BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38620.2
Length=1175
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485815 jgi|Araly1|485815|fgenesh2_kg.5__1807__AT3G54180.1 983 0.0
Ahg934610 jgi|Araly1|934610|scaffold_402598.1 381 6e-105
> Ahg485815 jgi|Araly1|485815|fgenesh2_kg.5__1807__AT3G54180.1
Length=1020
Score = 983 bits (532), Expect = 0.0
Identities = 817/951 (86%), Gaps = 34/951 (4%)
Strand=Plus/Plus
Query 19 AATGGAGAAATACGAGAAGCTCGAAAAGGTCGGTGAAGGAACCTATGGAAAAGTCTACAA 78
||||||||||||||||||||| || |||||||| |||||||| || || |||||||||||
Sbjct 88 AATGGAGAAATACGAGAAGCTAGAGAAGGTCGGCGAAGGAACATACGGGAAAGTCTACAA 147
Query 79 AGCAATGGAGAAAACCACCGGAAAACTCGTCGCTCTGAAGAAAACTAGGCTCGAAATGGA 138
||| ||||||||| || || || || || ||||||||||||||| | ||||| |||||
Sbjct 148 AGCGATGGAGAAAGGAACTGGTAAGCTTGTAGCTCTGAAGAAAACTCGTCTCGAGATGGA 207
Query 139 CGAAGAAGGTATACCACCAACGGCTCTCCGTGAGATCTCTCTTCTCCAAATGCTTTCTC- 197
|||||||||||| |||||||| ||||| ||||||||||| |||||||||||| || ||
Sbjct 208 CGAAGAAGGTATTCCACCAACTGCTCTTCGTGAGATCTCGCTTCTCCAAATG--TTATCA 265
Query 198 A-ATCAATCTACATCGTTCG-TCTCCTCTGCGTCGAACATGTTATTCAATCGAAAGATTC 255
| ||| ||||| | ||||| | | |||||||||||||||| ||| ||| || | ||
Sbjct 266 ACATCGATCTATGTTGTTCGAT-TACTCTGCGTCGAACATG---TTC-ATC-AACCA-TC 318
Query 256 GACTGTTTCTCACTCTCCCAAATCCAATCTCTATCTCGTTTTTGAGTATCTCGACACTGA 315
|| ||||| ||| ||||||| ||||||||||||||||| |||||||| || |||||
Sbjct 319 TACCAAATCTCAATCTACCAAATCGAATCTCTATCTCGTTTTCGAGTATCTTGATACTGA 378
Query 316 TCTCAAGAAATTTATAGATTC-TCAT-AGAAAGGGCTCGAATCCT-AGACCGCTTGAGGC 372
|||||||||||| || ||||| | || |||||| | | |||||| || || |||||| |
Sbjct 379 TCTCAAGAAATTCATCGATTCGT-ATCGGAAAGGAC-CTAATCCTAAG-CCTCTTGAGCC 435
Query 373 TTCTCTTG-TGCAGAGGTTTATGTTTCAGCTTTTTAAAGGTGTGGCTCATTGTCATAGCC 431
|| | ||| | |||| ||| ||||||||||||| |||||| || || ||||||||||| |
Sbjct 436 TT-TTTTGATTCAGAAGTTGATGTTTCAGCTTTGTAAAGGCGTTGCGCATTGTCATAGTC 494
Query 432 ATGGTGTGCTTCACCGTGATCTTAAACCGCAGAATCTTC-TATTG-GATAAGGATAAAGG 489
| ||||||||||||||||||||||||||||||||||||| | ||| || || |||||||
Sbjct 495 ACGGTGTGCTTCACCGTGATCTTAAACCGCAGAATCTTCTTCTTGTGA-AA-GATAAAGA 552
Query 490 GATTCTTAAGATTGCTGATTTGGGTCTTAGTCGTGCTTTTACTGTGCCTCTTAAGGCTTA 549
| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||
Sbjct 553 GCTTCTTAAGATTGCTGATTTGGGTCTTGGTCGTGCTTTTACTGTTCCTCTTAAGTCTTA 612
Query 550 TACACATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTT-TTGCTTGGTTCTACTC 608
||| ||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 613 TACGCATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTCTT-CTTGGATCTACTC 671
Query 609 ATTACTCTACTGCTGTTGATATTTGGTCTGTTGGATGCATCTTTGCCGAGATGATTAGGA 668
|||| || |||| ||||||||| ||||||||||| ||||||||||| |||||| || |||
Sbjct 672 ATTATTCAACTGGTGTTGATATGTGGTCTGTTGGTTGCATCTTTGCTGAGATGGTTCGGA 731
Query 669 GGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGCAACTACTTCATATTTTCAGATTGT 728
|||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 732 GGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGCAATTGCTTCATATCTTCAGATTGC 791
Query 729 TAGGAACACCAACTGAGCAGCAATGGCCGGGTGTAATGGCA-T-TGCGTGACTGGCATGT 786
|||||||||||||||||||||||||||||||||| | || | ||||||||||||||||
Sbjct 792 TAGGAACACCAACTGAGCAGCAATGGCCGGGTGTG-TC-CACTCTGCGTGACTGGCATGT 849
Query 787 CTATCCAAAGTGGGAGCCGCAAGACTTATCACGTGCTGTTCCATCTCTATCTCCTGAAGG 846
|| || ||||||||||||||||||||| | | ||||||||| ||||| || ||||||||
Sbjct 850 TTACCCGAAGTGGGAGCCGCAAGACTTAACTCTTGCTGTTCCTTCTCTTTCACCTGAAGG 909
Query 847 AATTGATCTTCTCACGCAAA-TGTTGAAGTACAATCCAGCAGAAAGAATTTCAGCAAAAG 905
| |||||||||||| | ||| || | |||||||||||||| || |||||||||||||||
Sbjct 910 AGTTGATCTTCTCATG-AAACTGCTCAAGTACAATCCAGCCGAGAGAATTTCAGCAAAAA 968
Query 906 CAGCTCTCGATCATCCCT-ACTTTGACAGCCTTGACAAATCTCAGTTCTGA 955
|||| || ||||| |||| | ||||||||||||||||| ||||||||||||
Sbjct 969 CAGCACTTGATCA-CCCTTATTTTGACAGCCTTGACAAGTCTCAGTTCTGA 1018
> Ahg934610 jgi|Araly1|934610|scaffold_402598.1
Length=630
Score = 381 bits (206), Expect = 6e-105
Identities = 223/231 (97%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 724 ATTGTTAGGAACACCAACTGAGCAGCAATGGCCGGGTGTAATGGCATTGCGTGACTGGCA 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 40 ATTGTTAGGAACACCAACTGAGCAGCAATGGCCGGGTGTAATGGCATTGCGTGACTGGCA 99
Query 784 TGTCTATCCAAAGTGGGAGCCGCAAGACTTATCACGTGCTGTTCCATCTCTATCTCCTGA 843
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 100 TGTCTATCCAAAGTGGGAGCCGCAAGACTTTTCACGTGCTGTTCCATCTCTATCTCCTGA 159
Query 844 AGGAATTGATCTTCTCACGCAAATGTTGAAG-TACAATCCAGCAGAAAGAATTTCAGCAA 902
||||| |||||||||||||||||| | ||| ||||||||| ||||||||||||| ||||
Sbjct 160 AGGAAGAGATCTTCTCACGCAAATGCT-AAGGTACAATCCAACAGAAAGAATTTCGGCAA 218
Query 903 AAGCAGCTCTCGATCATCCCTACTTTGACAGCCTTGACAAATCTCAGTTCT 953
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 AAGCAGCTCTCGATCATCCCTACTTTGACAGCCTTGACAAATCTCAGTTCT 269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43841354550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5