BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38710.1
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482883 jgi|Araly1|482883|fgenesh2_kg.4__1943__AT2G38710.1 1369 0.0
> Ahg482883 jgi|Araly1|482883|fgenesh2_kg.4__1943__AT2G38710.1
Length=896
Score = 1369 bits (741), Expect = 0.0
Identities = 854/904 (94%), Gaps = 26/904 (3%)
Strand=Plus/Plus
Query 20 CATCTTCCTCTCTCTCCTGCGC--T--TTTCT-TTACTCAGGTTCACATTACTTGCTGAT 74
|||||||||||||||||||||| | ||| | || ||||||||||||||||||||| ||
Sbjct 1 CATCTTCCTCTCTCTCCTGCGCTTTACTTTTTGTTTCTCAGGTTCACATTACTTGCTCAT 60
Query 75 TTGGAtttttttCATCTG-CGGTT-T-TCTCTTCCAAGCAACAATGGTGTCGGCGAACAG 131
||||| |||| |||| | ||| | |||||| ||||||| ||||| |||||||||||
Sbjct 61 TTGGA-GGTTTT--TCTGAC-GTTCTGCCTCTTCAAAGCAACGATGGTATCGGCGAACAG 116
Query 132 AGAAATGGCTGTTTACTGTTTCGACACTTTGGTCTCTCACTACAACAATGAAGAGACTCC 191
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AGAAATGGCTGTCTACTGTTTCGACACTTTGGTCTCTCACTACAACAATGAAGAGACTCC 176
Query 192 ACCACCTGCCTTTGAAGAGGCCAATCATCCATTGTTTGTTACCTGGAAGAAAATAGTGAA 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 ACCACCTGCCTTTGAAGAGGCCAATCATCCATTGTTTGTTACCTGGAAGAAAATAGTGAA 236
Query 252 TGGTGGAGAGCCTCGGTTGCGTGGATGTATTGGTACACTGGAAGCACGCCGCTTGATCAG 311
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TGGTGGAGAGCCTCGATTGCGTGGATGTATTGGTACACTGGAAGCACGCCGCTTGATCAG 296
Query 312 TGGCTTCAAGGATTATGCCTTGACAAGTGCCTTGAGGGATCGCAGGTTCCCACCTATACA 371
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 297 TGGCTTCAAGGATTATGCCTTGACTAGTGCCTTAAGGGATCGTAGGTTCCCACCTATACA 356
Query 372 GGCCAAAGAATTGCCATCTCTGCAGTGTACGGTGTCTGTCTTGACTGATTATGAAGATGC 431
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 357 GGCCAAAGAATTGCCATCTCTGCAATGTACTGTGTCTGTCTTGACTGATTATGAAGATGC 416
Query 432 AGAAGATTACCTTGATTGGGAGGTTGGTAAGCATGGTATAATCATTGAGTTTACTGAACC 491
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 417 AGAAGATTACCTTGATTGGGAGGTCGGTAAGCATGGTATAATCATTGAGTTTACTGAACC 476
Query 492 TGAGACTAATACAAAGCGAAGCGCCACATATTTGCCTGAGGTGCCAGCTCATGAAGGCTG 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGAGACTAATACAAAGCGAAGCGCCACATATTTGCCTGAGGTGCCAGCTCATGAAGGCTG 536
Query 552 GACAAAGATAGAGGCAATCGATTCGCTGGTGCGTAAAGCAGGATACAATGGTGTAATAAC 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GACAAAGATAGAGGCAATCGATTCGCTGGTGCGTAAAGCAGGATACAATGGTGTAATAAC 596
Query 612 AGAAGCAGTGCGTAGGCGAATCAATCTAACGCGTTACCAGAGTACATTATTCAGCATGCA 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGAAGCAGTGCGTAGGCGAATCAATCTAACGCGTTACCAGAGTACATTATTCAGCATGCA 656
Query 672 TTATAGCGAATACCTTTCATATGTGAAGGCGACCAGGGGCGTTGTTGGCCCGGTTATTAA 731
||||||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||
Sbjct 657 TTATAGCGAATACCTTTCATATGTGAAGGCGACAAGGGG--T-GTTGGCCCGGGTATTAA 713
Query 732 TGGGATCAACAAGCACGCCTTTGCCTGATTTGCACCTGCAAATGGATGCCATTGATTATG 791
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TGGGATCAACAAGCCCGCCTTTGCCTGATTTGCACCTGCAAATGGATGCCATTGATTATG 773
Query 792 TTTGGCTACCTCCTAATTTATCCTCTGTCT-TG-TT--------GTCTGGCTCTCATAAA 841
|||||||||||||||||||||||||| ||| || || ||||||||||||||||
Sbjct 774 TTTGGCTACCTCCTAATTTATCCTCTATCTATGATTCCAAAATTGTCTGGCTCTCATAAA 833
Query 842 AGAAACGAGACTTCGAACTTGGCTGTTTCACTATTGTAACATTAATTAAATCACTTTCAT 901
|||||||||||||||| |||||||||||| | ||||||||||||||||||||||||| ||
Sbjct 834 AGAAACGAGACTTCGA-CTTGGCTGTTTCTCAATTGTAACATTAATTAAATCACTTTAAT 892
Query 902 CCCT 905
||||
Sbjct 893 CCCT 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33624412794
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5