BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G38695.3

Length=950
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg901791 jgi|Araly1|901791|Al_scaffold_0004_2441                    542    2e-153
  Ahg347046 jgi|Araly1|347046|fgenesh1_pg.C_scaffold_5000438          80.5    2e-14 


> Ahg901791 jgi|Araly1|901791|Al_scaffold_0004_2441
Length=591

 Score =  542 bits (293),  Expect = 2e-153
 Identities = 358/390 (92%), Gaps = 2/390 (1%)
 Strand=Plus/Plus

Query  94   CAATCTCTGCTACCACATCA-CTTCTCCGTATTCAACCAAAGTCACCGACTTGTTACCTC  152
            ||||||||||||||| || | |||||||||| || |||| |||||||| || ||||||||
Sbjct  46   CAATCTCTGCTACCATAT-AGCTTCTCCGTAGTCCACCATAGTCACCGGCTGGTTACCTC  104

Query  153  CTTGAGTCACAATGTTTCCAACAAATCTGATGCAGAGGCAGAGCGTTCCTGTGATGAAGG  212
            ||| |||||||||| | | || ||||||||||||||| | |||| ||||| |||||||||
Sbjct  105  CTTTAGTCACAATGCTACTAATAAATCTGATGCAGAGTCTGAGCCTTCCTATGATGAAGG  164

Query  213  AGAAATGTTGGATAAGAATAGGATAAGCAAGAAAAACCCGTTTGTTTCGGAAGAGCTTCT  272
            ||||||||||||||||||||||||||||| || ||||||||| ||||| |||||||||||
Sbjct  165  AGAAATGTTGGATAAGAATAGGATAAGCAGGAGAAACCCGTTCGTTTCAGAAGAGCTTCT  224

Query  273  CAAGAAGTTGAAGAGATATGGACTCTCTGGAATATTATCCTATGGGTTACTTAATACAGT  332
            |||||| ||||||||||||||| ||||||||||| | ||||||||| |||||||||| ||
Sbjct  225  CAAGAAATTGAAGAGATATGGAGTCTCTGGAATACTGTCCTATGGGATACTTAATACGGT  284

Query  333  CTATTACTCCACAGCTTTCCTCTTGGTCTGGTTTTATGTGGCTCCAGCACCGGGAAAAAT  392
            ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct  285  CTATTACTCCACAGCTTTCCTCTTGGTGTGGTTTTATGTGGCCCCAGCACCGGGAAAAAT  344

Query  393  GGGTTATCTTGCTGCGGCTGAGAGATTTCTTAAAGTGATGGCCATGGTCTGGGCTGGAAG  452
            |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  345  GGGTTATCTTGCTGCGGCTGAGAGATTTCTTAAAGTTATGGCAATGGTCTGGGCTGGAAG  404

Query  453  CCAAGTTACTAAGCTCATCAGAATCGGAGG  482
            |||||||||||||||||||||||| |||||
Sbjct  405  CCAAGTTACTAAGCTCATCAGAATAGGAGG  434


 Score =  237 bits (128),  Expect = 1e-61
 Identities = 148/158 (94%), Gaps = 0/158 (0%)
 Strand=Plus/Plus

Query  626  GGGCAGTCGCACTTGCACCTATTGTTGATAGAGGATTGTCGTGGTTTACAGTAAAATGCA  685
            ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct  434  GGGCAGTGGCACTTGCACCTATTGTTGATCGAGGATTGTCATGGTTTACAGTAAAATGCA  493

Query  686  ACTTTGAAAGTCAGGGAAAAGCTTTTGGCGCACTGGTTGGGATATGTCTTGGTATGGCTT  745
            | ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct  494  AGTTTGAAAGTCAGGGAAAAGCTTTTGGCGCACTGGTTGGGATATGTCTTGGTCTCGCTT  553

Query  746  TGATGCTATTTATCGTTGTGACACTGCTTTGGGCATAG  783
            ||||||| ||| | |||||||||||||||||| |||||
Sbjct  554  TGATGCTGTTTGTTGTTGTGACACTGCTTTGGTCATAG  591


> Ahg347046 jgi|Araly1|347046|fgenesh1_pg.C_scaffold_5000438
Length=2109

 Score = 80.5 bits (43),  Expect = 2e-14
 Identities = 59/66 (89%), Gaps = 3/66 (5%)
 Strand=Plus/Plus

Query  815   ACAGCATAGATCTGGCT-CCATCACCAAGTTTACTTGTTTTTATCGCCGTGGGAAGTCAT  873
             ||||| ||||||||||| | |||| |||| |||||||||||||||||||||||||||| |
Sbjct  1115  ACAGCCTAGATCTGGCTACTATCATCAAGCTTACTTGTTTTTATCGCCGTGGGAAGTC-T  1173

Query  874   -ATGAT  878
              |||||
Sbjct  1174  CATGAT  1179



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35263698225


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5