BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G38690.1

Length=935
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg901790 jgi|Araly1|901790|Al_scaffold_0004_2440                    848    0.0  


> Ahg901790 jgi|Araly1|901790|Al_scaffold_0004_2440
Length=576

 Score =  848 bits (459),  Expect = 0.0
 Identities = 541/580 (93%), Gaps = 8/580 (1%)
 Strand=Plus/Plus

Query  86   atgataatggaagaagaacttcaagaGCGTAACAACAATCTCAGCCTCGACGACATTGAT  145
            ||||| || |||||| ||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct  1    ATGATGATCGAAGAACAACTTCAAGAGCGTAACCACAATCTGAGCCTCGAAGACATTGAT  60

Query  146  CTTTCTCTCCTCCGTCTCACTTCACCACCGT-ACGACTACTCTCCTCCATCATCCTTGTT  204
            || |||||||||||||||||||||||| ||| || |||| |||||| |||||||||||||
Sbjct  61   CTATCTCTCCTCCGTCTCACTTCACCA-CGTGACTACTATTCTCCTTCATCATCCTTGTT  119

Query  205  CTCCGCCGATGAAATCACTCCTCCATTGAAACGCGCCTCCCCTGTTTCCGACGAATCCGA  264
            ||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct  120  CTCCGCCGAGGAAATCACCCCTCCGTTGAAACGCGCCTCCCCTGTTTCCGACGAATCCGA  179

Query  265  TCTCCCCAAACGCA-GAAAACTCTCCCCTCAAAACCCAATCTTTACCACTTCTCCTCCTC  323
            |||||||||||||| ||||| |||||||||||||||||||||||  ||| ||||||| ||
Sbjct  180  TCTCCCCAAACGCAGGAAAA-TCTCCCCTCAAAACCCAATCTTTGTCACCTCTCCTCGTC  238

Query  324  TCTTCACTTCCCCGGAAACACAAACTTCCTCTGTTCATGACACGAGCCGGTACACGAATC  383
            |||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct  239  TCTTCATTTCCCCGGAAACACAAACTTCCTCTGTTCATGACCCGACCCGGTACACGAATC  298

Query  384  TCACTAGCTCTGTTTCGG-AGAAGCAAGAAGCGACGCCGTCTGTTACTGATACAGAGACG  442
            |||||||||||||||||| || |||||||| |||||||||||| | ||||||||||||||
Sbjct  299  TCACTAGCTCTGTTTCGGAAG-AGCAAGAAACGACGCCGTCTGATCCTGATACAGAGACG  357

Query  443  ATGAAGATGGTTAACAAATGCGTAGAGGTGATGAATCGTGGAGAGACTAACTATGCTTAT  502
            ||||||||||||||||| ||||| |||  |||||| ||||||||||||||||||||||||
Sbjct  358  ATGAAGATGGTTAACAATTGCGTTGAGAAGATGAAACGTGGAGAGACTAACTATGCTTAT  417

Query  503  gagaaggagcaagagg-agttggaagaagaagaagattgtggaggagggatgaggataga  561
            |||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||
Sbjct  418  GAGAAGGAGCAAGAGGAAG-TGGAAGAAGAAGAAGAATGTGGAGGAGGGATGAGGATAGA  476

Query  562  gagatctggagatGGGTTTGTAATTAGATTGAAGTGTAGATGCAGACAAGCTTTTAGGGT  621
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  477  GAGATCTGGAGATGGGTTTGTAATTAGATTGAAGTGTAAATGCAGACAAGCTTTTAGGGT  536

Query  622  TCTTTTCTCTGATGATCATCTCTACTTCAAGCCTCTCTAA  661
            ||||||||||||||||||||||||||| ||||||||||||
Sbjct  537  TCTTTTCTCTGATGATCATCTCTACTTTAAGCCTCTCTAA  576



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34691854470


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5