BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38640.1
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482873 jgi|Araly1|482873|fgenesh2_kg.4__1933__AT2G38640.1 1214 0.0
> Ahg482873 jgi|Araly1|482873|fgenesh2_kg.4__1933__AT2G38640.1
Length=801
Score = 1214 bits (657), Expect = 0.0
Identities = 759/806 (94%), Gaps = 15/806 (2%)
Strand=Plus/Plus
Query 3 CACATTCAAACATCATCAACTTATCGATCTTCTCC-AACAAGAATCATCAAAGCCCAAAG 61
||||| |||||||||||||| || ||||||||| ||||||||||||||||||||||||
Sbjct 1 CACATACAAACATCATCAAC---TC-ATCTTCTCCAAACAAGAATCATCAAAGCCCAAAG 56
Query 62 AAACACAACAGAGAAT---aa-aaaaaGAAATGACAAAAGTTCACCCAAAATTCCCAAGC 117
|||||||||||||||| || ||||||| |||||||||||||||||||||||||||| |
Sbjct 57 AAACACAACAGAGAATACAAACAAAAAGAGATGACAAAAGTTCACCCAAAATTCCCAAAC 116
Query 118 ACATGCGAAGAGAGCTTGTGTGATAGCAAAGCAGCAGTTGTTTTAACGGTGTGGAAGAAG 177
|||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||||
Sbjct 117 ACATGCGAAGAGAGCTTGTGTGATAGTAAAGCAGCGGTGGTTTTAACAGTGTGGAAGAAG 176
Query 178 TCCCTTCTCTTCAACTGCGACGGATTCACGGTTTACAACGCCAATGGAGAGCTTGTCTTT 237
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 177 TCCCTTCTCTTCAACTGCGACGGATTCACGGTCTACAACGCCAATGGAGAGCTTGTCTTT 236
Query 238 AGAGTTGACAACTACATGAATTGTCCTAGAGACAACATCGTCCTTATGGATGCTTCCGGC 297
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AGGGTTGACAACTACATGAATTGTCCTAGAGACAACATCGTCCTTATGGATGCTTCCGGC 296
Query 298 TTTCCCCTCCTCTCCATTCGCCGCAAGAAGTTGAGTCTTGGAGATTGCTGGATGGTATAC 357
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTTCCCCTCCTCTCTATCCGCCGCAAGAAGTTGAGTCTTGGAGATTGCTGGATGGTATAC 356
Query 358 GATGGAGAAACAGAGAGAGATCCAATATTCACGGCGAGAAAGAACGTTAGCATAATATCT 417
|||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| |
Sbjct 357 GATGGAGAAACAGAGAGAGACCCAATATTGACGGCGAGAAAGAACGTTAACATAATAACA 416
Query 418 AACCGGAAAAGCTTGGCGTGGGTTAGCGCAAAGAAGACGGTGTTGTACGAGATAGAAGGA 477
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 417 AACCGGAGGAGCTTGGCGTGGGTTAGCGCGAAGAAGACGGTGTTGTACGAGATAGAAGGA 476
Query 478 TCTTACGGTCAAAGAAGCTGCAAAATATTGGATGAGAGGAGGAACAAGAAGAAAACGGCG 537
|| ||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 477 TCGTACAGTCAGAGAAGCTGCAAAATATTGGACGAGAGGAGGAACAAGAAGAAAACGGCG 536
Query 538 GAGATCAAGAGGAAAGAAACGGTGATCGGAGGAGTTGCCTTTGGCAAAGATGTCTATAAG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 537 GAGATCAAGAGGAAAGAAACGGTGATCGGAGGAGTTGCCTTTGGCAAAGATGTGTTTAAG 596
Query 598 CTTATCGTTGAATCGGAGATGGAACCTCGTGTGGCCATGGCACTTACCATCATCCTCGAC 657
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 597 CTTATAGTTGAATCGGAGATGGAGCCTCGTGTGGCCATGGCACTTACCATCATCCTCGAC 656
Query 658 CAAATGTTTCGATCTTCTTGattttcattttttt-aaggttt-atttttaacgtgtatat 715
||||||||| |||||||||||||||| ||||||| ||||||| ||||||| |||||||||
Sbjct 657 CAAATGTTTAGATCTTCTTGATTTTCTTTTTTTTTAAGGTTTTATTTTTA-CGTGTATAT 715
Query 716 tagttcctttttgtttatgtaatttatGCAATGTGTTCCTTCCTAAATGTACACATGAAT 775
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 716 TAGTTCCTTTTTGTTTATGTAATTTATGCGATGTGTTCCTTCCTAAATGTACACATGAAC 775
Query 776 A---GAGAACtttttttttCGTATTG 798
| |||||||||||||||||| |||
Sbjct 776 AACAGAGAACTTTTTTTTTCGTTTTG 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29507137758
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5