BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38670.1
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934616 jgi|Araly1|934616|scaffold_402604.1 2239 0.0
> Ahg934616 jgi|Araly1|934616|scaffold_402604.1
Length=1307
Score = 2239 bits (1212), Expect = 0.0
Identities = 1272/1302 (98%), Gaps = 0/1302 (0%)
Strand=Plus/Plus
Query 122 TTCTCGTGTTCGTAAGCAAAAATGGTTTGGGAGAAAGAGAAGATCGTCGGAAGTTGTATA 181
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTTGTGTTTGTAAGCAAAAATGGTTTGGGAGAAAGAGAAGATCGTCGGAAGTTGTATA 60
Query 182 GTCGGAGGAGCTGCGTTCGCCGTCGGAGCTTCTTTCCTTCATCTTTTCCTTAAAGGTGAG 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCGGAGGAGCTGCGTTCGCCGTCGGAGCTTCTTTCCTTCATCTTTTCCTTAAAGGTGAG 120
Query 242 CTTCCGTTAGGATTAGGTTTAGGTTTGTCTTGTCCATGGCGCATTTTGAGAAAACGAAAA 301
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 121 CTTCCGTTAGGATTAGGTTTAGGTTTGTCTTCTCCATGGCGCATTTTGAGAAAACAAAAA 180
Query 302 CCTGTTCGCGTTTACATGGATGGTTGCTTCGATATGATGCACTATGGCCACTGCAACGCT 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTGTTCGCGTTTACATGGATGGTTGCTTCGATATGATGCACTATGGCCACTGCAACGCT 240
Query 362 CTTCGTCAAGCTCGTGCTCTCGGTGACCAATTGGTCGTCGGTGTTGTTTCCGACGAAGAA 421
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 CTTCGTCAAGCTCGTGCTCTCGGTGACCAATTGGTGGTCGGTGTTGTTTCCGACGAAGAA 300
Query 422 ATTATAGCCAACAAAGGACCTCCTGTTACTCCTCTTCATGAAAGAATGACAATGGTGAAA 481
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCATAGCTAACAAAGGACCTCCTGTTACTCCTCTTCATGAAAGAATGACAATGGTGAAA 360
Query 482 GCTGTGAAGTGGGTGGATGAAGTTATATCTGATGCTCCTTACGCTATTACGGAAGATTTC 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCTGTGAAGTGGGTGGATGAAGTTATATCTGATGCTCCTTACGCTATTACGGAAGATTTC 420
Query 542 ATGAAGAAATTGTTCGATGAGTATCAGATCGATTACATTATCCATGGTGATGATCCTTGT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATGAAGAAATTGTTCGATGAGTATCAGATCGATTACATTATCCATGGTGATGATCCTTGT 480
Query 602 GTTCTTCCTGATGGTACTGATGCTTATGCACTTGCTAAGAAGGCTGGTCGTTACAAGCAG 661
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTTCTTCCTGATGGAACTGATGCTTATGCACTTGCTAAGAAGGCTGGTCGTTACAAGCAG 540
Query 662 ATTAAGCGCACTGAAGGAGTTTCTAGCACTGATATCGTTGGTCGTATGCTTCTTTGTGTA 721
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 ATTAAGCGTACAGAAGGAGTTTCTAGTACTGATATCGTTGGTCGTATGCTTCTTTGTGTA 600
Query 722 AGAGAAAGATCCATTAGTGACACTCATAGTCGTTCCTCTCTGCAAAGGCAATTTAGTCAT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGAGAAAGATCCATTAGTGACACTCATAGTCGTTCCTCTCTGCAAAGGCAATTTAGTCAT 660
Query 782 GGGCATAGTAGCCCAAAGTTTGAGGATGGAGCTTCTTCTGCTGGTACTCGTGTCTCGCAT 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGGCATAGTAGCCCAAAGTTTGAGGATGGAGCTTCTTCTGCTGGTACTCGTGTCTCGCAT 720
Query 842 TTTCTTCCTACTTCCCGCAGGATTGTTCAGTTCTCCAATGGAAAGGGGCCAGGACCTGAT 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTTCTTCCTACTTCCCGCAGGATTGTTCAGTTCTCCAATGGAAAGGGGCCAGGACCTGAT 780
Query 902 GCACGCATTATCTACATAGATGGTGCTTTTGATCTTTTCCATGCTGGCCATGTTGAGATT 961
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCACGCATAATCTACATAGATGGTGCTTTTGATCTTTTCCATGCTGGCCATGTTGAGATT 840
Query 962 CTTAGACGTGCTCGAGAGCTTGGAGACTTTCTTCTTGTTGGTATACATAATGACCAGACT 1021
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 841 CTTAGACGTGCTCGAGAGCTTGGAGACTTTCTTCTTGTTGGAATACATAATGACCAGACT 900
Query 1022 GTCAGTGCTAAACGAGGAGCGCATCGCCCTATTATGAATCTCCATGAAAGGAGCTTAAGC 1081
|||||||||||| ||||||| ||||| || || |||||||||||||||||||||||||||
Sbjct 901 GTCAGTGCTAAAAGAGGAGCTCATCGTCCAATCATGAATCTCCATGAAAGGAGCTTAAGC 960
Query 1082 GTTCTGGCGTGCCGCTACGTGGATGAGGTGATAATTGGTGCTCCATGGGAAGTGTCGAGA 1141
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTTCTGGCATGCCGTTACGTGGATGAGGTGATAATTGGTGCTCCATGGGAAGTGTCGAGA 1020
Query 1142 GATACGATCACGACATTTGACATCTCGTTGGTGGTACATGGGACAGTAGCCGAGAGCGAT 1201
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1021 GATACGATCACGACATTTGACATTTCGTTGGTGGTACATGGGACAGTAGCCGAGAGCGAT 1080
Query 1202 GATTTTCGAAAGGAGGAAGATAATCCGTATTCTGTACCAATTAGCATGGGCATATTCCAA 1261
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GATTTTCAAAAGGAGGAAGATAATCCGTATTCTGTACCAATTAGCATGGGCATATTCCAA 1140
Query 1262 GTTCTAGATAGCCCTCTTGATATCACAACGTCCACCATAATCAGGAGGATTGTAGCAAAC 1321
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 ATTCTAGAAAGCCCTCTTGATATCACAACGTCCACCATAATCAGGAGGATTGTAGCAAAC 1200
Query 1322 CATGAAGCTTATCAGAAACGTAATGCGAAGAAGGAAGCTAGCGAGAAAAAGTATTACGAG 1381
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1201 CATGAAGCTTATCAGAAACGTAATGCGAAAAAGGAAGCTAGTGAGAAAAAGTACTACGAG 1260
Query 1382 CAGAAGTCGTTTGTGTCCGGAGACTGATAGAGCTATATGCTT 1423
|||||||||||||||||||| |||||||| |||||| |||||
Sbjct 1261 CAGAAGTCGTTTGTGTCCGGGGACTGATACAGCTATTTGCTT 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61706196900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5