BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38700.1
Length=1622
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482881 jgi|Araly1|482881|fgenesh2_kg.4__1941__AT2G38700.1 2534 0.0
Ahg938344 jgi|Araly1|938344|scaffold_502535.1 1376 0.0
> Ahg482881 jgi|Araly1|482881|fgenesh2_kg.4__1941__AT2G38700.1
Length=1587
Score = 2534 bits (1372), Expect = 0.0
Identities = 1525/1596 (96%), Gaps = 21/1596 (1%)
Strand=Plus/Plus
Query 28 CCTTATTTTAATCTCCCACCTGATTTGAGCTGTTTCTTTCTCTTTCGAACTCTCCGTCAC 87
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1 CCTTATTTTAATCTCCCACCTGATTTGAGCTGTTTC--TCTTTTTCGAACTCTCCGTCAC 58
Query 88 TTCCATTTCATTTCTATTTGAATCTTCT--CAAAGCTACACAGATCTCTGAAATCGAAAA 145
|| |||||| || |||||||||||| |||||| ||||||||||| | ||||||
Sbjct 59 TTTCATTTC--CTC-CTTTGAATCTTCTGAGAAAGCT--ACAGATCTCTGGATTCGAAAG 113
Query 146 AGCTTGAGCTGTGTTAATGGCGGAGGAGAAATGGGTGGTGATGGTGACGGCGCAGACTCC 205
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 114 AGCTTGAGCTGTGCTAATGGCGGAGGAGAAATGGGTGGTGATGGTGACGGCACAGACGCC 173
Query 206 AACGAATATCGCCGTGATTAAGTATTGGGGAAAGAGAGATGAGGTTCGGATTCTTCCCAT 265
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 174 GACGAATATCGCCGTGATTAAGTATTGGGGAAAGAGAGATGAGGTTCGGATTCTCCCCAT 233
Query 266 TAATGATAGCATTAGCGTCACGCTTGATCCTGATCACCTCTGTACTCTCACCACCGTCGC 325
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 234 TAACGATAGCATTAGCGTCACGCTTGATCCTGATCACCTCTGTACTCTCACCACCGTCTC 293
Query 326 TGTTAGTCCTTCCTTTGATCGAGATCGAATGTGGCTCAATGGCAAGGAAATCTCGCTTTC 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TGTTAGTCCTTCCTTTGATCGAGATCGAATGTGGCTCAATGGCAAGGAAATCTCGCTTTC 353
Query 386 TGGAAGTAGGTACCAGAATTGCTTGAGGGAAATTCGAAGTCGTGCTGATGATGTAGAAGA 445
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 354 TGGAAGTAGGTACCAGAATTGCTTGAGGGAAATTCGAAGTCGTGCTGATGATGTTGAAGA 413
Query 446 TAAAGAAAAGGGTATCAAGATTGCGAAGAAAGATTGGGAGAAGCTGCATCTGCACATTGC 505
||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct 414 TAAAGAAAAGGGTATCAAGATTGAGAAGAAGGATTGGGAGAAATTGCATCTGCACATTGC 473
Query 506 TTCTCATAACAACTTCCCTACTGCTGCTGGCTTAGCATCTTCTGCTGCTGGTTTTGCTTG 565
||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 474 TTCTCATAATAATTTCCCTACTGCTGCTGGCTTAGCATCTTCAGCTGCTGGTTTTGCTTG 533
Query 566 CTTAGTTTTTGCTCTTGCCAAGTTGATGAATGTAAATGAAGATCCAAGCCAACTTTCTGC 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CTTAGTTTTTGCTCTTGCCAAGTTGATGAATGTAAATGAAGATCCAAGCCAACTTTCTGC 593
Query 626 TATAGCAAGGCAAGGTTCAGGAAGTGCTTGCCGTAGTTTATTTGGGGGATTTGTCAAGTG 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TATAGCAAGGCAAGGTTCAGGAAGTGCTTGCCGTAGTTTATTTGGGGGATTTGTCAAGTG 653
Query 686 GAATATGGGAAACAAAGAAGATGGAAGTGACAGTGTTGCAGTTCAACTGGTAGATGATAA 745
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 654 GAACATGGGAAACAAAGAAGATGGGAGTGACAGTGTTGCAGTTCAACTGGTAGATGATAA 713
Query 746 GCACTGGGATGATCTTGTTATCATTATTGCTGTGGTTAGTTCACGACAGAAGGAAACAAG 805
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 714 GCATTGGGATGATCTTGTTATCATTATTGCTGTGGTTAGTTCACGAGAGAAGGAAACAAG 773
Query 806 CAGCACCTCGGGAATGCGTGAGAGTGTTGAGACAAGTTTGCTTTTACAGCATAGAGCAAA 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CAGCACCTCGGGAATGCGTGAGAGTGTTGAGACAAGTTTGCTTTTACAGCATAGAGCAAA 833
Query 866 GGAAGTTGTCCCAGTACGGATTTTGCAAATGGAAGAAGCTATAAAGAATCGAGATTTCAC 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 834 GGAAGTTGTCCCAGTACGGATTTTGCAAATGGAAGAAGCTATAAAGAATCGAGATTTTAC 893
Query 926 ATCTTTTACAAAATTGACGTGTTCAGACAGTAATCAGTTTCATGCTGTTTGTATGGATAC 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ATCTTTTACAAAATTGACGTGTTCAGACAGTAATCAGTTTCATGCTGTTTGTATGGATAC 953
Query 986 ATCTCCACCCATATTCTACATGAATGACACCTCCCACAGGATAATCAGCTTAGTTGAAAA 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 ATCTCCACCCATATTCTACATGAATGACACCTCCCACAGGATAATCAGCTTAGTTGAAAA 1013
Query 1046 GTGGAACCGTTCTGCCGGTACACCAGAGATTGCTTATACATTTGATGCTGGCCCAAATGC 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GTGGAACCGTTCTGCCGGTACACCAGAGATTGCTTATACATTTGATGCTGGCCCAAATGC 1073
Query 1106 AGT-CATGATTGCAAGAAACAGGAAAGTAGCAGTTGAATTGCTGCAGGGGCTGCTCTACT 1164
||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1074 AGTTC-TGATTGCAAGAAACAGGAAAGTAGCAGTTGAATTGATGCAGGGGCTGCTCTACT 1132
Query 1165 GCTTCCCTCCTAAGCCTGACACAGACATGAAGAGTTACGTACTGGGGGATACATCGATAG 1224
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 1133 GCTTCCCTCCTAAGCCTGACACAGACATGAAGAGTTATGTACTGGGTGATACATCGATTG 1192
Query 1225 TAAAAGAGGCAGGCTTGGAAGGAGAGCTTCCACAAGGAATTAAAGACAAAATTGGAAGTC 1284
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||
Sbjct 1193 TAAAAGAGGCAGGCTTGGAAGGAGAGCTCCCACAAGGAATTAAAGACAAGATTGGAAATC 1252
Query 1285 AGGATCAAAAAGGTGAAGTGAGTTATTTTATATGCAGCAGACCTGGAAGAGGTCCTGTGG 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 AGGATCAAAAAGGTGAAGTGAGTTATTTTATATGCAGCAGACCTGGAAGAGGTCCTGTGG 1312
Query 1345 TGCTTCAAGACCAAACTCAAGCTCTTCTCCATCCTCAAACTGGCCTCCCCAAATAACCAT 1404
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1313 TGCTTCAAGACCAAACTCAAGCCCTTCTCCATCCTCAAACTGGCCTCCCCAAATAACCAT 1372
Query 1405 TTCTATGTCTTGTTGTTACTTCAACTCTGAGATTTGCAACAGCTTCATCTTTTGCTTTGC 1464
|| ||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1373 TTATATGTCTTGTTATTACTGCAACTCTGAGATTTGCAACAGCTTG-TCTTTTGCTTTGC 1431
Query 1465 CAGCTCCAACTCTTGTCCTAAGAGAGCACTCTTCTGAATCTTT-TCCCAATTATTTGTGT 1523
|| ||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 1432 CACCTCTTACTCTTGTCCTAAGAGAGCACTCATCTGAATCTTTCTCT-AATTATTTGTGT 1490
Query 1524 TTACGTACAATT--CTTCTGCATCGGGTGCAAAAAA--CAAAACAATCAATATTGCAAAC 1579
|||| ||||||| ||||||||||||||||| | | |||||| ||||||||||||||
Sbjct 1491 TTACATACAATTTTCTTCTGCATCGGGTGCATTAGATGCAAAAC--TCAATATTGCAAAC 1548
Query 1580 GAAT-AAGATCTTGATGCTAAATCTGAGTGTATCAT 1614
|||| |||||||||||||||||||||| ||||||||
Sbjct 1549 GAATTAAGATCTTGATGCTAAATCTGAATGTATCAT 1584
> Ahg938344 jgi|Araly1|938344|scaffold_502535.1
Length=1300
Score = 1376 bits (745), Expect = 0.0
Identities = 1107/1277 (87%), Gaps = 43/1277 (3%)
Strand=Plus/Plus
Query 162 ATGGCGGA-GGAGAAATGGGTGGTGATGGTGACGGCGCAGACTCCAACGAATATCGCCGT 220
||||| || ||||||||||||| | |||||||||||||| ||||| ||||| || || ||
Sbjct 21 ATGGC-GACGGAGAAATGGGTGTTCATGGTGACGGCGCAAACTCCGACGAACATTGCGGT 79
Query 221 GATTAAGTATTGGGGAAAGAGAGATGAGGTTCGGATTCTTCCCATTAATGATAGCATTAG 280
||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 80 GATTAAGTATTGGGGAAAGAGAGATGAGGTTCGGATTCTCCCCGTTAACGATAGCATTAG 139
Query 281 CGTCACGCTTGATCCTGATCACCTCTGTACTC-TCACCACCGTCGCTGTTAGTCCTTCCT 339
||| || |||||||| ||||| |||||||| | | || || ||||| ||||||||| | |
Sbjct 140 CGTAACTCTTGATCCCGATCATCTCTGTAC-CGTTACTACTGTCGCCGTTAGTCCTGCGT 198
Query 340 TTGATCGAGATCGAATGTGGCTCAATGGCAAGGAAATCTCGCTTTCTGGAAGTAGGTACC 399
||||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 199 TTGATCGGGATCGAATGTGGCTCAATGGCAAGGAAATATCTCTATCTGGAAGTAGGTACC 258
Query 400 AGAATTGCTTGAGGGAAATTCGAAGTCGTGCTGATGATGTAGAAGATAAAGAAAAGGGTA 459
| ||||| |||||||| |||||||||||||||| |||||| ||||| || |||||||| |
Sbjct 259 AAAATTGTTTGAGGGAGATTCGAAGTCGTGCTGGTGATGTTGAAGACAAGGAAAAGGGGA 318
Query 460 TCAAGATTGCGAAGAAAGATTGGGAGAAGCTGCATCTGCACATTGCTTCTCATAACAACT 519
||| ||| | |||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 319 TCACGATAGGGAAGAAAGATTGGGAGAAATTGCATCTACACATTGCTTCTCATAACAACT 378
Query 520 TCCCTACTGCTGCTGGCTTAGCATCTTCTGCTGCTGGTTTTGCTTG-CTTAGTTTTTGCT 578
|||||||||||||||||||||||||||| |||||||| |||||||| || ||||||| ||
Sbjct 379 TCCCTACTGCTGCTGGCTTAGCATCTTCAGCTGCTGGATTTGCTTGTCT-AGTTTTTTCT 437
Query 579 CTTGCCAAGTTGATGAATGTAAATGAAGATCCAAGCCAACTTTCTGCTATAGCAAGGCAA 638
||||| ||||||||||||||| |||||||||||||||| |||||||| ||||| ||||||
Sbjct 438 CTTGCAAAGTTGATGAATGTAGATGAAGATCCAAGCCATCTTTCTGCAATAGCCAGGCAA 497
Query 639 GGTTCAGGAAGTGCTTGCCGTAGTTTATTTGGGGGATTTGTCAAGTGGA-ATATGGGAAA 697
|||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||
Sbjct 498 GGTTCAGGAAGTGCTTGCCGTAGTTTATTTGGTGGATTTGTCAAGTGGACA-ATGGGAAG 556
Query 698 CAAAGAAGATGGAAGTGACAGTGTTGCAGTTCAACTGGTAGATGATAAGCACTGGGATGA 757
||||||||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||
Sbjct 557 CAAAGAAGATGGAAGTGACAGCGTTGCAGTTCAACTGGCAGATGAGAAGCATTGGGATGA 616
Query 758 TCTTGTTATCATTATTGCTGTGGTTAGTTCAC-GACAGAAGGAAACAAGCAGCACCTCGG 816
|||||||||||| ||||||||||| ||||||| | ||||||||||| ||||| ||||| |
Sbjct 617 TCTTGTTATCATCATTGCTGTGGTGAGTTCACAG-CAGAAGGAAACGAGCAGTACCTCCG 675
Query 817 GAATGCGTGAGAGTGTTGAGACAAGTTTGCTTTTACAGCATAGAGCAAAGGAAGTTGTCC 876
|||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 676 GAATGCGTGAAAGTGTTGAGACGAGTTTGCTTTTACAGCATAGAGCAAAAGAAGTTGTGC 735
Query 877 CAGTACGGATTTTGCAAATGGAAGAAGCTATAAAGAATCGAGA-TTTCACATCTTTTACA 935
|| |||||||||||||||||| ||||||||||| |||||||| ||| |||| ||||||
Sbjct 736 CAAAACGGATTTTGCAAATGGAGGAAGCTATAAAAAATCGAGACTTTG-CATCCTTTACA 794
Query 936 AAATTGACGTGTTCAGACAGTAATCAGTTTCATGCTGTTTGTATGGATACATCTCCACCC 995
||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 795 CAATTGACATGTACAGATAGTAATCAGTTTCATGCTGTTTGTCTGGATACATCTCCACCC 854
Query 996 ATATTCTACATGAATGACACCTCCCACAGGATAATCAGCTTAGTTGAAAAGTGGAACCGT 1055
|||||||||||||||||||| || ||||| || || ||||||||||||||||||||||||
Sbjct 855 ATATTCTACATGAATGACACTTCACACAGAATTATTAGCTTAGTTGAAAAGTGGAACCGT 914
Query 1056 TCTGCCGGTACACCAGAGATTGCTTATACATTTGATGCTGGCCCAAATGCAGT-CATGAT 1114
|||| || |||||| || ||||||| |||||||||||||| |||||||| || | ||||
Sbjct 915 TCTGAAGGGACACCACAGGTTGCTTACACATTTGATGCTGGTCCAAATGCTGTAC-TGAT 973
Query 1115 TGCAAGAAACAGGAAAG-TAGCAGTTGAATTGCTGCAGGGGCTGCTCTACTGCTTCCCTC 1173
|||| | ||||| |||| | |||||| ||||||| |||||||| || |||| ||||| |
Sbjct 974 TGCACGCAACAG-AAAGGTCGCAGTTCAATTGCTTCAGGGGCTTCTGTACTATTTCCCCC 1032
Query 1174 CTAAGCCTGACACAGACATGAAGAGTTACGTACTGGGGGATACAT-CGATAGTAAAAGAG 1232
||||| | ||||| || ||||||||||||||| ||||||||| || |||| |||||||
Sbjct 1033 CTAAGTCAGACACTGATATGAAGAGTTACGTAGTGGGGGATA-ATTCGATTCTAAAAGAA 1091
Query 1233 GCAGG-CTTGGAAGGAG-A-GC--T-TCCA----C---AA-----G---GAA-TTAAAGA 1270
||||| || | | |||| | | | || | | || | ||| |||||||
Sbjct 1092 GCAGGACTAG-ATGGAGCAAGTGGTGTCGAAAATCTGCAACCTCCGCCTGAAATTAAAGA 1150
Query 1271 CAAAATTGGAAGTCAGGATCAAAAAGGTGAAGTGAGTTATTTTATATGCAGC-AGACCTG 1329
||| |||||| ||||||||||||||| ||||| ||||||||||| |||| | |||||||
Sbjct 1151 CAACATTGGATCTCAGGATCAAAAAGGAGAAGTCAGTTATTTTATCTGCA-CTAGACCTG 1209
Query 1330 GAAGAGGTCCTGTGGTGCTTCAAGACCAAACTCAAGCTCTTCTCCATCCTCAAACTGGCC 1389
||| |||||| | ||||||| |||||||||||||| |||||| ||||| |||||||||
Sbjct 1210 GAAAAGGTCCCATCTTGCTTCAGGACCAAACTCAAGCCCTTCTCGATCCTGAAACTGGCC 1269
Query 1390 TCCCCAAATAACCATTT 1406
| || || | | |||||
Sbjct 1270 TTCCTAAGTGAGCATTT 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60792031020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5