BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38630.1
Length=1897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934611 jgi|Araly1|934611|scaffold_402599.1 2468 0.0
Ahg938338 jgi|Araly1|938338|scaffold_502529.1 1495 0.0
> Ahg934611 jgi|Araly1|934611|scaffold_402599.1
Length=1444
Score = 2468 bits (1336), Expect = 0.0
Identities = 1400/1432 (98%), Gaps = 0/1432 (0%)
Strand=Plus/Plus
Query 270 AAGCTTGAATGATGGAAGGAAGAAGAATCATAGCAAACCCTAGACCGTGTAGCGGTAGTA 329
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 13 AAGCTTGAATGATGGAAGGAAGAAGAATCATAGCAAACCCTAGACCTTGTAGCGGTAGTA 72
Query 330 GAAGAGTTATTGCTAAGAAGAGGTCTCGTCCCGATGGATTCGTCAATAGCGTTAAAAAGC 389
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 73 AAAGAGTTGTTGCTAAGAAGAGGTCTCGTCCCGACGGATTCGTCAATAGCGTTAAAAAGC 132
Query 390 TTCAACGCCGAGAAATCTCTTCTCGTATGGATCGAGCTTTCTCAATCAGCACTGCTCAAG 449
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 133 TTCAACGCCGAGAAATCTCTTCTCGTATGGATCGAGCTTTCTCAATCAGCACCGCTCAAG 192
Query 450 AGAGATTCCGCAATATGCGTCTCGTGGAGCAATATGATACGCATGATCCTAAAGGATACT 509
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 193 AGAGATTCCGCAATATGCGTCTCGTGGAGCAATATGACACGCATGATCCTAAAGGATACT 252
Query 510 GTTTAGTATCATTACCTAACTTGTTGAAACGAAGCAAAGTTATTGAGATTGTTGCTGCTC 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GTTTAGTATCATTACCTAACTTGTTGAAACGAAGCAAAGTTATTGAGATTGTTGCTGCTC 312
Query 570 GTGACATTGTCTTTGCTCTTACTCTATCTGGTGTCTGTGCATCTTTTAGCAGAGAGACGA 629
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 313 GAGACATTGTCTTTGCTCTTACTCTATCTGGTGTTTGTGCATCTTTTAGCAGAGAGACGA 372
Query 630 ATAAAAAGGTTTGCTTTTTAAATGTTAGTCCTGATGAAGTCATTCGGAGTTTGTTCTACA 689
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 ATAAAAGGGTTTGCTTTTTAAATGTTAGTCCTGATGAAGTCATTCGGAGTTTGTTCTACA 432
Query 690 ACAAGAACAATGATTCTCTCATTACTGTTTCTGTTTACGCCTCTGACAATTACAGCTCTT 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 ACAAGAACAATGATTCTCTCATTACTGTTTCTGTTTACGCCTCTGACAATTACAGCTCTT 492
Query 750 TGAAATGCAGATCCACTAGAATCGAATATATTCTGAGGGGTCAAGCAGACGCAGGATTTC 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 TGAAATGCAGATCCACTAGAATCGAATATATTCTGAGGGGTCAAGCAGACGCAGGATTTC 552
Query 810 CTCTTTTTGAGTCTGAGTCACTAAAGTGGCCAGGTTTTGTTGAGTTTGATGATGTTAATG 869
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 553 CTCTTTTTGAGTCTGAGTCACTAAAGTGGCCAGGTTTTGTAGAGTTTGATGATGTTAATG 612
Query 870 GGAAGGTGCTGACATATTCTGCACAGGATAGTGTTTACAAGGTGTTTGATCTGAAAAACT 929
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 613 GGAAGGTGCTGACATATTCTGCACAGGATAGTGTTTACAAGGTGTTTGATCTCAAAAACT 672
Query 930 ATGCCTTGCTATATTCGATATCAGACAAAAATGTACAAGAAATTAAGATCAGTCCAGGGA 989
|||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 673 ATGCCTTGTTATACTCGATATCAGACAAAAATGTACAGGAAATTAAGATCAGTCCAGGGA 732
Query 990 TAATGCTGTTGATTTTCAAGAGAGCTGCGAGTCATGTTCCTTTGAAGATTCTATCAATCG 1049
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TAATGTTGTTGATTTTCAAGAGAGCTGCGAGTCATGTTCCTTTGAAGATTCTATCAATCG 792
Query 1050 AAGATGGCACTCTTCTGAAGTCCTTCCATCATTTGCTTCACCGAAATAAGAAAGTTGATT 1109
|||||||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 793 AAGATGGCACGGTTCTCAAGTCCTTCAATCATTTGCTTCACCGAAACAAGAAAGTTGATT 852
Query 1110 TCATTGAACAATTCAATGAAAAGCTTCTAGTTAAGCAAGAGAACGAGAATCTACAAATAC 1169
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 853 TCATTGAACAATTCAATGAAAAGCTTCTAGTTAAGCAAGAGAACGAGAATCTCCAAATAC 912
Query 1170 TTGACGTTCGAAATGCTGAGCTGATAGAAGTTAGCAGAACTGACTTCATGACACCATCAG 1229
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 913 TTGACGTTCGAAATGCTGAGCTGATAGAAGTTAGCAGAACTGAATTCATGACACCATCAG 972
Query 1230 CATTCATATTTTTGTATGAGAATCAGTTGTTTCTAACATTCAGGAACCGAAATGTTTCTG 1289
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 973 CATTCATATTTTTGTATGAGAACCAGTTGTTTCTAACATTCAGGAACCGAAATGTTTCTG 1032
Query 1290 TGTGGAATTTCCGCGGAGAGCTTGTGACCTCGTTTGAGGATCATCTTCTTTGGCATCCAG 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 TGTGGAATTTCCGCGGAGAGCTTGTGACCTCGTTTGAGGATCATCTTCTTTGGCATCCAG 1092
Query 1350 ACTGTAACACAAACAATATCTACATAACAAGCGATCAAGATCTGATCATCTCATATTGCA 1409
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1093 ACTGTAACACAAACAATATCTACATAACAAGCGATCAGGATCTGATCATCTCATATTGCA 1152
Query 1410 AGGCAGATACTGAAGATCAGTGGATAGAAGGAAATGCGGGGTCGATTAACATAAGCAATA 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 AGGCAGATACTGAAGATCAGTGGATAGAAGGAAATGCGGGGTCGATTAACATAAGCAATA 1212
Query 1470 TCTTGACTGGTAAATGCTTAGCTAAGATAAAAGCAAATAATGGTCCTCCTAAGGAAGAGG 1529
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 1213 TCTTGACTGGTAAATGCTTAGCTAAGATAAAAGCAAAAAATGGCCCTCCTAAGGAAGAAG 1272
Query 1530 ACTGCAGCAGTAGTGATTTGGGGAATTCCTCTCGAAGGAGAAGTGCGGTTGCTGAGGCTT 1589
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1273 ACTGCAGCAGTAGTGATTTGGGGAACTCCAATCGAAGGAGAAGTGCGGTTGCTGAGGCTT 1332
Query 1590 TGGAAGACATAACCGCTCTCTTCTACGACGAAGAACGGAATGAAATATACACAGGAAACA 1649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TGGAAGACATAACCGCTCTCTTCTACGACGAAGAACGGAATGAAATATACACAGGAAACA 1392
Query 1650 GACACGGCCTCCTCCATGTCTGGTCTAATTGAAGCTACTCATCATTTGTTTT 1701
|||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 GACACGGCTTTCTCCATGTCTGGTCTAATTGAAGCTACTCATCATTTGTTTT 1444
> Ahg938338 jgi|Araly1|938338|scaffold_502529.1
Length=1451
Score = 1495 bits (809), Expect = 0.0
Identities = 1222/1420 (86%), Gaps = 33/1420 (2%)
Strand=Plus/Plus
Query 280 GATGGAAGGAAGAAGAATCATAGCAAACCCTAGACCGTGTAGCGGTAGTAGAAGAGTTAT 339
||||||||||||||| || | |||| ||||||||| ||||| || | ||||||||| |
Sbjct 21 GATGGAAGGAAGAAGGATTACGGCAAGCCCTAGACCTTGTAGTGG-A--AGAAGAGTTGT 77
Query 340 TGCTAAGAAGAGGTCTCGTCCCGATGGATTCGTCAATAGCGTTAAAAAGCTTCAACGCCG 399
||||| || |||||||| ||||||||||||||||| || ||||||||||||||||| |
Sbjct 78 GGCTAAAAAAAGGTCTCGACCCGATGGATTCGTCAACAGTGTTAAAAAGCTTCAACGGAG 137
Query 400 AGAAATCTCTTCTCGTATGGATCGAGCTTTCTCAATCAGCACTGCTCAAGAGAGATTCCG 459
||||||||| ||||||| |||||||||||||| || ||||| || || |||||||| ||
Sbjct 138 AGAAATCTCATCTCGTAAAGATCGAGCTTTCTCTATTAGCACCGCCCAGGAGAGATTTCG 197
Query 460 CAATATGCGTCTCGTGGAGCAATATGATACGCATGATCCTAAA-GGATACTGTTTAGTAT 518
|| |||||||||||||||||||||||||| || ||||| ||| || ||||| |||| |
Sbjct 198 TAACATGCGTCTCGTGGAGCAATATGATACTCACGATCC-AAAGGGGCACTGTCTAGT-T 255
Query 519 -CATTACC-TAACTTGTTGAAACGAAGC-AAAGTTATTGAGATTGTTGCTGCTC-GTGAC 574
||||||| | ||| ||||| ||| | |||||||| ||||||||||| || | | |||
Sbjct 256 GCATTACCGT-TTTTGATGAAAAGAA-CTAAAGTTATCGAGATTGTTGCCGC-CAGGGAC 312
Query 575 ATTGTCTTTGCTCTTACTCTA-TCTGGTGTCTGTGCATCTTTTAGCAGAGAGACGAATAA 633
||||| ||||| ||| ||| | |||||||| || ||| ||||||| |||||| |||| |
Sbjct 313 ATTGTTTTTGCGCTTGCTC-ATTCTGGTGTTTGCGCAGCTTTTAGTAGAGAGTCGAA-CA 370
Query 634 AAAG-GTTTGCTTTTTAAATGTTAGTCCTGATGAAGTCATTC-GGAGTTTGTTCTACAAC 691
|||| | |||||||||||||||||||| |||||||||| || |||| ||||||||||||
Sbjct 371 AAAGAATATGCTTTTTAAATGTTAGTCCAGATGAAGTCA-TCAGGAGCTTGTTCTACAAC 429
Query 692 AAGAACAATGATTCTCTCATTACTGTTTCTGTTTACGCCTCTGACAATTACAGCTCTTTG 751
|| ||||||||||||||||| || ||||||||||| || || ||||||| ||||||||||
Sbjct 430 AAAAACAATGATTCTCTCATCACAGTTTCTGTTTATGCTTCAGACAATTTCAGCTCTTTG 489
Query 752 AAATGCAGATCCACTAGAATCGAATATATTCTGAGGGGTCAAG-CAGACGCAGGATTTCC 810
||||||||||||||| |||| || ||||||||||| |||| || |||| ||||| ||| |
Sbjct 490 AAATGCAGATCCACTCGAATTGAGTATATTCTGAGAGGTC-AGCCAGATGCAGGGTTTGC 548
Query 811 TCTTTTTGAGTCTGAGTCACTAAAGTGGCCAGGTTTTGTTGAGTTTGATGATGTTAATGG 870
||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 549 TCTTTTTGAGTCTGAATCATTAAAGTGGCCTGGTTTTGTTGAGTTTGATGATGTCAATGG 608
Query 871 GAAGGTGCTGACATATTCTGCACAGGATAGTGTTTACAAGGTGTTTGATCTGAAAAACTA 930
||||||||||| |||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct 609 AAAGGTGCTGACTTATTCTGCGCAGGACAGTGTGTACAAGGTTTTTGATCTGAAAAACTA 668
Query 931 TGCCTTGCTATATTCGATATCAGACAAAAATGTACAAGAAATTAAGATCAGTCCAGGGAT 990
| ||||||||||||||||||| |||||||| || |||||||| ||||||||||||||
Sbjct 669 CACAATGCTATATTCGATATCAGATAAAAATGTTCAGGAAATTAAAATCAGTCCAGGGAT 728
Query 991 AATGCTGTTGATTTTCAAGAGAGCTGCGAGTCATGTTCCTTTGAAGATTCTATCAATCGA 1050
|||| | |||| |||||||||||||| ||||| |||||| |||||||||| || || ||
Sbjct 729 AATGTTACTGATCTTCAAGAGAGCTGCCAGTCACGTTCCTCTGAAGATTCTGTCGATAGA 788
Query 1051 AGATGGCACTCTTCTGAAGTCCTTCCATCATTTGCTTCACCGAAATAAGAAAGTTGATTT 1110
||||||||| |||| ||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 789 AGATGGCACAGTTCTCAAGTCCTTCAATCATTTGCTTCACCGAAACAAGAAAGTTGATTT 848
Query 1111 CATTGAACAATTCAATGA-AAAGCTTCTAGTTAAGCAAGAGAACGAGAATCTACAAATAC 1169
|||||||||||||||||| ||| ||||| |||||||||||||| ||||| || ||||| |
Sbjct 849 CATTGAACAATTCAATGAGAAA-CTTCTTGTTAAGCAAGAGAATGAGAACCTCCAAATTC 907
Query 1170 TTGACGTTC-GAAATGCTGAGCTGATAGAAGTTAGCAGAACTGACTTCATGACACCATCA 1228
||||||| | ||||||||||||| || |||||||| ||| |||| ||||||||||| ||
Sbjct 908 TTGACGT-CAGAAATGCTGAGCTAATGGAAGTTAGTAGAGCTGAGTTCATGACACCGTCT 966
Query 1229 GCATTCATATTTTTGTATGAGAATCAGTTGTTTCTAACATTCAGGAACCGAAATGTTTCT 1288
|||||||||||| |||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 967 GCATTCATATTTCTGTATGAGAACCAGTTGTTTCTGACATTCAGGAATCGAAATGTTTCT 1026
Query 1289 GTGTGGAATTTCCGCGGAGAGCTTGTGACCTCGTTTGAGGATCATCTTCTTTGGCATCCA 1348
||||||||||| ||||||||||| ||||| || |||||||| |||||||| |||||||||
Sbjct 1027 GTGTGGAATTTTCGCGGAGAGCTCGTGACTTCCTTTGAGGACCATCTTCTATGGCATCCA 1086
Query 1349 GACTGTAACACAAACAATATCTACATAACAAGCGATCAAGATCTGATCATCTCATATTGC 1408
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 1087 GACTGTAACACAAATAATATCTACATAACAAGTGATCAAGATCTGATCATCTCGTACTGC 1146
Query 1409 AAGGCAGATACTGAAGATCAGTGGATAGAAGGAAATGCGGGGTCGATTAACATAAGCAAT 1468
|| |||||||| |||||||||||||||||||||||||| || ||||| || || ||||||
Sbjct 1147 AAAGCAGATACCGAAGATCAGTGGATAGAAGGAAATGCTGGATCGATCAATATCAGCAAT 1206
Query 1469 ATCTTGACTGGTAAATGCTTAGCTAAGATAAAAGCAAATAATGGTCCTCCTAAGGAAGA- 1527
|| |||||||| |||||||||||||| || | | ||| | ||| ||||| || |||||
Sbjct 1207 ATATTGACTGGGAAATGCTTAGCTAAAATTACACCAAGCAGTGGACCTCCAAAAGAAGAT 1266
Query 1528 G-GA-CTGCAGCAGTAGT-GATTTGGGGAATTCCTCTC-G-AAGGA-GAAGTGCGGTTGC 1581
| || | ||||||||||| | |||||| || ||| | || || ||| ||||| ||
Sbjct 1267 GAGAGCAGCAGCAGTAGTTG-TTTGGGAAAGAACTCAAAGCAAAGAAGAAACGCGGTAGC 1325
Query 1582 TGAGGCTTTGGAAGACATAACCGCTCTCTTCTACGACGAAGAACGGAATGAAATATACAC 1641
||| ||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct 1326 TGAAGCTTTGGAAGACATAACCGCTCTTTTCTATGACGAAGAACGCAATGAGATATACAC 1385
Query 1642 AGGAAACAGACACGGCCTCCTCCATGTCTGGTCTAATTGA 1681
|||||||||||||||||| | ||||| ||||| ||||||
Sbjct 1386 AGGAAACAGACACGGCCTTGTTCATGTGTGGTCCAATTGA 1425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71266848395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5