 TAAACGCCCGAAAACAGGATGCTAAGTAGCGTTTTGTACGTCTCGCCCAAAACGCTCCTT 1048
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 959 TAAACGCCCGAAAACAGGATGCTAAGCAGCGTTTTGTTTGTCTCGCCCAAAACGCTCCTT 1018
Query 1049 CAAGCCTTATAATGGTTACTTCAACCAAAAGTACATGTCTGCATGCATTACACAGACGCA 1108
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TAAGCCTTATAATGGTTTCTTCAACCAAAAGTACATGTCTGCATGCATTACACAGACGCA 1078
Query 1109 CATGTGTATATCTGGTTTCTCCAGTAGTGGCTGCAATGGTGGTGGTCTGGTCAAGGCCTG 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CATGTGTATATCTGGTTTCTCCAGTAGTGGCTGCAATGGTGGTGGTCTGGTCAAGGCCTG 1138
Query 1169 CCCTGGTCTCTCTCGGGTGAGCGACCCTGTGGctttcgtttttcttcttctttattttaa 1228
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1139 CCCTGGTCTCTCTCGGGTGAGCGACCCTGTGGCTTTCGTTTTTCTTCTTCTTTATTTTCA 1198
Query 1229 acttttgtttttctttttcCTCATCAAAAATTCATTACAGATTATTTAAAAAAGATTCAT 1288
|||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1199 T-TTTTGTTTTT-TTT--CCTCATCAAAAATTCATTACAGATTATT-AAAAAATATTCAT 1253
Query 1289 GCaaaaaaaaaaaaaaaG-AGTATGAGatatataata-tatataGGGAGAAAAAGATGTG 1346
||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct 1254 GCAAAAAAAAAAAAAAATTAGTATGAGATATATA-TAATATATAGGGAGAAAAAGATGTT 1312
Query 1347 G-TGGCTTGGGAGGGCGTGGACTGAAAATTCTTATTGTATAAACATAAAC-AAAAAACAC 1404
| || |||||||||||||||||||||| ||||||||||| |||||||||| |||||||||
Sbjct 1313 GATGCCTTGGGAGGGCGTGGACTGAAA-TTCTTATTGTAAAAACATAAACGAAAAAACAC 1371
Query 1405 ATTTATTGGATTGATTCTTATCGTTTGATTT 1435
||||||||||||||||||||| |||||||||
Sbjct 1372 ATTTATTGGATTGATTCTTATTGTTTGATTT 1402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5