BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38660.1
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482876 jgi|Araly1|482876|fgenesh2_kg.4__1936__AT2G38660.3 1949 0.0
> Ahg482876 jgi|Araly1|482876|fgenesh2_kg.4__1936__AT2G38660.3
Length=1335
Score = 1949 bits (1055), Expect = 0.0
Identities = 1247/1335 (93%), Gaps = 32/1335 (2%)
Strand=Plus/Plus
Query 1 TCACTCGTTGAATCCTAAACTCCGGTATGCCTAGCGATATTTTTCAACGCCATTGACGAC 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 7 TCACTCGTTGAATCCTAAACTCCGCTATGCCTAGCGATATTTTTCAACGCCATTGACGAC 66
Query 61 GCTTTATATA-C-C----ACTG---TTTT-G---AG-T-ATGTTAATGATCGCGAGGAAA 105
||||||||| | | |||| |||| | | | |||||||||||||||||||||
Sbjct 67 ACTTTATATACCACTGTGACTGTTCTTTTAGTTTCGATCATGTTAATGATCGCGAGGAAA 126
Query 106 GCTTTGGCCTCGGCGCATACTAAGGCGT-TTCGTTTGGCAACAAGGGATGTACATTGCTT 164
||||||||||| ||||||| |||||| | |||||||| |||||||||| |||||||| ||
Sbjct 127 GCTTTGGCCTCAGCGCATAGTAAGGC-TATTCGTTTGACAACAAGGGACGTACATTGTTT 185
Query 165 TAGTTCCATCTTAGTGTCTCCTCCTCTCGTGTCACTTGACTTGCCTGAAAATTGGATTCC 224
||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 186 TAGTTCCATCTTAGTGTCTCCTCCTCTGGTGTCCCTTGACTTGCCTGAAGATTGGATTCC 245
Query 225 TTACTCTGATCCTCCACCTCCTGTTTCCTTTGAGACTGAACAGAAGACTGTGGTGATAGA 284
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 246 TTACTCTGATCCTCTACCACCTGTTTCCTTTGAGACTGAACAGAAGACTGTGGTGATAGA 305
Query 285 TGGTAATGTTATCGCTGAGGAAATCAGAACAAAGATTATTAGTGAAGTGGGGAAGATGAA 344
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 306 TGGAAATGTTATCGCTGAGGAAATTAGAACAAAGATTATTAGTGAAGTGGGGAAGATGAA 365
Query 345 AAAGGCTGTTGGAAAAGTCCCTGGTCTTGCTGTTGTTTTGGTTGGTGAACAAAGAGACTC 404
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 366 AAAGGCTGTTGGAAAAGTCCCTGGTCTTGCCGTTGTTTTGGTTGGTCAACAAAGAGACTC 425
Query 405 GCAAACTTATGTTCGCAACAAAATTAAAGCTTGTGAAGAAACTGGCATTAAATCTGTTTT 464
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 CCAAACTTATGTTCGCAACAAAATTAAAGCTTGTGAAGAAACTGGCATTAAATCTGTTTT 485
Query 465 GGCTGAATTACCAGAGGATTGTACTGAAGGACAGATTATCAGTGTATTGAGAAAA-TTCA 523
||||||||| ||||||||||||||||||||||||||| | ||| |||||| |||| ||||
Sbjct 486 GGCTGAATTGCCAGAGGATTGTACTGAAGGACAGATTCTTAGTATATTGA-AAAATTTCA 544
Query 524 ATGAAGACACGTCTATTCACGGAATTCTTGTGCAACTTCCTTTACCCCAACATCTTAATG 583
|||||||||| || ||||| || ||||||||||| ||||| || |||||||||||| |||
Sbjct 545 ATGAAGACACTTCCATTCATGGGATTCTTGTGCAGCTTCCGTTGCCCCAACATCTTGATG 604
Query 584 AATCAAAAATCTTGAATATGGTGAGATTGGAGAAAGATGTTGATGGGTTTCATCCATTAA 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 AATCAAAAATCTTGAATATGGTGAGATTGGAGAAAGATGTTGATGGGTTTCATCCATTAA 664
Query 644 ACGTGGGGAATCTTGCAATGAGAGGGAGGGAACCGCTGTTTGTATCTTGCACTCCTAAGG 703
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 ACGTGGGAAATCTTGCAATGAGAGGGAGGGAACCGCTGTTTGTATCTTGCACTCCTAAGG 724
Query 704 GCTGTGTGGAGTTGTTGATAAGAACGGGTGTTGAAATAGCAGGAAAAAATGCTGTGGTCA 763
||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| |
Sbjct 725 GCTGTGTGGAGTTGTTGATAAGAGCAGGCGTTGAAATAGCAGGAAAAAATGCTGTGGTGA 784
Query 764 TAGGCAGAAGCAACATCGTTGGACTACCAATGTCTTTATTATTGCAGAGGCATGACGCGA 823
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 TAGGAAGAAGCAACATCGTTGGACTACCAATGTCTTTATTATTGCAGAGGCATGACGCGA 844
Query 824 CAGTAAGCACGGTGCATGCGTTTACAAAGGATCCAGAGCACATTACTAGGAAGGCGGATA 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 CAGTAAGCACGGTGCATGCGTTTACAAAGGATCCAGAGCACATTACTAGGAAGGCGGATA 904
Query 884 TCGTTATAGCAGCAGCGGGTATACCTAATTTAGTTCGTGGAAGTTGGCTTAAGCCTGGAG 943
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 905 TCGTTATAGCAGCAGCGGGTATACCCAATTTAGTTCGTGGAAGTTGGCTCAAGCCTGGAG 964
Query 944 CAGTTGTCATTGATGTTGGAACAACTCCAGTCGAGGATAGTAGCTGTGAGTTTGGTTACC 1003
||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||
Sbjct 965 CAGTTGTCATTGATGTTGGAACATCTCCAGTTGAGGATAGTAGCTGTGAGTATGGTTACC 1024
Query 1004 GTCTTGTCGGGGATGTATGTTACGAGGAAGCGTTAGGTGTTGCCTCGGCTATCACTCCCG 1063
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1025 GTCTTGTCGGGGATGTATGTTACGAGGAAGCTTTAGGTGTTGCCTCGGCTATCACTCCTG 1084
Query 1064 TACCGGGAGGAGTTGGACCTATGACGATCACCATGCTACTATGCAATACTTTGGAGGCTG 1123
| || |||||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 1085 TTCCTGGAGGAGTTGGACCAATGACGATCACCATGCTACTATGCAATACTTTAGATGCTG 1144
Query 1124 CTAAGCGGATCTTCCTCTGAGT-ATGGTATCTCTGTCTATTACTAAATATATTTTGTAAT 1182
|||||||||| ||||||||| | ||||||||||||||||||||||||| | || ||||
Sbjct 1145 CTAAGCGGATATTCCTCTGA-TCATGGTATCTCTGTCTATTACTAAAT-T-TT--GTAAA 1199
Query 1183 GTTAGATAGGAGACTCCATGCTGT-TCG-AGTTATTAACGATCTCTTT---T--GAATTA 1235
||||||||||||||||||| ||| | | |||||||||| |||||||| | ||||||
Sbjct 1200 ATTAGATAGGAGACTCCATGTTGTGTTGGAGTTATTAACAATCTCTTTCAATTTGAATTA 1259
Query 1236 TTGTATAATAGACCTGGCGATTGTGATGCCATGGTTTATCCTAACTCATCAGCATCTTTA 1295
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1260 TTATATAATAGACCTGGCGATTGTGATGCCATGGTTTATCCTAACTCATCAACATCTTTA 1319
Query 1296 GCATCAAGTTCAACT 1310
|||||||||||||||
Sbjct 1320 GCATCAAGTTCAACT 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49941021270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5