BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G38680.1

Length=1068
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482879 jgi|Araly1|482879|fgenesh2_kg.4__1939__AT2G38680.1         536    1e-151


> Ahg482879 jgi|Araly1|482879|fgenesh2_kg.4__1939__AT2G38680.1
Length=786

 Score =  536 bits (290),  Expect = 1e-151
 Identities = 305/312 (98%), Gaps = 2/312 (1%)
 Strand=Plus/Plus

Query  599  AGGTTTTGAGGCAGAACCTTGATAGAACTTTCAAGAATGTTAAGATTGTATCTAACAGGA  658
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct  473  AGGTTTTGAGGCAGAACCTTGGTAGAACTTTCAAGAATGTTAAGATTGTATCTAACTGGA  532

Query  659  TGGTGTTCAATGATGATGGACAGCTCGTGTCTTTCAAAGGAAAGCTAATTCACGTGCTAA  718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  533  TGGTGTTCAATGATGATGGACAGCTCGTGTCTTTCAAAGGAAAGCTAATTCACGTGCTAA  592

Query  719  ACAAAAACGAACACGCTTTAGACATGGCTGCTCCACTTCATGATCGACTTGGTGTTGACA  778
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ACAAAAACGAACACGCTTTAGACATGGCTGCTCCACTTCATGATCGACTTGGTGTTGACA  652

Query  779  TTGGTGAGGAAGATGAAGAAAATGTAAACATGAAAGAGA-GAAGGAATGTTTTGCTTATG  837
            ||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||
Sbjct  653  TTGGTGAGGAAGATGAAGAAAATGTAAACATGAAACA-ACGAACGAATGTTTTGCTTATG  711

Query  838  GGAGATCATTTGGGGGATTTAAGGATGTCTGATGGACTGGATTATGAGACTCGGATATCT  897
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  712  GGAGATCATTTGGGGGATTTAAGGATGTCTGATGGACTGGATTATGAAACTCGGATATCT  771

Query  898  ATTGGGTTTCTG  909
            ||||||||||||
Sbjct  772  ATTGGGTTTCTG  783


 Score =  442 bits (239),  Expect = 3e-123
 Identities = 268/282 (95%), Gaps = 2/282 (1%)
 Strand=Plus/Plus

Query  307  CAAGGAGACGCATATTACGATGCTAAGAGGCAAGCCTTATATGATCACTATCATCCTCTT  366
            |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  120  CAAGGAAACGCATATTACGATGCTAAGAGGCAAGCATTATATGATCACTATCATCCTCTT  179

Query  367  GAGATTTCTCCTGTGATTCCCATTGATGAGAAAACCAAACTCATGGAAGAATGGTGGGGT  426
            |||||||||||||| ||||||||||||||||||||||||||||||||||  |||||| ||
Sbjct  180  GAGATTTCTCCTGTTATTCCCATTGATGAGAAAACCAAACTCATGGAAG--TGGTGGAGT  237

Query  427  AAAACTCATGAGCTTCTCATTGAGGGAGGTTTGACATATGACGCAATCAAGAAATCTGTT  486
            |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  238  AAAACTCATGAGCTTCTCATTGAGGGAGGTTTAACATATGAGGCAATCAAGAAATCTGTT  297

Query  487  GCGAATTCTTCCATAGCTTTTAGAGAAGGTGTGTCTGAACTTTTCGAATTTTTGGAGAAA  546
            |||||||| |||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct  298  GCGAATTCCTCCATAGCTTTTAGAGAAGGTGTGACTGAGCTTTTTGAATTTTTGGAGAAA  357

Query  547  AAGGAGATCCCTGTTCTGATTTTTTCAGCAGGACTTGCTGAT  588
            ||||||||||| |||||||| |||||||||||||||||||||
Sbjct  358  AAGGAGATCCCAGTTCTGATATTTTCAGCAGGACTTGCTGAT  399


 Score =  130 bits (70),  Expect = 2e-29
 Identities = 74/76 (97%), Gaps = 0/76 (0%)
 Strand=Plus/Plus

Query  149  CTGTGATAGCTCATCCTCGAGCTCTCACCGATAAGATGACTCTAATTCGTGACGCGGGTC  208
            ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct  11   CTGTGATAGCTCATCCTCGAGCTCTCACCGATAAGATAACCCTAATTCGTGACGCGGGTC  70

Query  209  CTTCCAAATTCCAGGT  224
            ||||||||||||||||
Sbjct  71   CTTCCAAATTCCAGGT  86



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39762202431


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5