BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G38660.1 Length=1335 Score E Sequences producing significant alignments: (Bits) Value Ahg482876 jgi|Araly1|482876|fgenesh2_kg.4__1936__AT2G38660.3 1949 0.0 > Ahg482876 jgi|Araly1|482876|fgenesh2_kg.4__1936__AT2G38660.3 Length=1335 Score = 1949 bits (1055), Expect = 0.0 Identities = 1247/1335 (93%), Gaps = 32/1335 (2%) Strand=Plus/Plus Query 1 TCACTCGTTGAATCCTAAACTCCGGTATGCCTAGCGATATTTTTCAACGCCATTGACGAC 60 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 7 TCACTCGTTGAATCCTAAACTCCGCTATGCCTAGCGATATTTTTCAACGCCATTGACGAC 66 Query 61 GCTTTATATA-C-C----ACTG---TTTT-G---AG-T-ATGTTAATGATCGCGAGGAAA 105 ||||||||| | | |||| |||| | | | ||||||||||||||||||||| Sbjct 67 ACTTTATATACCACTGTGACTGTTCTTTTAGTTTCGATCATGTTAATGATCGCGAGGAAA 126 Query 106 GCTTTGGCCTCGGCGCATACTAAGGCGT-TTCGTTTGGCAACAAGGGATGTACATTGCTT 164 ||||||||||| ||||||| |||||| | |||||||| |||||||||| |||||||| || Sbjct 127 GCTTTGGCCTCAGCGCATAGTAAGGC-TATTCGTTTGACAACAAGGGACGTACATTGTTT 185 Query 165 TAGTTCCATCTTAGTGTCTCCTCCTCTCGTGTCACTTGACTTGCCTGAAAATTGGATTCC 224 ||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| Sbjct 186 TAGTTCCATCTTAGTGTCTCCTCCTCTGGTGTCCCTTGACTTGCCTGAAGATTGGATTCC 245 Query 225 TTACTCTGATCCTCCACCTCCTGTTTCCTTTGAGACTGAACAGAAGACTGTGGTGATAGA 284 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 246 TTACTCTGATCCTCTACCACCTGTTTCCTTTGAGACTGAACAGAAGACTGTGGTGATAGA 305 Query 285 TGGTAATGTTATCGCTGAGGAAATCAGAACAAAGATTATTAGTGAAGTGGGGAAGATGAA 344 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 306 TGGAAATGTTATCGCTGAGGAAATTAGAACAAAGATTATTAGTGAAGTGGGGAAGATGAA 365 Query 345 AAAGGCTGTTGGAAAAGTCCCTGGTCTTGCTGTTGTTTTGGTTGGTGAACAAAGAGACTC 404 |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 366 AAAGGCTGTTGGAAAAGTCCCTGGTCTTGCCGTTGTTTTGGTTGGTCAACAAAGAGACTC 425 Query 405 GCAAACTTATGTTCGCAACAAAATTAAAGCTTGTGAAGAAACTGGCATTAAATCTGTTTT 464 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 426 CCAAACTTATGTTCGCAACAAAATTAAAGCTTGTGAAGAAACTGGCATTAAATCTGTTTT 485 Query 465 GGCTGAATTACCAGAGGATTGTACTGAAGGACAGATTATCAGTGTATTGAGAAAA-TTCA 523 ||||||||| ||||||||||||||||||||||||||| | ||| |||||| |||| |||| Sbjct 486 GGCTGAATTGCCAGAGGATTGTACTGAAGGACAGATTCTTAGTATATTGA-AAAATTTCA 544 Query 524 ATGAAGACACGTCTATTCACGGAATTCTTGTGCAACTTCCTTTACCCCAACATCTTAATG 583 |||||||||| || ||||| || ||||||||||| ||||| || |||||||||||| ||| Sbjct 545 ATGAAGACACTTCCATTCATGGGATTCTTGTGCAGCTTCCGTTGCCCCAACATCTTGATG 604 Query 584 AATCAAAAATCTTGAATATGGTGAGATTGGAGAAAGATGTTGATGGGTTTCATCCATTAA 643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 AATCAAAAATCTTGAATATGGTGAGATTGGAGAAAGATGTTGATGGGTTTCATCCATTAA 664 Query 644 ACGTGGGGAATCTTGCAATGAGAGGGAGGGAACCGCTGTTTGTATCTTGCACTCCTAAGG 703 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 665 ACGTGGGAAATCTTGCAATGAGAGGGAGGGAACCGCTGTTTGTATCTTGCACTCCTAAGG 724 Query 704 GCTGTGTGGAGTTGTTGATAAGAACGGGTGTTGAAATAGCAGGAAAAAATGCTGTGGTCA 763 ||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| | Sbjct 725 GCTGTGTGGAGTTGTTGATAAGAGCAGGCGTTGAAATAGCAGGAAAAAATGCTGTGGTGA 784 Query 764 TAGGCAGAAGCAACATCGTTGGACTACCAATGTCTTTATTATTGCAGAGGCATGACGCGA 823 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 785 TAGGAAGAAGCAACATCGTTGGACTACCAATGTCTTTATTATTGCAGAGGCATGACGCGA 844 Query 824 CAGTAAGCACGGTGCATGCGTTTACAAAGGATCCAGAGCACATTACTAGGAAGGCGGATA 883 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 845 CAGTAAGCACGGTGCATGCGTTTACAAAGGATCCAGAGCACATTACTAGGAAGGCGGATA 904 Query 884 TCGTTATAGCAGCAGCGGGTATACCTAATTTAGTTCGTGGAAGTTGGCTTAAGCCTGGAG 943 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 905 TCGTTATAGCAGCAGCGGGTATACCCAATTTAGTTCGTGGAAGTTGGCTCAAGCCTGGAG 964 Query 944 CAGTTGTCATTGATGTTGGAACAACTCCAGTCGAGGATAGTAGCTGTGAGTTTGGTTACC 1003 ||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| Sbjct 965 CAGTTGTCATTGATGTTGGAACATCTCCAGTTGAGGATAGTAGCTGTGAGTATGGTTACC 1024 Query 1004 GTCTTGTCGGGGATGTATGTTACGAGGAAGCGTTAGGTGTTGCCTCGGCTATCACTCCCG 1063 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 1025 GTCTTGTCGGGGATGTATGTTACGAGGAAGCTTTAGGTGTTGCCTCGGCTATCACTCCTG 1084 Query 1064 TACCGGGAGGAGTTGGACCTATGACGATCACCATGCTACTATGCAATACTTTGGAGGCTG 1123 | || |||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct 1085 TTCCTGGAGGAGTTGGACCAATGACGATCACCATGCTACTATGCAATACTTTAGATGCTG 1144 Query 1124 CTAAGCGGATCTTCCTCTGAGT-ATGGTATCTCTGTCTATTACTAAATATATTTTGTAAT 1182 |||||||||| ||||||||| | ||||||||||||||||||||||||| | || |||| Sbjct 1145 CTAAGCGGATATTCCTCTGA-TCATGGTATCTCTGTCTATTACTAAAT-T-TT--GTAAA 1199 Query 1183 GTTAGATAGGAGACTCCATGCTGT-TCG-AGTTATTAACGATCTCTTT---T--GAATTA 1235 ||||||||||||||||||| ||| | | |||||||||| |||||||| | |||||| Sbjct 1200 ATTAGATAGGAGACTCCATGTTGTGTTGGAGTTATTAACAATCTCTTTCAATTTGAATTA 1259 Query 1236 TTGTATAATAGACCTGGCGATTGTGATGCCATGGTTTATCCTAACTCATCAGCATCTTTA 1295 || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1260 TTATATAATAGACCTGGCGATTGTGATGCCATGGTTTATCCTAACTCATCAACATCTTTA 1319 Query 1296 GCATCAAGTTCAACT 1310 ||||||||||||||| Sbjct 1320 GCATCAAGTTCAACT 1334 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49941021270 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5